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comparison test-data/Rpal_01.pepXML @ 0:4f7d6bec667f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
author galaxyp
date Fri, 08 Apr 2016 16:07:32 -0400
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-1:000000000000 0:4f7d6bec667f
1 <?xml version="1.0" encoding="ISO-8859-1"?>
2 <msms_pipeline_analysis date="2011-10-31T11:08:11" summary_xml="Rpal_01.pepXML" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd">
3 <analysis_summary analysis="MyriMatch" version="2.1.101" time="2011-10-31T11:08:11"/>
4 <msms_run_summary base_name="Rpal_01" raw_data_type="" raw_data="">
5 <sample_enzyme name="Trypsin/P" independent="false" fidelity="specific">
6 <specificity sense="C" cut="KR" no_cut="" min_spacing="1"/>
7 </sample_enzyme>
8 <search_summary base_name="Rpal_01" search_engine="MyriMatch" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" out_data_type="" out_data="">
9 <search_database local_path="Mark12-Rpal-20050929-reverse.fasta" database_name="SDB" type="AA"/>
10 <enzymatic_search_constraint enzyme="Trypsin/P" max_num_internal_cleavages="100000" min_number_termini="2"/>
11 <parameter name="Config: AvgPrecursorMzTolerance" value="1.5mz"/>
12 <parameter name="Config: ClassSizeMultiplier" value="2"/>
13 <parameter name="Config: CleavageRules" value="trypsin/p"/>
14 <parameter name="Config: ComputeXCorr" value="1"/>
15 <parameter name="Config: DecoyPrefix" value="rev_"/>
16 <parameter name="Config: DynamicMods" value=""/>
17 <parameter name="Config: EstimateSearchTimeOnly" value="0"/>
18 <parameter name="Config: FragmentMzTolerance" value="30ppm"/>
19 <parameter name="Config: FragmentationAutoRule" value="1"/>
20 <parameter name="Config: FragmentationRule" value="cid"/>
21 <parameter name="Config: MaxDynamicMods" value="2"/>
22 <parameter name="Config: MaxFragmentChargeState" value="0"/>
23 <parameter name="Config: MaxMissedCleavages" value="100000"/>
24 <parameter name="Config: MaxPeakCount" value="300"/>
25 <parameter name="Config: MaxPeptideLength" value="75"/>
26 <parameter name="Config: MaxPeptideMass" value="10000"/>
27 <parameter name="Config: MaxPeptideVariants" value="1000000"/>
28 <parameter name="Config: MaxResultRank" value="2"/>
29 <parameter name="Config: MinPeptideLength" value="5"/>
30 <parameter name="Config: MinPeptideMass" value="0"/>
31 <parameter name="Config: MinResultScore" value="9.9999999999999995e-008"/>
32 <parameter name="Config: MinTerminiCleavages" value="2"/>
33 <parameter name="Config: MonoPrecursorMzTolerance" value="10ppm"/>
34 <parameter name="Config: MonoisotopeAdjustmentSet" value="[-1,2] "/>
35 <parameter name="Config: NumBatches" value="50"/>
36 <parameter name="Config: NumChargeStates" value="3"/>
37 <parameter name="Config: NumIntensityClasses" value="3"/>
38 <parameter name="Config: NumMzFidelityClasses" value="3"/>
39 <parameter name="Config: OutputFormat" value="pepXML"/>
40 <parameter name="Config: OutputSuffix" value=""/>
41 <parameter name="Config: PrecursorMzToleranceRule" value="auto"/>
42 <parameter name="Config: PreferIntenseComplements" value="1"/>
43 <parameter name="Config: ProteinDatabase" value="Mark12-Rpal-20050929-reverse.fasta"/>
44 <parameter name="Config: ProteinListFilters" value=""/>
45 <parameter name="Config: ProteinSamplingTime" value="15"/>
46 <parameter name="Config: ResultsPerBatch" value="200000"/>
47 <parameter name="Config: SpectrumListFilters" value="peakPicking true 2-"/>
48 <parameter name="Config: StaticMods" value=""/>
49 <parameter name="Config: StatusUpdateFrequency" value="5"/>
50 <parameter name="Config: TicCutoffPercentage" value="0.97999999999999998"/>
51 <parameter name="Config: UseMultipleProcessors" value="1"/>
52 <parameter name="Config: UseSmartPlusThreeModel" value="1"/>
53 <parameter name="Config: WorkingDirectory" value="C:\test\rpal-orbi-orbi\raw"/>
54 <parameter name="PeakCounts: 1stQuartile: Filtered" value="94"/>
55 <parameter name="PeakCounts: 1stQuartile: Original" value="109"/>
56 <parameter name="PeakCounts: 2ndQuartile: Filtered" value="130"/>
57 <parameter name="PeakCounts: 2ndQuartile: Original" value="148"/>
58 <parameter name="PeakCounts: 3rdQuartile: Filtered" value="162"/>
59 <parameter name="PeakCounts: 3rdQuartile: Original" value="182"/>
60 <parameter name="PeakCounts: Mean: Filtered" value="127"/>
61 <parameter name="PeakCounts: Mean: Original" value="143"/>
62 <parameter name="PeakCounts: Min/Max: Filtered" value="9 / 299"/>
63 <parameter name="PeakCounts: Min/Max: Original" value="9 / 365"/>
64 <parameter name="SearchEngine: Name" value="MyriMatch"/>
65 <parameter name="SearchEngine: Version" value="2.1.101"/>
66 <parameter name="SearchStats: Nodes" value="1"/>
67 <parameter name="SearchStats: Overall" value="9696 proteins; 2367559 peptides; 1463799 variants; 1624470 comparisons"/>
68 <parameter name="SearchTime: Duration" value="18.9302578 seconds"/>
69 <parameter name="SearchTime: Started" value="11:07:52 on 10/31/2011"/>
70 <parameter name="SearchTime: Stopped" value="11:08:11 on 10/31/2011"/>
71 </search_summary>
72 <spectrum_query spectrum="Rpal_01.4.4.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=4" start_scan="4" end_scan="4" precursor_neutral_mass="971.24544706624" assumed_charge="2" index="2">
73 <search_result num_target_comparisons="2774" num_decoy_comparisons="2735">
74 <search_hit hit_rank="1" peptide="VMKNVIDR" peptide_prev_aa="R" peptide_next_aa="G" protein="rev_RPA0498" num_tot_proteins="1" calc_neutral_pep_mass="974.1791" massdiff="2.93365293376" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="14">
75 <search_score name="number of matched peaks" value="1"/>
76 <search_score name="number of unmatched peaks" value="13"/>
77 <search_score name="mvh" value="5.705950021744"/>
78 <search_score name="mzFidelity" value="7.087171850592"/>
79 <search_score name="xcorr" value="0.12372587929479778"/>
80 </search_hit>
81 <search_hit hit_rank="2" peptide="RTTPLDLR" peptide_prev_aa="R" peptide_next_aa="R" protein="RPA1332" num_tot_proteins="1" calc_neutral_pep_mass="971.11226" massdiff="-0.13318706624" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="15">
82 <search_score name="number of matched peaks" value="1"/>
83 <search_score name="number of unmatched peaks" value="14"/>
84 <search_score name="mvh" value="5.637738227844"/>
85 <search_score name="mzFidelity" value="6.950056555619"/>
86 <search_score name="xcorr" value="0.16826496059233614"/>
87 </search_hit>
88 <search_hit hit_rank="2" peptide="MYDFGSPR" peptide_prev_aa="K" peptide_next_aa="G" protein="rev_RPA3341" num_tot_proteins="1" calc_neutral_pep_mass="972.07534" massdiff="0.82989293376" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="1" tot_num_ions="15">
89 <search_score name="number of matched peaks" value="1"/>
90 <search_score name="number of unmatched peaks" value="14"/>
91 <search_score name="mvh" value="5.637738227844"/>
92 <search_score name="mzFidelity" value="6.950056555619"/>
93 <search_score name="xcorr" value="0.24158960944600402"/>
94 </search_hit>
95 </search_result>
96 </spectrum_query>
97 <spectrum_query spectrum="Rpal_01.4.4.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=4" start_scan="4" end_scan="4" precursor_neutral_mass="1456.86817059936" assumed_charge="3" index="3">
98 <search_result num_target_comparisons="2774" num_decoy_comparisons="2735">
99 <search_hit hit_rank="1" peptide="AAAEGERVLGFALR" peptide_prev_aa="R" peptide_next_aa="S" protein="RPA1259" num_tot_proteins="1" calc_neutral_pep_mass="1459.64904" massdiff="2.78086940064" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="2" tot_num_ions="27">
100 <search_score name="number of matched peaks" value="2"/>
101 <search_score name="number of unmatched peaks" value="25"/>
102 <search_score name="mvh" value="9.639448642731"/>
103 <search_score name="mzFidelity" value="12.288225127384"/>
104 <search_score name="xcorr" value="0.24297397212008945"/>
105 </search_hit>
106 <search_hit hit_rank="1" peptide="ARDSAPSFLYGGGR" peptide_prev_aa="-" peptide_next_aa="I" protein="rev_RPA4791" num_tot_proteins="1" calc_neutral_pep_mass="1453.55834" massdiff="-3.30983059936" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="2" tot_num_ions="27">
107 <search_score name="number of matched peaks" value="2"/>
108 <search_score name="number of unmatched peaks" value="25"/>
109 <search_score name="mvh" value="9.639448642731"/>
110 <search_score name="mzFidelity" value="12.288225127384"/>
111 <search_score name="xcorr" value="0.29122955967718733"/>
112 </search_hit>
113 <search_hit hit_rank="2" peptide="YQFGSCGGGEVSIR" peptide_prev_aa="K" peptide_next_aa="L" protein="rev_RPA2856" num_tot_proteins="1" calc_neutral_pep_mass="1459.58276" massdiff="2.71458940064" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="2" tot_num_ions="28">
114 <search_score name="number of matched peaks" value="2"/>
115 <search_score name="number of unmatched peaks" value="26"/>
116 <search_score name="mvh" value="9.566092014313"/>
117 <search_score name="mzFidelity" value="12.143032047397"/>
118 <search_score name="xcorr" value="0.32399273418844676"/>
119 </search_hit>
120 </search_result>
121 </spectrum_query>
122 <spectrum_query spectrum="Rpal_01.6.6.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=6" start_scan="6" end_scan="6" precursor_neutral_mass="1435.68817059936" assumed_charge="3" index="5">
123 <search_result num_target_comparisons="2664" num_decoy_comparisons="2703">
124 <search_hit hit_rank="1" peptide="WTCTHREPDMR" peptide_prev_aa="K" peptide_next_aa="L" protein="rev_RPA0358" num_tot_proteins="1" calc_neutral_pep_mass="1431.5991" massdiff="-4.08907059936" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="22">
125 <search_score name="number of matched peaks" value="1"/>
126 <search_score name="number of unmatched peaks" value="21"/>
127 <search_score name="mvh" value="4.771549940109"/>
128 <search_score name="mzFidelity" value="6.19199306784"/>
129 <search_score name="xcorr" value="0.33668218702788"/>
130 </search_hit>
131 <search_hit hit_rank="2" peptide="ALDAPEITEYWK" peptide_prev_aa="R" peptide_next_aa="S" protein="RPA2211" num_tot_proteins="1" calc_neutral_pep_mass="1435.57622" massdiff="-0.11195059936" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="1" tot_num_ions="23">
132 <search_score name="number of matched peaks" value="1"/>
133 <search_score name="number of unmatched peaks" value="22"/>
134 <search_score name="mvh" value="4.72772860527"/>
135 <search_score name="mzFidelity" value="6.104439812757"/>
136 <search_score name="xcorr" value="0.50852873161295431"/>
137 </search_hit>
138 <search_hit hit_rank="2" peptide="GLTEVFGEFRER" peptide_prev_aa="R" peptide_next_aa="G" protein="rev_RPA2234" num_tot_proteins="1" calc_neutral_pep_mass="1439.57152" massdiff="3.88334940064" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="23">
139 <search_score name="number of matched peaks" value="1"/>
140 <search_score name="number of unmatched peaks" value="22"/>
141 <search_score name="mvh" value="4.72772860527"/>
142 <search_score name="mzFidelity" value="6.104439812757"/>
143 <search_score name="xcorr" value="0.090642644567764358"/>
144 </search_hit>
145 </search_result>
146 </spectrum_query>
147 <spectrum_query spectrum="Rpal_01.18.18.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=18" start_scan="18" end_scan="18" precursor_neutral_mass="2444.86544706624" assumed_charge="2" index="7">
148 <search_result num_target_comparisons="2396" num_decoy_comparisons="2378">
149 <search_hit hit_rank="1" peptide="EAGVAVTVRLTVRRPRLGQPLR" peptide_prev_aa="K" peptide_next_aa="V" protein="rev_RPA0929" num_tot_proteins="1" calc_neutral_pep_mass="2444.8806" massdiff="0.01515293376" num_tol_term="2" num_missed_cleavages="4" num_matched_ions="1" tot_num_ions="29">
150 <search_score name="number of matched peaks" value="1"/>
151 <search_score name="number of unmatched peaks" value="28"/>
152 <search_score name="mvh" value="6.366468429565"/>
153 <search_score name="mzFidelity" value="5.650373022565"/>
154 <search_score name="xcorr" value="0.19870963499199726"/>
155 </search_hit>
156 <search_hit hit_rank="2" peptide="PGRVRDEVLVPLPRPRTAEMR" peptide_prev_aa="R" peptide_next_aa="S" protein="RPA4163" num_tot_proteins="1" calc_neutral_pep_mass="2444.85738" massdiff="-0.00806706624" num_tol_term="2" num_missed_cleavages="4" num_matched_ions="1" tot_num_ions="28">
157 <search_score name="number of matched peaks" value="1"/>
158 <search_score name="number of unmatched peaks" value="27"/>
159 <search_score name="mvh" value="5.484818696976"/>
160 <search_score name="mzFidelity" value="5.718845762685"/>
161 <search_score name="xcorr" value="0.21646692322489985"/>
162 </search_hit>
163 </search_result>
164 </spectrum_query>
165 <spectrum_query spectrum="Rpal_01.18.18.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=18" start_scan="18" end_scan="18" precursor_neutral_mass="3667.29817059936" assumed_charge="3" index="8">
166 <search_result num_target_comparisons="2396" num_decoy_comparisons="2378">
167 <search_hit hit_rank="1" peptide="WAEMEEFQGDKLAADLARTAETCDALIALDVDR" peptide_prev_aa="R" peptide_next_aa="I" protein="rev_RPA2760" num_tot_proteins="1" calc_neutral_pep_mass="3668.02742" massdiff="0.72924940064" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="1" tot_num_ions="62">
168 <search_score name="number of matched peaks" value="1"/>
169 <search_score name="number of unmatched peaks" value="61"/>
170 <search_score name="mvh" value="5.621503353119"/>
171 <search_score name="mzFidelity" value="4.220733811822"/>
172 <search_score name="xcorr" value="0.23354606578336706"/>
173 </search_hit>
174 <search_hit hit_rank="2" peptide="VIKKSTTGRVLSDDILVIRKGEIAARNASHKMR" peptide_prev_aa="K" peptide_next_aa="V" protein="rev_RPA3091" num_tot_proteins="1" calc_neutral_pep_mass="3664.2889" massdiff="-3.009270599361" num_tol_term="2" num_missed_cleavages="7" num_matched_ions="1" tot_num_ions="62">
175 <search_score name="number of matched peaks" value="1"/>
176 <search_score name="number of unmatched peaks" value="61"/>
177 <search_score name="mvh" value="4.705212593079"/>
178 <search_score name="mzFidelity" value="4.220733811822"/>
179 <search_score name="xcorr" value="0.33999514155915078"/>
180 </search_hit>
181 <search_hit hit_rank="3" peptide="YGRPLRLNAPWWFWNMFGEQGVFLLSRAQK" peptide_prev_aa="R" peptide_next_aa="K" protein="RPA4436" num_tot_proteins="1" calc_neutral_pep_mass="3669.22194" massdiff="1.92376940064" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="1" tot_num_ions="56">
182 <search_score name="number of matched peaks" value="1"/>
183 <search_score name="number of unmatched peaks" value="55"/>
184 <search_score name="mvh" value="4.216502189636"/>
185 <search_score name="mzFidelity" value="4.403077095805"/>
186 <search_score name="xcorr" value="0.31230731711549931"/>
187 </search_hit>
188 </search_result>
189 </spectrum_query>
190 <spectrum_query spectrum="Rpal_01.20.20.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=20" start_scan="20" end_scan="20" precursor_neutral_mass="836.62544706624" assumed_charge="2" index="10">
191 <search_result num_target_comparisons="2377" num_decoy_comparisons="2359">
192 <search_hit hit_rank="1" peptide="PPSHSRR" peptide_prev_aa="R" peptide_next_aa="A" protein="RPA2556" num_tot_proteins="1" calc_neutral_pep_mass="835.91088" massdiff="-0.71456706624" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="1" tot_num_ions="12">
193 <search_score name="number of matched peaks" value="1"/>
194 <search_score name="number of unmatched peaks" value="11"/>
195 <search_score name="mvh" value="5.165723323822"/>
196 <search_score name="mzFidelity" value="7.39388253707"/>
197 <search_score name="xcorr" value="0.15096145810186862"/>
198 </search_hit>
199 </search_result>
200 </spectrum_query>
201 <spectrum_query spectrum="Rpal_01.20.20.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=20" start_scan="20" end_scan="20" precursor_neutral_mass="1254.93817059936" assumed_charge="3" index="11">
202 <search_result num_target_comparisons="2377" num_decoy_comparisons="2359">
203 <search_hit hit_rank="1" peptide="GRKKRRWDR" peptide_prev_aa="-" peptide_next_aa="K" protein="rev_RPA2576" num_tot_proteins="1" calc_neutral_pep_mass="1257.45118" massdiff="2.51300940064" num_tol_term="2" num_missed_cleavages="5" num_matched_ions="1" tot_num_ions="17">
204 <search_score name="number of matched peaks" value="1"/>
205 <search_score name="number of unmatched peaks" value="16"/>
206 <search_score name="mvh" value="5.514616966248"/>
207 <search_score name="mzFidelity" value="6.701621452441"/>
208 <search_score name="xcorr" value="0.11619574564043432"/>
209 </search_hit>
210 <search_hit hit_rank="2" peptide="KRRDKKRLR" peptide_prev_aa="K" peptide_next_aa="E" protein="RPA3081" num_tot_proteins="1" calc_neutral_pep_mass="1255.51988" massdiff="0.58170940064" num_tol_term="2" num_missed_cleavages="6" num_matched_ions="1" tot_num_ions="18">
211 <search_score name="number of matched peaks" value="1"/>
212 <search_score name="number of unmatched peaks" value="17"/>
213 <search_score name="mvh" value="5.458269119263"/>
214 <search_score name="mzFidelity" value="6.588355047646"/>
215 <search_score name="xcorr" value="0.44604161430476236"/>
216 </search_hit>
217 </search_result>
218 </spectrum_query>
219 <spectrum_query spectrum="Rpal_01.21.21.2" spectrumNativeID="controllerType=0 controllerNumber=1 scan=21" start_scan="21" end_scan="21" precursor_neutral_mass="1996.44544706624" assumed_charge="2" index="13">
220 <search_result num_target_comparisons="2376" num_decoy_comparisons="2457">
221 <search_hit hit_rank="1" peptide="VPRKPQPRKAAVRRPSR" peptide_prev_aa="K" peptide_next_aa="A" protein="rev_RPA2589" num_tot_proteins="1" calc_neutral_pep_mass="1999.3734" massdiff="2.92795293376" num_tol_term="2" num_missed_cleavages="6" num_matched_ions="1" tot_num_ions="29">
222 <search_score name="number of matched peaks" value="1"/>
223 <search_score name="number of unmatched peaks" value="28"/>
224 <search_score name="mvh" value="5.263653278351"/>
225 <search_score name="mzFidelity" value="5.650519300492"/>
226 <search_score name="xcorr" value="0.38562970847777772"/>
227 </search_hit>
228 <search_hit hit_rank="2" peptide="KALEGDEHPDIIVFRKK" peptide_prev_aa="K" peptide_next_aa="D" protein="rev_RPA0865" num_tot_proteins="1" calc_neutral_pep_mass="1995.28208" massdiff="-1.16336706624" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="1" tot_num_ions="30">
229 <search_score name="number of matched peaks" value="1"/>
230 <search_score name="number of unmatched peaks" value="29"/>
231 <search_score name="mvh" value="5.230051994324"/>
232 <search_score name="mzFidelity" value="5.584485484559"/>
233 <search_score name="xcorr" value="0.1350407991673217"/>
234 </search_hit>
235 <search_hit hit_rank="2" peptide="SVTPEYLICLEDGKRFK" peptide_prev_aa="K" peptide_next_aa="S" protein="RPA1852" num_tot_proteins="1" calc_neutral_pep_mass="1998.30256" massdiff="1.85711293376" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="1" tot_num_ions="30">
236 <search_score name="number of matched peaks" value="1"/>
237 <search_score name="number of unmatched peaks" value="29"/>
238 <search_score name="mvh" value="5.230051994324"/>
239 <search_score name="mzFidelity" value="5.584485484559"/>
240 <search_score name="xcorr" value="0.21671201714405447"/>
241 </search_hit>
242 </search_result>
243 </spectrum_query>
244 <spectrum_query spectrum="Rpal_01.21.21.3" spectrumNativeID="controllerType=0 controllerNumber=1 scan=21" start_scan="21" end_scan="21" precursor_neutral_mass="2994.66817059936" assumed_charge="3" index="14">
245 <search_result num_target_comparisons="2376" num_decoy_comparisons="2457">
246 <search_hit hit_rank="1" peptide="FLMERYDRRNTETSEVGIVDFRKK" peptide_prev_aa="R" peptide_next_aa="I" protein="rev_RPA0940" num_tot_proteins="1" calc_neutral_pep_mass="2990.35276" massdiff="-4.31541059936" num_tol_term="2" num_missed_cleavages="5" num_matched_ions="1" tot_num_ions="45">
247 <search_score name="number of matched peaks" value="1"/>
248 <search_score name="number of unmatched peaks" value="44"/>
249 <search_score name="mvh" value="4.829092979431"/>
250 <search_score name="mzFidelity" value="4.807287883047"/>
251 <search_score name="xcorr" value="0.056497040579923996"/>
252 </search_hit>
253 <search_hit hit_rank="1" peptide="LIVQFQYYHQLRNPNEGYRGDKPR" peptide_prev_aa="K" peptide_next_aa="R" protein="rev_RPA1045" num_tot_proteins="1" calc_neutral_pep_mass="2992.30882" massdiff="-2.35935059936" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="1" tot_num_ions="45">
254 <search_score name="number of matched peaks" value="1"/>
255 <search_score name="number of unmatched peaks" value="44"/>
256 <search_score name="mvh" value="4.829092979431"/>
257 <search_score name="mzFidelity" value="4.807287883047"/>
258 <search_score name="xcorr" value="0.024783885350877083"/>
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49005 <search_hit hit_rank="2" peptide="NPALRREVK" peptide_prev_aa="K" peptide_next_aa="L" protein="RPA2977" num_tot_proteins="1" calc_neutral_pep_mass="1081.63562584" massdiff="-0.00118841374" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="4" tot_num_ions="16">
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49023 <search_hit hit_rank="1" peptide="NPWEVFVEK" peptide_prev_aa="R" peptide_next_aa="H" protein="RPA0064" num_tot_proteins="1" calc_neutral_pep_mass="1147.27922" massdiff="-2.34622706624" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="10" tot_num_ions="16">
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49037 <search_hit hit_rank="3" peptide="DYGLRAGGSTR" peptide_prev_aa="R" peptide_next_aa="V" protein="rev_RPA4459" num_tot_proteins="1" calc_neutral_pep_mass="1152.21798" massdiff="2.59253293376" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="7" tot_num_ions="20">
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49040 <search_score name="mvh" value="29.204201936722"/>
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49046 </msms_run_summary>
49047 </msms_pipeline_analysis>