Mercurial > repos > galaxyp > idpqonvert

comparison idpQonvertEmbedder.xml @ 10:2ec9bd69259e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 66973ea01088c809c3f7c3daa54233674c67fa45"
author galaxyp
date Fri, 12 Jun 2020 17:02:53 -0400
parents fb6ce5041417
children
comparison
equal deleted inserted replaced
9:67cba55885c3 10:2ec9bd69259e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="idpqonvertEmbedder" name="idpEmbedder" version="@VERSION@.0"> 2 <tool id="idpqonvertEmbedder" name="idpEmbedder" version="@VERSION@.1">
3 <description>Embed human/mouse gene metadata into IDPicker files</description> 3 <description>Embed human/mouse gene metadata into IDPicker files</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <xml name="IsobaricQuantitationOptions" token_tolerance="0.015"> 6 <xml name="IsobaricQuantitationOptions" token_tolerance="0.015">
7 <param argument="-ReporterIonMzTolerance" type="float" min="0.000001" value="@TOLERANCE@" label="Tolerance window to search for iTRAQ/TMT reporter ions" help="The most intense ion in the tolerance window is used as the reporter ion intensity." /> 7 <param argument="-ReporterIonMzTolerance" type="float" min="0.000001" value="@TOLERANCE@" label="Tolerance window to search for iTRAQ/TMT reporter ions" help="The most intense ion in the tolerance window is used as the reporter ion intensity." />
64 <option value="ITRAQ4plex">iTRAQ 4-plex</option> 64 <option value="ITRAQ4plex">iTRAQ 4-plex</option>
65 <option value="ITRAQ8plex">iTRAQ 8-plex</option> 65 <option value="ITRAQ8plex">iTRAQ 8-plex</option>
66 <option value="TMT2plex">TMT 2-plex</option> 66 <option value="TMT2plex">TMT 2-plex</option>
67 <option value="TMT6plex">TMT 6-plex</option> 67 <option value="TMT6plex">TMT 6-plex</option>
68 <option value="TMT10plex">TMT 10-plex</option> 68 <option value="TMT10plex">TMT 10-plex</option>
69 <option value="TMT11plex">TMT 11-plex</option>
70 <option value="TMTpro16plex">TMTpro 16-plex</option>
69 </param> 71 </param>
70 <when value="ITRAQ4plex"><expand macro="IsobaricQuantitationOptions" /></when> 72 <when value="ITRAQ4plex"><expand macro="IsobaricQuantitationOptions" /></when>
71 <when value="ITRAQ8plex"><expand macro="IsobaricQuantitationOptions" /></when> 73 <when value="ITRAQ8plex"><expand macro="IsobaricQuantitationOptions" /></when>
72 <when value="TMT2plex"><expand macro="IsobaricQuantitationOptions" /></when> 74 <when value="TMT2plex"><expand macro="IsobaricQuantitationOptions" /></when>
73 <when value="TMT6plex"><expand macro="IsobaricQuantitationOptions" /></when> 75 <when value="TMT6plex"><expand macro="IsobaricQuantitationOptions" /></when>
74 <when value="TMT10plex"><expand macro="IsobaricQuantitationOptions" tolerance="0.003" /></when> 76 <when value="TMT10plex"><expand macro="IsobaricQuantitationOptions" tolerance="0.003" /></when>
77 <when value="TMT11plex"><expand macro="IsobaricQuantitationOptions" tolerance="0.003" /></when>
78 <when value="TMTpro16plex"><expand macro="IsobaricQuantitationOptions" tolerance="0.003" /></when>
75 79
76 <when value="None"></when> 80 <when value="None"></when>
77 <when value="LabelFree"></when> 81 <when value="LabelFree"></when>
78 </conditional> 82 </conditional>
79 </when> 83 </when>