Mercurial > repos > galaxyp > idpqonvert
view test-data/201208-378803-cm.pep.xml @ 8:fb6ce5041417 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit baf4379f0cf287238a4c988723611fe0983917db
| author | galaxyp |
|---|---|
| date | Tue, 21 Nov 2017 13:18:32 -0500 |
| parents | aec819a9068b |
| children |
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<?xml version="1.0" encoding="UTF-8"?> <msms_pipeline_analysis date="2014-09-19T11:13:55" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd" summary_xml="C:\idpicker\branches\IDPicker-3\TestData\201208-378803.pep.xml"> <msms_run_summary base_name="C:\idpicker\branches\IDPicker-3\TestData\201208-378803" msManufacturer="unknown" msModel="unknown" raw_data_type="raw" raw_data=".mzML"> <sample_enzyme name="Trypsin/P"> <specificity cut="KR" no_cut="-" sense="C"/> </sample_enzyme> <search_summary base_name="C:\idpicker\branches\IDPicker-3\TestData\201208-378803" search_engine="Comet" search_engine_version="2014.02 rev. 0" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1"> <search_database local_path="cow.protein.PRG2012-subset.fasta" type="AA"/> <enzymatic_search_constraint enzyme="Trypsin/P" max_num_internal_cleavages="2" min_number_termini="1"/> <aminoacid_modification aminoacid="M" massdiff="15.994900" mass="147.035385" variable="Y" symbol="*"/> <aminoacid_modification aminoacid="Q" massdiff="-17.026000" mass="111.032578" variable="Y" symbol="#"/> <aminoacid_modification aminoacid="Q" massdiff="0.984016" mass="129.042594" variable="Y" symbol="@"/> <aminoacid_modification aminoacid="N" massdiff="0.984016" mass="115.026943" variable="Y" symbol="@"/> <aminoacid_modification aminoacid="C" massdiff="58.005480" mass="161.014665" variable="N"/> <parameter name="# comet_version " value="2014.02"/> <parameter name="activation_method" value="ALL"/> <parameter name="add_A_alanine" value="0.000000"/> <parameter name="add_B_user_amino_acid" value="0.000000"/> <parameter name="add_C_cysteine" value="58.005480"/> <parameter name="add_Cterm_peptide" value="0.000000"/> <parameter name="add_Cterm_protein" value="0.000000"/> <parameter name="add_D_aspartic_acid" value="0.000000"/> 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