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comparison idpassemble.xml @ 2:dd33125925d9 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
author galaxyp
date Fri, 06 Oct 2017 15:00:48 -0400
parents 0d089906f752
children d562ee284f8a
comparison
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1:ee69ea5752fe 2:dd33125925d9
68 <param name="filter_at_gene_level_condition.MinSpectra" value="2" /> 68 <param name="filter_at_gene_level_condition.MinSpectra" value="2" />
69 <param name="filter_at_gene_level_condition.MinAdditionalPeptides" value="1" /> 69 <param name="filter_at_gene_level_condition.MinAdditionalPeptides" value="1" />
70 <param name="MinSpectraPerDistinctMatch" value="1" /> 70 <param name="MinSpectraPerDistinctMatch" value="1" />
71 <param name="MinSpectraPerDistinctPeptide" value="1" /> 71 <param name="MinSpectraPerDistinctPeptide" value="1" />
72 <param name="MaxProteinGroupsPerPeptide" value="10" /> 72 <param name="MaxProteinGroupsPerPeptide" value="10" />
73 <output name="output" file="201208-378803-mm.idpDB" compare="sim_size" delta="500000" /> 73 <output name="output" file="201208-378803-mm-filtered.idpDB" compare="sim_size" delta="500000" />
74 </test> 74 </test>
75 <test> 75 <test>
76 <param name="input" value="201208-378803-msgf.idpDB" /> 76 <param name="input" value="201208-378803-msgf.idpDB" />
77 <param name="MaxFDRScore" value="0.05" /> 77 <param name="MaxFDRScore" value="0.05" />
78 <param name="filter_at_gene_level_condition.MinDistinctPeptides" value="2" /> 78 <param name="filter_at_gene_level_condition.MinDistinctPeptides" value="2" />
79 <param name="filter_at_gene_level_condition.MinSpectra" value="2" /> 79 <param name="filter_at_gene_level_condition.MinSpectra" value="2" />
80 <param name="filter_at_gene_level_condition.MinAdditionalPeptides" value="1" /> 80 <param name="filter_at_gene_level_condition.MinAdditionalPeptides" value="1" />
81 <param name="MinSpectraPerDistinctMatch" value="1" /> 81 <param name="MinSpectraPerDistinctMatch" value="1" />
82 <param name="MinSpectraPerDistinctPeptide" value="1" /> 82 <param name="MinSpectraPerDistinctPeptide" value="1" />
83 <param name="MaxProteinGroupsPerPeptide" value="10" /> 83 <param name="MaxProteinGroupsPerPeptide" value="10" />
84 <output name="output" file="201208-378803-msgf.idpDB" compare="sim_size" delta="500000" /> 84 <output name="output" file="201208-378803-msgf-filtered.idpDB" compare="sim_size" delta="500000" />
85 </test> 85 </test>
86 <test> 86 <test>
87 <param name="input" value="201208-378803-cm.idpDB" /> 87 <param name="input" value="201208-378803-cm.idpDB" />
88 <param name="MaxFDRScore" value="0.05" /> 88 <param name="MaxFDRScore" value="0.05" />
89 <param name="filter_at_gene_level_condition.MinDistinctPeptides" value="2" /> 89 <param name="filter_at_gene_level_condition.MinDistinctPeptides" value="2" />
90 <param name="filter_at_gene_level_condition.MinSpectra" value="2" /> 90 <param name="filter_at_gene_level_condition.MinSpectra" value="2" />
91 <param name="filter_at_gene_level_condition.MinAdditionalPeptides" value="1" /> 91 <param name="filter_at_gene_level_condition.MinAdditionalPeptides" value="1" />
92 <param name="MinSpectraPerDistinctMatch" value="1" /> 92 <param name="MinSpectraPerDistinctMatch" value="1" />
93 <param name="MinSpectraPerDistinctPeptide" value="1" /> 93 <param name="MinSpectraPerDistinctPeptide" value="1" />
94 <param name="MaxProteinGroupsPerPeptide" value="10" /> 94 <param name="MaxProteinGroupsPerPeptide" value="10" />
95 <output name="output" file="201208-378803-cm.idpDB" compare="sim_size" delta="500000" /> 95 <output name="output" file="201208-378803-cm-filtered.idpDB" compare="sim_size" delta="500000" />
96 </test> 96 </test>
97 <test> 97 <test>
98 <param name="input" value="201208-378803-mm.idpDB,201208-378803-msgf.idpDB,201208-378803-cm.idpDB" /> 98 <param name="input" value="201208-378803-mm.idpDB,201208-378803-msgf.idpDB,201208-378803-cm.idpDB" />
99 <param name="MaxFDRScore" value="0.05" /> 99 <param name="MaxFDRScore" value="0.05" />
100 <param name="filter_at_gene_level_condition.MinDistinctPeptides" value="2" /> 100 <param name="filter_at_gene_level_condition.MinDistinctPeptides" value="2" />