Mercurial > repos > galaxyp > idpassemble

annotate test-data/201208-378803-mm-15ppm-fully-tryptic.pepXML @ 7:0fde0095493f draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 0854597c46f50e99a292a48f7f5521db99d26b2b"
author galaxyp
date Fri, 26 Jun 2020 17:33:35 -0400
parents dd33125925d9
children
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dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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1 <?xml version="1.0" encoding="ISO-8859-1"?>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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2 <msms_pipeline_analysis date="2015-09-03T17:55:14" summary_xml="201208-378803.pepXML" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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3 <analysis_summary analysis="MyriMatch" version="2.2.8634" time="2015-09-03T17:55:14"/>
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4 <msms_run_summary base_name="201208-378803" raw_data_type="" raw_data="">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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5 <sample_enzyme name="Trypsin" independent="false" fidelity="specific">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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6 <specificity sense="C" cut="KR" no_cut="P" min_spacing="1"/>
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7 </sample_enzyme>
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8 <search_summary base_name="201208-378803" search_engine="MyriMatch" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" out_data_type="" out_data="">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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9 <search_database local_path="cow.protein.PRG2012-subset.fasta" database_name="SDB" type="AA"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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10 <enzymatic_search_constraint enzyme="Trypsin" max_num_internal_cleavages="4" min_number_termini="2"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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11 <parameter name="Config: AvgPrecursorMzTolerance" value="1.5mz"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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12 <parameter name="Config: ClassSizeMultiplier" value="2"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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13 <parameter name="Config: CleavageRules" value="Trypsin"/>
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14 <parameter name="Config: ComputeXCorr" value="1"/>
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15 <parameter name="Config: DecoyPrefix" value="XXX_"/>
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16 <parameter name="Config: DynamicMods" value=""/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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17 <parameter name="Config: EstimateSearchTimeOnly" value="0"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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18 <parameter name="Config: FragmentMzTolerance" value="0.5mz"/>
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19 <parameter name="Config: FragmentationAutoRule" value="1"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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20 <parameter name="Config: FragmentationRule" value="cid"/>
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21 <parameter name="Config: KeepUnadjustedPrecursorMz" value="0"/>
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22 <parameter name="Config: MaxDynamicMods" value="4"/>
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23 <parameter name="Config: MaxFragmentChargeState" value="0"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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24 <parameter name="Config: MaxMissedCleavages" value="4"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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25 <parameter name="Config: MaxPeakCount" value="300"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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26 <parameter name="Config: MaxPeptideLength" value="75"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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27 <parameter name="Config: MaxPeptideMass" value="10000"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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28 <parameter name="Config: MaxPeptideVariants" value="1000000"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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29 <parameter name="Config: MaxResultRank" value="1"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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30 <parameter name="Config: MinMatchedFragments" value="5"/>
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31 <parameter name="Config: MinPeptideLength" value="5"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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32 <parameter name="Config: MinPeptideMass" value="0"/>
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33 <parameter name="Config: MinResultScore" value="9.9999999999999995e-08"/>
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34 <parameter name="Config: MinTerminiCleavages" value="2"/>
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35 <parameter name="Config: MonoPrecursorMzTolerance" value="15ppm"/>
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36 <parameter name="Config: MonoisotopeAdjustmentSet" value="[0,0] "/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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37 <parameter name="Config: NumBatches" value="50"/>
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38 <parameter name="Config: NumChargeStates" value="3"/>
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39 <parameter name="Config: NumIntensityClasses" value="3"/>
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40 <parameter name="Config: NumMzFidelityClasses" value="3"/>
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41 <parameter name="Config: OutputFormat" value="pepXML"/>
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42 <parameter name="Config: OutputSuffix" value=""/>
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43 <parameter name="Config: PrecursorMzToleranceRule" value="mono"/>
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44 <parameter name="Config: PreferIntenseComplements" value="1"/>
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45 <parameter name="Config: ProteinDatabase" value="cow.protein.PRG2012-subset.fasta"/>
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46 <parameter name="Config: ProteinListFilters" value=""/>
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47 <parameter name="Config: ProteinSamplingTime" value="15"/>
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48 <parameter name="Config: ResultsPerBatch" value="200000"/>
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49 <parameter name="Config: SpectrumListFilters" value="peakPicking true 2-"/>
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50 <parameter name="Config: StaticMods" value=""/>
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51 <parameter name="Config: StatusUpdateFrequency" value="5"/>
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52 <parameter name="Config: TicCutoffPercentage" value="0.97999999999999998"/>
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53 <parameter name="Config: UseMultipleProcessors" value="1"/>
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54 <parameter name="Config: UseSmartPlusThreeModel" value="1"/>
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55 <parameter name="Config: WorkingDirectory" value="/galaxy-central"/>
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56 <parameter name="PeakCounts: 1stQuartile: Filtered" value="116"/>
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57 <parameter name="PeakCounts: 1stQuartile: Original" value="120"/>
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58 <parameter name="PeakCounts: 2ndQuartile: Filtered" value="146"/>
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59 <parameter name="PeakCounts: 2ndQuartile: Original" value="154"/>
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60 <parameter name="PeakCounts: 3rdQuartile: Filtered" value="178"/>
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61 <parameter name="PeakCounts: 3rdQuartile: Original" value="180"/>
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62 <parameter name="PeakCounts: Mean: Filtered" value="151"/>
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63 <parameter name="PeakCounts: Mean: Original" value="157"/>
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64 <parameter name="PeakCounts: Min/Max: Filtered" value="41 / 298"/>
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65 <parameter name="PeakCounts: Min/Max: Original" value="42 / 471"/>
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66 <parameter name="SearchEngine: Name" value="MyriMatch"/>
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67 <parameter name="SearchEngine: Version" value="2.2.8634"/>
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68 <parameter name="SearchStats: Nodes" value="1"/>
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69 <parameter name="SearchStats: Overall" value="144 proteins; 49480 peptides; 27944 variants; 401 comparisons"/>
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70 <parameter name="SearchTime: Duration" value="0.342288971 seconds"/>
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71 <parameter name="SearchTime: Started" value="17:55:14 on 09/03/2015"/>
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72 <parameter name="SearchTime: Stopped" value="17:55:14 on 09/03/2015"/>
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73 </search_summary>
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74 <spectrum_query spectrum="201208-378803.1.1.3" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="1326.694182167619" assumed_charge="3" index="1" retention_time_sec="639.111">
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75 <search_result num_target_comparisons="0" num_decoy_comparisons="0">
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76 <search_hit hit_rank="1" peptide="GDRADKQLVVAR" peptide_prev_aa="R" peptide_next_aa="G" protein="gi|156523214|ref|NP_001096021.1|" num_tot_proteins="3" calc_neutral_pep_mass="1326.7367964476" massdiff="0.042614279981" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="7" tot_num_ions="23">
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77 <alternative_protein protein="gi|528961840|ref|XP_005211303.1|"/>
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78 <alternative_protein protein="gi|528961845|ref|XP_005211304.1|"/>
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79 <search_score name="mvh" value="9.156783954627"/>
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galaxyp
parents:
diff changeset
80 <search_score name="mzFidelity" value="25.381087340985"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
81 <search_score name="xcorr" value="1.1044896737935341"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
82 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
83 <search_hit hit_rank="2" peptide="TKPQIWPKMAK" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" calc_neutral_pep_mass="1326.7482127568" massdiff="0.054030589181" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="22">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
84 <search_score name="mvh" value="5.65200821354"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
85 <search_score name="mzFidelity" value="16.183265741347"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
86 <search_score name="xcorr" value="0.19536201572501194"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
87 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
88 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
89 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
90 <spectrum_query spectrum="201208-378803.2.2.3" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=3" start_scan="2" end_scan="2" precursor_neutral_mass="1296.540613339326" assumed_charge="3" index="2" retention_time_sec="641.23099999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
91 <search_result num_target_comparisons="3" num_decoy_comparisons="0">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
92 <search_hit hit_rank="1" peptide="GEIFGTCGEEQK" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1296.5656165233" massdiff="0.025003183974" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="23">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
93 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
94 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
95 <search_score name="mvh" value="4.73735499523"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
96 <search_score name="mzFidelity" value="20.706193451615"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
97 <search_score name="xcorr" value="-0.027179517265532343"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
98 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
99 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
100 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
101 <spectrum_query spectrum="201208-378803.3.3.2" spectrumNativeID="sample=1 period=1 cycle=1193 experiment=2" start_scan="3" end_scan="3" precursor_neutral_mass="915.392372425296" assumed_charge="2" index="3" retention_time_sec="643.866">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
102 <search_result num_target_comparisons="0" num_decoy_comparisons="4">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
103 <search_hit hit_rank="1" peptide="KQYSCCGK" peptide_prev_aa="R" peptide_next_aa="C" protein="XXX_gi|297488451|ref|XP_002696970.1|" num_tot_proteins="4" calc_neutral_pep_mass="915.3942578605" massdiff="0.001885435204" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="15">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
104 <alternative_protein protein="XXX_gi|358418103|ref|XP_600387.4|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
105 <alternative_protein protein="XXX_gi|528923273|ref|XP_005196452.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
106 <alternative_protein protein="XXX_gi|529000951|ref|XP_005222651.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
107 <search_score name="mvh" value="7.006737263411"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
108 <search_score name="mzFidelity" value="20.083610152632"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
109 <search_score name="xcorr" value="0.10145246835947037"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
110 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
111 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
112 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
113 <spectrum_query spectrum="201208-378803.4.4.3" spectrumNativeID="sample=1 period=1 cycle=1202 experiment=2" start_scan="4" end_scan="4" precursor_neutral_mass="1464.686590506963" assumed_charge="3" index="4" retention_time_sec="680.352">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
114 <search_result num_target_comparisons="8" num_decoy_comparisons="3">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
115 <search_hit hit_rank="1" peptide="LMLLSRDDSGSGSK" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1464.7242424303" massdiff="0.037651923337" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="7" tot_num_ions="28">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
116 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
117 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
118 <search_score name="mvh" value="9.626642757254"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
119 <search_score name="mzFidelity" value="17.69444115758"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
120 <search_score name="xcorr" value="0.63278641261563584"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
121 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
122 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
123 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
124 <spectrum_query spectrum="201208-378803.5.5.2" spectrumNativeID="sample=1 period=1 cycle=1203 experiment=2" start_scan="5" end_scan="5" precursor_neutral_mass="1065.469667444928" assumed_charge="2" index="5" retention_time_sec="685.11700000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
125 <search_result num_target_comparisons="3" num_decoy_comparisons="1">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
126 <search_hit hit_rank="1" peptide="FAVSAEAEDK" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|156523214|ref|NP_001096021.1|" num_tot_proteins="3" calc_neutral_pep_mass="1065.4978545341" massdiff="0.028187089172" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="6" tot_num_ions="19">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
127 <alternative_protein protein="gi|528961840|ref|XP_005211303.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
128 <alternative_protein protein="gi|528961845|ref|XP_005211304.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
129 <search_score name="mvh" value="7.875817776738"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
130 <search_score name="mzFidelity" value="25.766451627541"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
131 <search_score name="xcorr" value="0.25966326437518"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
132 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
133 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
134 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
135 <spectrum_query spectrum="201208-378803.6.6.3" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=3" start_scan="6" end_scan="6" precursor_neutral_mass="2165.295835942044" assumed_charge="3" index="6" retention_time_sec="692.03200000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
136 <search_result num_target_comparisons="1" num_decoy_comparisons="0">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
137 <search_hit hit_rank="1" peptide="VIPSTGSKLKRPTPAFHSSR" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="1" calc_neutral_pep_mass="2165.2069200887" massdiff="-0.088915853344" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="7" tot_num_ions="40">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
138 <search_score name="mvh" value="5.152631021794"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
139 <search_score name="mzFidelity" value="13.354233874427"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
140 <search_score name="xcorr" value="1.5719721875880248"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
141 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
142 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
143 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
144 <spectrum_query spectrum="201208-378803.7.7.2" spectrumNativeID="sample=1 period=1 cycle=1207 experiment=3" start_scan="7" end_scan="7" precursor_neutral_mass="932.457605578544" assumed_charge="2" index="7" retention_time_sec="702.072">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
145 <search_result num_target_comparisons="6" num_decoy_comparisons="8">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
146 <search_hit hit_rank="1" peptide="LQTECLAR" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" calc_neutral_pep_mass="932.4749510225" massdiff="0.017345443956" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="15">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
147 <search_score name="mvh" value="9.497597217689"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
148 <search_score name="mzFidelity" value="22.30229794645"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
149 <search_score name="xcorr" value="0.49551840232685207"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
150 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
151 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
152 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
153 <spectrum_query spectrum="201208-378803.7.7.3" spectrumNativeID="sample=1 period=1 cycle=1207 experiment=3" start_scan="7" end_scan="7" precursor_neutral_mass="1398.686408367816" assumed_charge="3" index="8" retention_time_sec="702.072">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
154 <search_result num_target_comparisons="6" num_decoy_comparisons="8">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
155 <search_hit hit_rank="1" peptide="TVMENFVAFVDK" peptide_prev_aa="K" peptide_next_aa="C" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" calc_neutral_pep_mass="1398.6853377285" massdiff="-0.001070639316" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="6" tot_num_ions="24">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
156 <search_score name="mvh" value="8.903431641574"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
157 <search_score name="mzFidelity" value="21.428101764821"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
158 <search_score name="xcorr" value="0.76171054159046059"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
159 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
160 <search_hit hit_rank="2" peptide="EETTDTSARPHR" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|297488451|ref|XP_002696970.1|" num_tot_proteins="2" calc_neutral_pep_mass="1398.6487693013" massdiff="-0.037639066516" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="24">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
161 <alternative_protein protein="XXX_gi|529000951|ref|XP_005222651.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
162 <search_score name="mvh" value="7.119124685496"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
163 <search_score name="mzFidelity" value="15.436374094438"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
164 <search_score name="xcorr" value="0.45455168821457648"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
165 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
166 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
167 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
168 <spectrum_query spectrum="201208-378803.8.8.2" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=2" start_scan="8" end_scan="8" precursor_neutral_mass="902.494736213322" assumed_charge="2" index="9" retention_time_sec="709.46800000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
169 <search_result num_target_comparisons="6" num_decoy_comparisons="14">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
170 <search_hit hit_rank="1" peptide="WNTLNKK" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="902.4974010241" massdiff="0.002664810778" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="13">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
171 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
172 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
173 <search_score name="mvh" value="7.659026625056"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
174 <search_score name="mzFidelity" value="24.386949005179"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
175 <search_score name="xcorr" value="0.58527988406121734"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
176 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
177 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
178 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
179 <spectrum_query spectrum="201208-378803.8.8.3" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=2" start_scan="8" end_scan="8" precursor_neutral_mass="1353.742104319983" assumed_charge="3" index="10" retention_time_sec="709.46800000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
180 <search_result num_target_comparisons="6" num_decoy_comparisons="14">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
181 <search_hit hit_rank="1" peptide="TFAHTIDLLAPR" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|297479727|ref|XP_002690982.1|" num_tot_proteins="4" calc_neutral_pep_mass="1353.740484842" massdiff="-0.001619477983" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="24">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
182 <alternative_protein protein="XXX_gi|358414198|ref|XP_002700672.2|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
183 <alternative_protein protein="XXX_gi|528966552|ref|XP_005211956.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
184 <alternative_protein protein="XXX_gi|528966554|ref|XP_005211957.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
185 <search_score name="mvh" value="5.426956514787"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
186 <search_score name="mzFidelity" value="14.207593940125"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
187 <search_score name="xcorr" value="0.081095695108339055"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
188 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
189 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
190 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
191 <spectrum_query spectrum="201208-378803.9.9.3" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=5" start_scan="9" end_scan="9" precursor_neutral_mass="1209.554789334543" assumed_charge="3" index="11" retention_time_sec="715.80799999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
192 <search_result num_target_comparisons="5" num_decoy_comparisons="3">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
193 <search_hit hit_rank="1" peptide="FSEIQDRCGR" peptide_prev_aa="R" peptide_next_aa="K" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1209.55605489" massdiff="0.001265555457" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="6" tot_num_ions="20">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
194 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
195 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
196 <search_score name="mvh" value="9.356008366938"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
197 <search_score name="mzFidelity" value="19.437122229364"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
198 <search_score name="xcorr" value="0.57814169108246261"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
199 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
200 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
201 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
202 <spectrum_query spectrum="201208-378803.10.10.2" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=2" start_scan="10" end_scan="10" precursor_neutral_mass="1192.563545399432" assumed_charge="2" index="12" retention_time_sec="718.45300000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
203 <search_result num_target_comparisons="1" num_decoy_comparisons="1">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
204 <search_hit hit_rank="1" peptide="DTHKSEIAHR" peptide_prev_aa="R" peptide_next_aa="F" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" calc_neutral_pep_mass="1192.5948832373" massdiff="0.031337837868" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="7" tot_num_ions="19">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
205 <search_score name="mvh" value="9.6813936101"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
206 <search_score name="mzFidelity" value="31.082800889076"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
207 <search_score name="xcorr" value="0.82413857764303688"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
208 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
209 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
210 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
211 <spectrum_query spectrum="201208-378803.11.11.2" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=3" start_scan="11" end_scan="11" precursor_neutral_mass="921.41789833277" assumed_charge="2" index="13" retention_time_sec="720.588">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
212 <search_result num_target_comparisons="3" num_decoy_comparisons="3">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
213 <search_hit hit_rank="1" peptide="TCLASGNTR" peptide_prev_aa="R" peptide_next_aa="I" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" calc_neutral_pep_mass="921.4338144893" massdiff="0.01591615653" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="6" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
214 <alternative_protein protein="XXX_gi|528921180|ref|XP_005195747.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
215 <alternative_protein protein="XXX_gi|528995523|ref|XP_002695913.2|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
216 <search_score name="mvh" value="9.159765260459"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
217 <search_score name="mzFidelity" value="26.480682982104"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
218 <search_score name="xcorr" value="0.6390236904740334"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
219 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
220 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
221 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
222 <spectrum_query spectrum="201208-378803.12.12.2" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=5" start_scan="12" end_scan="12" precursor_neutral_mass="994.45493277958" assumed_charge="2" index="14" retention_time_sec="731.703">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
223 <search_result num_target_comparisons="5" num_decoy_comparisons="4">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
224 <search_hit hit_rank="1" peptide="KAMGSNMEK" peptide_prev_aa="K" peptide_next_aa="V" protein="XXX_gi|297479727|ref|XP_002690982.1|" num_tot_proteins="4" calc_neutral_pep_mass="994.4575863988" massdiff="0.00265361922" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="8" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
225 <alternative_protein protein="XXX_gi|358414198|ref|XP_002700672.2|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
226 <alternative_protein protein="XXX_gi|528966552|ref|XP_005211956.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
227 <alternative_protein protein="XXX_gi|528966554|ref|XP_005211957.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
228 <search_score name="mvh" value="12.073735470826"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
229 <search_score name="mzFidelity" value="36.65584101311"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
230 <search_score name="xcorr" value="1.1047393040418625"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
231 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
232 <search_hit hit_rank="2" peptide="EVASTTMEK" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" calc_neutral_pep_mass="994.4641115647" massdiff="0.00917878512" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="8" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
233 <search_score name="mvh" value="8.907421620351"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
234 <search_score name="mzFidelity" value="36.65584101311"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
235 <search_score name="xcorr" value="0.71224422781467434"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
236 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
237 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
238 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
239 <spectrum_query spectrum="201208-378803.13.13.3" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=2" start_scan="13" end_scan="13" precursor_neutral_mass="1956.908783163726" assumed_charge="3" index="15" retention_time_sec="734.343">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
240 <search_result num_target_comparisons="4" num_decoy_comparisons="0">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
241 <search_hit hit_rank="1" peptide="SHWEELSKKTADRQSR" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1956.9765858016" massdiff="0.067802637874" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="5" tot_num_ions="32">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
242 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
243 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
244 <search_score name="mvh" value="4.634189610114"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
245 <search_score name="mzFidelity" value="14.581792267312"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
246 <search_score name="xcorr" value="0.14270144006257834"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
247 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
248 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
249 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
250 <spectrum_query spectrum="201208-378803.14.14.3" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=4" start_scan="14" end_scan="14" precursor_neutral_mass="1791.896101356615" assumed_charge="3" index="16" retention_time_sec="738.57799999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
251 <search_result num_target_comparisons="4" num_decoy_comparisons="4">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
252 <search_hit hit_rank="1" peptide="FNVCKGCCSYQKREK" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|297488451|ref|XP_002696970.1|" num_tot_proteins="4" calc_neutral_pep_mass="1791.8218647599" massdiff="-0.074236596715" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="5" tot_num_ions="30">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
253 <alternative_protein protein="gi|358418103|ref|XP_600387.4|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
254 <alternative_protein protein="gi|528923273|ref|XP_005196452.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
255 <alternative_protein protein="gi|529000951|ref|XP_005222651.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
256 <search_score name="mvh" value="4.792319678774"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
257 <search_score name="mzFidelity" value="12.128724458324"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
258 <search_score name="xcorr" value="0.59853426944300958"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
259 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
260 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
261 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
262 <spectrum_query spectrum="201208-378803.15.15.3" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=5" start_scan="15" end_scan="15" precursor_neutral_mass="1750.89174370143" assumed_charge="3" index="17" retention_time_sec="740.688">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
263 <search_result num_target_comparisons="16" num_decoy_comparisons="16">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
264 <search_hit hit_rank="1" peptide="LESTVMKDQNMLKSK" peptide_prev_aa="R" peptide_next_aa="K" protein="XXX_gi|27806851|ref|NP_776358.1|" num_tot_proteins="4" calc_neutral_pep_mass="1750.8957412095" massdiff="0.00399750807" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="8" tot_num_ions="30">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
265 <alternative_protein protein="XXX_gi|528993971|ref|XP_005219929.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
266 <alternative_protein protein="XXX_gi|528993973|ref|XP_005219930.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
267 <alternative_protein protein="XXX_gi|528993975|ref|XP_005219931.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
268 <search_score name="mvh" value="7.284296214724"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
269 <search_score name="mzFidelity" value="20.148862507492"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
270 <search_score name="xcorr" value="0.7764696878998566"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
271 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
272 <search_hit hit_rank="2" peptide="EGSGTVFGRLQLSGTSR" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528959651|ref|XP_005210513.1|" num_tot_proteins="1" calc_neutral_pep_mass="1750.8962102156" massdiff="0.00446651417" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="34">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
273 <search_score name="mvh" value="3.644283803039"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
274 <search_score name="mzFidelity" value="11.898675375085"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
275 <search_score name="xcorr" value="0.5982432740167678"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
276 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
277 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
278 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
279 <spectrum_query spectrum="201208-378803.16.16.2" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=3" start_scan="16" end_scan="16" precursor_neutral_mass="1092.535423665696" assumed_charge="2" index="18" retention_time_sec="745.45399999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
280 <search_result num_target_comparisons="7" num_decoy_comparisons="4">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
281 <search_hit hit_rank="1" peptide="RMMESRQR" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" calc_neutral_pep_mass="1092.5280660005" massdiff="-0.007357665196" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="5" tot_num_ions="15">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
282 <search_score name="mvh" value="7.496813976538"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
283 <search_score name="mzFidelity" value="22.423627864633"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
284 <search_score name="xcorr" value="1.1891104478836059"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
285 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
286 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
287 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
288 <spectrum_query spectrum="201208-378803.16.16.3" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=3" start_scan="16" end_scan="16" precursor_neutral_mass="1638.803135498544" assumed_charge="3" index="19" retention_time_sec="745.45399999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
289 <search_result num_target_comparisons="7" num_decoy_comparisons="4">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
290 <search_hit hit_rank="1" peptide="NLYVTSLGYVHDMK" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1638.8075781292" massdiff="0.004442630656" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="11" tot_num_ions="28">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
291 <alternative_protein protein="XXX_gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
292 <alternative_protein protein="XXX_gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
293 <search_score name="mvh" value="8.876790887427"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
294 <search_score name="mzFidelity" value="38.791698925557"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
295 <search_score name="xcorr" value="1.3482174078005429"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
296 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
297 <search_hit hit_rank="2" peptide="LKEFQESFKNIEK" peptide_prev_aa="R" peptide_next_aa="K" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="1638.8617221897" massdiff="0.058586691156" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="9" tot_num_ions="26">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
298 <search_score name="mvh" value="7.033403304755"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
299 <search_score name="mzFidelity" value="30.897660010175"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
300 <search_score name="xcorr" value="0.11981078219700549"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
301 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
302 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
303 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
304 <spectrum_query spectrum="201208-378803.17.17.3" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=5" start_scan="17" end_scan="17" precursor_neutral_mass="1722.88358447778" assumed_charge="3" index="20" retention_time_sec="749.67799999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
305 <search_result num_target_comparisons="1" num_decoy_comparisons="7">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
306 <search_hit hit_rank="1" peptide="YSKEKVAELEADTIK" peptide_prev_aa="R" peptide_next_aa="W" protein="XXX_gi|297479727|ref|XP_002690982.1|" num_tot_proteins="4" calc_neutral_pep_mass="1722.9039809349" massdiff="0.02039645712" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="9" tot_num_ions="30">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
307 <alternative_protein protein="XXX_gi|358414198|ref|XP_002700672.2|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
308 <alternative_protein protein="XXX_gi|528966552|ref|XP_005211956.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
309 <alternative_protein protein="XXX_gi|528966554|ref|XP_005211957.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
310 <search_score name="mvh" value="8.498974788641"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
311 <search_score name="mzFidelity" value="26.350139498479"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
312 <search_score name="xcorr" value="0.76570581645630353"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
313 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
314 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
315 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
316 <spectrum_query spectrum="201208-378803.18.18.3" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=5" start_scan="18" end_scan="18" precursor_neutral_mass="1555.955330262921" assumed_charge="3" index="21" retention_time_sec="758.643">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
317 <search_result num_target_comparisons="4" num_decoy_comparisons="6">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
318 <search_hit hit_rank="1" peptide="VNPVTALTLLEKMK" peptide_prev_aa="R" peptide_next_aa="D" protein="gi|528968106|ref|XP_005212568.1|" num_tot_proteins="1" calc_neutral_pep_mass="1555.9007502329" massdiff="-0.054580030021" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="13" tot_num_ions="28">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
319 <search_score name="mvh" value="12.347404043894"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
320 <search_score name="mzFidelity" value="40.08300435452"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
321 <search_score name="xcorr" value="1.1043522985891074"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
322 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
323 <search_hit hit_rank="2" peptide="KSMTPIKSPKNLGR" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="1555.8868315032" massdiff="-0.068498759721" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="9" tot_num_ions="28">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
324 <search_score name="mvh" value="6.913414769669"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
325 <search_score name="mzFidelity" value="24.047351030211"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
326 <search_score name="xcorr" value="0.43826535154819474"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
327 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
328 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
329 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
330 <spectrum_query spectrum="201208-378803.19.19.2" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=2" start_scan="19" end_scan="19" precursor_neutral_mass="1209.606505693146" assumed_charge="2" index="22" retention_time_sec="761.289">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
331 <search_result num_target_comparisons="2" num_decoy_comparisons="0">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
332 <search_hit hit_rank="1" peptide="QLAQKYNCDK" peptide_prev_aa="R" peptide_next_aa="M" protein="gi|115496708|ref|NP_001069831.1|" num_tot_proteins="2" calc_neutral_pep_mass="1209.581207008" massdiff="-0.025298685146" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="7" tot_num_ions="19">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
333 <alternative_protein protein="gi|528954392|ref|XP_005208526.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
334 <search_score name="mvh" value="9.906572006939"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
335 <search_score name="mzFidelity" value="31.227798605065"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
336 <search_score name="xcorr" value="0.60352319088628281"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
337 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
338 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
339 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
340 <spectrum_query spectrum="201208-378803.20.20.1" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=4" start_scan="20" end_scan="20" precursor_neutral_mass="673.345853414493" assumed_charge="1" index="23" retention_time_sec="765.513">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
341 <search_result num_target_comparisons="4" num_decoy_comparisons="0">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
342 <search_hit hit_rank="1" peptide="LEQER" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|297479727|ref|XP_002690982.1|" num_tot_proteins="4" calc_neutral_pep_mass="673.3395033986" massdiff="-0.006350015893" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="9">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
343 <alternative_protein protein="gi|358414198|ref|XP_002700672.2|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
344 <alternative_protein protein="gi|528966552|ref|XP_005211956.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
345 <alternative_protein protein="gi|528966554|ref|XP_005211957.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
346 <search_score name="mvh" value="11.401674447279"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
347 <search_score name="mzFidelity" value="30.941415228524"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
348 <search_score name="xcorr" value="1.1330888806819917"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
349 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
350 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
351 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
352 <spectrum_query spectrum="201208-378803.21.21.3" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=2" start_scan="21" end_scan="21" precursor_neutral_mass="1389.623975629428" assumed_charge="3" index="24" retention_time_sec="768.16399999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
353 <search_result num_target_comparisons="1" num_decoy_comparisons="0">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
354 <search_hit hit_rank="1" peptide="SQVNSEGLHSYGL" peptide_prev_aa="K" peptide_next_aa="-" protein="gi|528953246|ref|XP_005208086.1|" num_tot_proteins="1" calc_neutral_pep_mass="1389.6524576957" massdiff="0.028482066272" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="26">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
355 <search_score name="mvh" value="4.718035090273"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
356 <search_score name="mzFidelity" value="19.580751896886"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
357 <search_score name="xcorr" value="0.61395449436268368"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
358 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
359 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
360 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
361 <spectrum_query spectrum="201208-378803.22.22.2" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=5" start_scan="22" end_scan="22" precursor_neutral_mass="1149.594918445548" assumed_charge="2" index="25" retention_time_sec="774.177">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
362 <search_result num_target_comparisons="0" num_decoy_comparisons="3">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
363 <search_hit hit_rank="1" peptide="AWTLVEEFR" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1149.581858935" massdiff="-0.013059510548" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="8" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
364 <alternative_protein protein="XXX_gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
365 <alternative_protein protein="XXX_gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
366 <search_score name="mvh" value="8.617394604809"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
367 <search_score name="mzFidelity" value="41.257129700066"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
368 <search_score name="xcorr" value="0.50047582628726961"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
369 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
370 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
371 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
372 <spectrum_query spectrum="201208-378803.23.23.2" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=2" start_scan="23" end_scan="23" precursor_neutral_mass="1001.473988799636" assumed_charge="2" index="26" retention_time_sec="776.78599999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
373 <search_result num_target_comparisons="1" num_decoy_comparisons="0">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
374 <search_hit hit_rank="1" peptide="QSPVDIDTK" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" calc_neutral_pep_mass="1001.502939912" massdiff="0.028951112364" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="6" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
375 <search_score name="mvh" value="6.736171527742"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
376 <search_score name="mzFidelity" value="25.329090035405"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
377 <search_score name="xcorr" value="0.18480664704442024"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
378 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
379 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
380 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
381 <spectrum_query spectrum="201208-378803.24.24.2" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=4" start_scan="24" end_scan="24" precursor_neutral_mass="1141.631807949586" assumed_charge="2" index="27" retention_time_sec="780.153">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
382 <search_result num_target_comparisons="3" num_decoy_comparisons="2">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
383 <search_hit hit_rank="1" peptide="LPREKGRMR" peptide_prev_aa="K" peptide_next_aa="F" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1141.6502300467" massdiff="0.018422097114" num_tol_term="2" num_missed_cleavages="3" num_matched_ions="7" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
384 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
385 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
386 <search_score name="mvh" value="7.929069617921"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
387 <search_score name="mzFidelity" value="29.580519925012"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
388 <search_score name="xcorr" value="0.21898586032688619"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
389 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
390 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
391 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
392 <spectrum_query spectrum="201208-378803.25.25.2" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=2" start_scan="25" end_scan="25" precursor_neutral_mass="1153.526999083812" assumed_charge="2" index="28" retention_time_sec="784.929">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
393 <search_result num_target_comparisons="3" num_decoy_comparisons="3">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
394 <search_hit hit_rank="1" peptide="CFHAWSTFR" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" calc_neutral_pep_mass="1153.5127335123" massdiff="-0.014265571512" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="6" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
395 <alternative_protein protein="gi|528921180|ref|XP_005195747.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
396 <alternative_protein protein="gi|528995523|ref|XP_002695913.2|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
397 <search_score name="mvh" value="6.610627314763"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
398 <search_score name="mzFidelity" value="25.103994445626"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
399 <search_score name="xcorr" value="0.63611245342344047"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
400 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
401 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
402 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
403 <spectrum_query spectrum="201208-378803.26.26.2" spectrumNativeID="sample=1 period=1 cycle=1219 experiment=3" start_scan="26" end_scan="26" precursor_neutral_mass="1016.499381574794" assumed_charge="2" index="29" retention_time_sec="794.75899999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
404 <search_result num_target_comparisons="4" num_decoy_comparisons="4">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
405 <search_hit hit_rank="1" peptide="DARDGRDGR" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|156523214|ref|NP_001096021.1|" num_tot_proteins="3" calc_neutral_pep_mass="1016.4747681016" massdiff="-0.024613473194" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="6" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
406 <alternative_protein protein="XXX_gi|528961840|ref|XP_005211303.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
407 <alternative_protein protein="XXX_gi|528961845|ref|XP_005211304.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
408 <search_score name="mvh" value="8.674293346576"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
409 <search_score name="mzFidelity" value="26.395843983313"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
410 <search_score name="xcorr" value="0.25083901307377965"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
411 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
412 <search_hit hit_rank="2" peptide="DAENTVRGR" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" calc_neutral_pep_mass="1016.4999202196" massdiff="5.386448059426e-04" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
413 <search_score name="mvh" value="6.018930162713"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
414 <search_score name="mzFidelity" value="21.495483219677"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
415 <search_score name="xcorr" value="0.48560360629353672"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
416 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
417 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
418 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
419 <spectrum_query spectrum="201208-378803.27.27.3" spectrumNativeID="sample=1 period=1 cycle=1220 experiment=2" start_scan="27" end_scan="27" precursor_neutral_mass="1227.620988215667" assumed_charge="3" index="30" retention_time_sec="799.51399999998">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
420 <search_result num_target_comparisons="3" num_decoy_comparisons="10">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
421 <search_hit hit_rank="1" peptide="VQALGISDNRR" peptide_prev_aa="-" peptide_next_aa="D" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" calc_neutral_pep_mass="1227.6683825314" massdiff="0.047394315733" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="22">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
422 <search_score name="mvh" value="10.596869413746"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
423 <search_score name="mzFidelity" value="16.943900632366"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
424 <search_score name="xcorr" value="0.80438670446588878"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
425 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
426 <search_hit hit_rank="2" peptide="QRKLNDALDR" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="1227.6683825314" massdiff="0.047394315733" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="5" tot_num_ions="20">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
427 <search_score name="mvh" value="8.043398295653"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
428 <search_score name="mzFidelity" value="22.280698819327"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
429 <search_score name="xcorr" value="1.1322035509574475"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
430 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
431 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
432 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
433 <spectrum_query spectrum="201208-378803.28.28.3" spectrumNativeID="sample=1 period=1 cycle=1222 experiment=2" start_scan="28" end_scan="28" precursor_neutral_mass="1743.833885215164" assumed_charge="3" index="31" retention_time_sec="806.97400000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
434 <search_result num_target_comparisons="16" num_decoy_comparisons="19">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
435 <search_hit hit_rank="1" peptide="GAAQLNFNVDLEGQLR" peptide_prev_aa="R" peptide_next_aa="M" protein="XXX_gi|297488451|ref|XP_002696970.1|" num_tot_proteins="4" calc_neutral_pep_mass="1743.8903965562" massdiff="0.056511341036" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="9" tot_num_ions="31">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
436 <alternative_protein protein="XXX_gi|358418103|ref|XP_600387.4|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
437 <alternative_protein protein="XXX_gi|528923273|ref|XP_005196452.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
438 <alternative_protein protein="XXX_gi|529000951|ref|XP_005222651.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
439 <search_score name="mvh" value="8.703745165284"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
440 <search_score name="mzFidelity" value="27.499216944034"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
441 <search_score name="xcorr" value="0.88904612235733371"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
442 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
443 <search_hit hit_rank="2" peptide="LQGELDVNFNLQAAGR" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="1" calc_neutral_pep_mass="1743.8903965562" massdiff="0.056511341036" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="7" tot_num_ions="32">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
444 <search_score name="mvh" value="7.396562819256"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
445 <search_score name="mzFidelity" value="16.597930481493"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
446 <search_score name="xcorr" value="0.85658302524349561"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
447 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
448 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
449 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
450 <spectrum_query spectrum="201208-378803.29.29.3" spectrumNativeID="sample=1 period=1 cycle=1224 experiment=2" start_scan="29" end_scan="29" precursor_neutral_mass="1725.858220325283" assumed_charge="3" index="32" retention_time_sec="814.37500000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
451 <search_result num_target_comparisons="5" num_decoy_comparisons="5">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
452 <search_hit hit_rank="1" peptide="IHGFDLAAINLQRCR" peptide_prev_aa="K" peptide_next_aa="D" protein="gi|27806851|ref|NP_776358.1|" num_tot_proteins="4" calc_neutral_pep_mass="1725.9096922103" massdiff="0.051471885017" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="12" tot_num_ions="30">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
453 <alternative_protein protein="gi|528993971|ref|XP_005219929.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
454 <alternative_protein protein="gi|528993973|ref|XP_005219930.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
455 <alternative_protein protein="gi|528993975|ref|XP_005219931.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
456 <search_score name="mvh" value="12.259750257107"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
457 <search_score name="mzFidelity" value="34.970325461964"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
458 <search_score name="xcorr" value="1.9202226581428345"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
459 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
460 <search_hit hit_rank="2" peptide="ISELFDKLDSMSVDK" peptide_prev_aa="R" peptide_next_aa="I" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="1" calc_neutral_pep_mass="1725.8495025234" massdiff="-0.008717801883" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="11" tot_num_ions="30">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
461 <search_score name="mvh" value="11.323857836871"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
462 <search_score name="mzFidelity" value="36.756835575306"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
463 <search_score name="xcorr" value="0.93184037338923231"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
464 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
465 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
466 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
467 <spectrum_query spectrum="201208-378803.30.30.3" spectrumNativeID="sample=1 period=1 cycle=1231 experiment=2" start_scan="30" end_scan="30" precursor_neutral_mass="1467.72458061501" assumed_charge="3" index="33" retention_time_sec="839.28400000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
468 <search_result num_target_comparisons="8" num_decoy_comparisons="2">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
469 <search_hit hit_rank="1" peptide="GVTEHSNQQQGRK" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|156523214|ref|NP_001096021.1|" num_tot_proteins="3" calc_neutral_pep_mass="1467.7178519195" massdiff="-0.00672869551" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="25">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
470 <alternative_protein protein="gi|528961840|ref|XP_005211303.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
471 <alternative_protein protein="gi|528961845|ref|XP_005211304.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
472 <search_score name="mvh" value="6.653798251586"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
473 <search_score name="mzFidelity" value="14.932769947598"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
474 <search_score name="xcorr" value="0.028206144867315191"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
475 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
476 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
477 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
478 <spectrum_query spectrum="201208-378803.31.31.2" spectrumNativeID="sample=1 period=1 cycle=1234 experiment=2" start_scan="31" end_scan="31" precursor_neutral_mass="1030.473954852586" assumed_charge="2" index="34" retention_time_sec="842.98000000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
479 <search_result num_target_comparisons="0" num_decoy_comparisons="3">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
480 <search_hit hit_rank="1" peptide="TFAHQENGK" peptide_prev_aa="R" peptide_next_aa="R" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" calc_neutral_pep_mass="1030.4832075229" massdiff="0.009252670314" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="17">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
481 <alternative_protein protein="XXX_gi|528921180|ref|XP_005195747.1|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
482 <alternative_protein protein="XXX_gi|528995523|ref|XP_002695913.2|"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
483 <search_score name="mvh" value="6.979786912131"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
484 <search_score name="mzFidelity" value="21.605021401289"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
485 <search_score name="xcorr" value="0.49320911207199097"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
486 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
487 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
488 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
489 <spectrum_query spectrum="201208-378803.32.32.3" spectrumNativeID="sample=1 period=1 cycle=1283 experiment=2" start_scan="32" end_scan="32" precursor_neutral_mass="1770.954827198736" assumed_charge="3" index="35" retention_time_sec="883.49500000002">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
490 <search_result num_target_comparisons="1" num_decoy_comparisons="9">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
491 <search_hit hit_rank="1" peptide="TEPHSFQRLSLTEVK" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" calc_neutral_pep_mass="1770.9264477115" massdiff="-0.028379487236" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="30">
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
492 <search_score name="mvh" value="6.109846868339"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
493 <search_score name="mzFidelity" value="13.900987096911"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
494 <search_score name="xcorr" value="0.73578462478668327"/>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
495 </search_hit>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
496 </search_result>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
497 </spectrum_query>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
498 </msms_run_summary>
dd33125925d9 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
499 </msms_pipeline_analysis>