Mercurial > repos > galaxyp > idpquery

annotate test-data/201208-378803-msgf.mzid @ 3:42dc8e9e58d8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 82368da0ad9f7dcce4ce99a15c749eed915606ee
author galaxyp
date Thu, 02 Nov 2017 14:15:35 -0400
parents 032c02d10694
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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1 <?xml version="1.0" encoding="UTF-8"?>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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2 <MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2014-09-05T13:19:45" >
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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4 <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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5 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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6 <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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7 </cvList>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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8 <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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9 <AnalysisSoftware version="Beta (v10072)" name="MS-GF+" id="ID_software">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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10 <SoftwareName>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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11 <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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12 </SoftwareName>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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13 </AnalysisSoftware>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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14 </AnalysisSoftwareList>
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15 <SequenceCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
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16 <DBSequence accession="gi|30794280|ref|NP_851335.1|" searchDatabase_ref="SearchDB_1" length="607" id="DBSeq43937">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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17 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|30794280|ref|NP_851335.1| serum albumin precursor [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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18 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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19 <DBSequence accession="gi|528993971|ref|XP_005219929.1|" searchDatabase_ref="SearchDB_1" length="768" id="DBSeq31093">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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20 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528993971|ref|XP_005219929.1| PREDICTED: lactoperoxidase isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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21 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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22 <DBSequence accession="gi|528993973|ref|XP_005219930.1|" searchDatabase_ref="SearchDB_1" length="712" id="DBSeq31862">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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23 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528993973|ref|XP_005219930.1| PREDICTED: lactoperoxidase isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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24 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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25 <DBSequence accession="gi|528993975|ref|XP_005219931.1|" searchDatabase_ref="SearchDB_1" length="685" id="DBSeq32575">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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26 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528993975|ref|XP_005219931.1| PREDICTED: lactoperoxidase isoform X3 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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27 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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28 <DBSequence accession="gi|27806851|ref|NP_776358.1|" searchDatabase_ref="SearchDB_1" length="712" id="DBSeq47665">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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29 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|27806851|ref|NP_776358.1| lactoperoxidase precursor [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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30 </DBSequence>
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31 <DBSequence accession="gi|27806963|ref|NP_776953.1|" searchDatabase_ref="SearchDB_1" length="222" id="DBSeq46622">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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32 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|27806963|ref|NP_776953.1| alpha-S2-casein precursor [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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33 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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34 <DBSequence accession="XXX_gi|528968104|ref|XP_005212567.1|" searchDatabase_ref="SearchDB_1" length="815" id="DBSeq83632"/>
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35 <DBSequence accession="XXX_gi|528968106|ref|XP_005212568.1|" searchDatabase_ref="SearchDB_1" length="811" id="DBSeq84448"/>
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36 <DBSequence accession="XXX_gi|528968108|ref|XP_005212569.1|" searchDatabase_ref="SearchDB_1" length="766" id="DBSeq85260"/>
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37 <DBSequence accession="XXX_gi|115497338|ref|NP_001069884.1|" searchDatabase_ref="SearchDB_1" length="626" id="DBSeq93486"/>
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38 <DBSequence accession="XXX_gi|528944676|ref|XP_005204734.1|" searchDatabase_ref="SearchDB_1" length="7610" id="DBSeq65480"/>
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39 <DBSequence accession="XXX_gi|528944678|ref|XP_005204735.1|" searchDatabase_ref="SearchDB_1" length="5498" id="DBSeq73091"/>
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40 <DBSequence accession="XXX_gi|219804516|ref|NP_001137332.1|" searchDatabase_ref="SearchDB_1" length="5422" id="DBSeq94489"/>
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41 <DBSequence accession="gi|528944676|ref|XP_005204734.1|" searchDatabase_ref="SearchDB_1" length="7610" id="DBSeq9505">
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42 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528944676|ref|XP_005204734.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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43 </DBSequence>
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44 <DBSequence accession="gi|528944678|ref|XP_005204735.1|" searchDatabase_ref="SearchDB_1" length="5498" id="DBSeq17116">
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45 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528944678|ref|XP_005204735.1| PREDICTED: microtubule-actin cross-linking factor 1 isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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46 </DBSequence>
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47 <DBSequence accession="gi|219804516|ref|NP_001137332.1|" searchDatabase_ref="SearchDB_1" length="5422" id="DBSeq38514">
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48 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|219804516|ref|NP_001137332.1| microtubule-actin cross-linking factor 1 [Bos taurus]" name="protein description"/>
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49 </DBSequence>
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50 <DBSequence accession="gi|32880221|ref|NP_872593.1|" searchDatabase_ref="SearchDB_1" length="558" id="DBSeq47106">
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51 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|32880221|ref|NP_872593.1| glutamate dehydrogenase 1, mitochondrial precursor [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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52 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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53 <DBSequence accession="gi|528968104|ref|XP_005212567.1|" searchDatabase_ref="SearchDB_1" length="815" id="DBSeq27657">
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54 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528968104|ref|XP_005212567.1| PREDICTED: exocyst complex component 6B isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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55 </DBSequence>
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56 <DBSequence accession="gi|528968106|ref|XP_005212568.1|" searchDatabase_ref="SearchDB_1" length="811" id="DBSeq28473">
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57 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528968106|ref|XP_005212568.1| PREDICTED: exocyst complex component 6B isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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58 </DBSequence>
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59 <DBSequence accession="gi|528968108|ref|XP_005212569.1|" searchDatabase_ref="SearchDB_1" length="766" id="DBSeq29285">
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60 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528968108|ref|XP_005212569.1| PREDICTED: exocyst complex component 6B isoform X3 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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61 </DBSequence>
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62 <DBSequence accession="gi|528935739|ref|XP_005201142.1|" searchDatabase_ref="SearchDB_1" length="154" id="DBSeq9350">
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63 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528935739|ref|XP_005201142.1| PREDICTED: superoxide dismutase [Cu-Zn] isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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64 </DBSequence>
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65 <DBSequence accession="gi|27807109|ref|NP_777040.1|" searchDatabase_ref="SearchDB_1" length="152" id="DBSeq46469">
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66 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|27807109|ref|NP_777040.1| superoxide dismutase [Cu-Zn] [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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67 </DBSequence>
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68 <DBSequence accession="gi|30466252|ref|NP_848667.1|" searchDatabase_ref="SearchDB_1" length="260" id="DBSeq46845">
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69 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|30466252|ref|NP_848667.1| carbonic anhydrase 2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
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70 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
71 <DBSequence accession="XXX_gi|528921178|ref|XP_592304.7|" searchDatabase_ref="SearchDB_1" length="1252" id="DBSeq60575"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
72 <DBSequence accession="XXX_gi|528921180|ref|XP_005195747.1|" searchDatabase_ref="SearchDB_1" length="1197" id="DBSeq61828"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
73 <DBSequence accession="XXX_gi|528995523|ref|XP_002695913.2|" searchDatabase_ref="SearchDB_1" length="1299" id="DBSeq89848"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
74 <DBSequence accession="XXX_gi|358414198|ref|XP_002700672.2|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq104353"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
75 <DBSequence accession="XXX_gi|528966552|ref|XP_005211956.1|" searchDatabase_ref="SearchDB_1" length="1131" id="DBSeq107227"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
76 <DBSequence accession="XXX_gi|528966554|ref|XP_005211957.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq108359"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
77 <DBSequence accession="XXX_gi|297479727|ref|XP_002690982.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq109459"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
78 <DBSequence accession="gi|358418103|ref|XP_600387.4|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq7051">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
79 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|358418103|ref|XP_600387.4| PREDICTED: rab effector MyRIP isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
80 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
81 <DBSequence accession="gi|528923273|ref|XP_005196452.1|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq7906">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
82 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528923273|ref|XP_005196452.1| PREDICTED: rab effector MyRIP isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
83 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
84 <DBSequence accession="gi|297488451|ref|XP_002696970.1|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq35173">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
85 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|297488451|ref|XP_002696970.1| PREDICTED: rab effector MyRIP isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
86 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
87 <DBSequence accession="gi|529000951|ref|XP_005222651.1|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq36028">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
88 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|529000951|ref|XP_005222651.1| PREDICTED: rab effector MyRIP isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
89 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
90 <DBSequence accession="XXX_gi|528928354|ref|XP_005193233.1|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq64736"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
91 <DBSequence accession="XXX_gi|30794280|ref|NP_851335.1|" searchDatabase_ref="SearchDB_1" length="607" id="DBSeq99912"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
92 <DBSequence accession="XXX_gi|27806963|ref|NP_776953.1|" searchDatabase_ref="SearchDB_1" length="222" id="DBSeq102597"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
93 <DBSequence accession="gi|528921178|ref|XP_592304.7|" searchDatabase_ref="SearchDB_1" length="1252" id="DBSeq4600">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
94 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528921178|ref|XP_592304.7| PREDICTED: protein flightless-1 homolog isoformX1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
95 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
96 <DBSequence accession="gi|528921180|ref|XP_005195747.1|" searchDatabase_ref="SearchDB_1" length="1197" id="DBSeq5853">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
97 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528921180|ref|XP_005195747.1| PREDICTED: protein flightless-1 homolog isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
98 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
99 <DBSequence accession="gi|528995523|ref|XP_002695913.2|" searchDatabase_ref="SearchDB_1" length="1299" id="DBSeq33873">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
100 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528995523|ref|XP_002695913.2| PREDICTED: protein flightless-1 homolog [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
101 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
102 <DBSequence accession="gi|528928354|ref|XP_005193233.1|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq8761">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
103 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528928354|ref|XP_005193233.1| PREDICTED: fibrous sheath-interacting protein 2-like [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
104 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
105 <DBSequence accession="XXX_gi|139948503|ref|NP_001077142.1|" searchDatabase_ref="SearchDB_1" length="627" id="DBSeq92858"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
106 <DBSequence accession="gi|528954392|ref|XP_005208526.1|" searchDatabase_ref="SearchDB_1" length="128" id="DBSeq23875">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
107 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528954392|ref|XP_005208526.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
108 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
109 <DBSequence accession="gi|115496708|ref|NP_001069831.1|" searchDatabase_ref="SearchDB_1" length="128" id="DBSeq46340">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
110 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|115496708|ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
111 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
112 <DBSequence accession="XXX_gi|528908802|ref|XP_005199340.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq56223"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
113 <DBSequence accession="XXX_gi|528908804|ref|XP_005199341.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq56840"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
114 <DBSequence accession="XXX_gi|528908806|ref|XP_005199342.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq57457"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
115 <DBSequence accession="XXX_gi|528908808|ref|XP_005199343.1|" searchDatabase_ref="SearchDB_1" length="615" id="DBSeq58074"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
116 <DBSequence accession="XXX_gi|528908810|ref|XP_005199344.1|" searchDatabase_ref="SearchDB_1" length="596" id="DBSeq58690"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
117 <DBSequence accession="XXX_gi|528908812|ref|XP_609847.5|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq59287"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
118 <DBSequence accession="XXX_gi|528959647|ref|XP_005210511.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq79979"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
119 <DBSequence accession="XXX_gi|528959649|ref|XP_005210512.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq80596"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
120 <DBSequence accession="XXX_gi|528959651|ref|XP_005210513.1|" searchDatabase_ref="SearchDB_1" length="616" id="DBSeq81213"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
121 <DBSequence accession="XXX_gi|528959653|ref|XP_005210514.1|" searchDatabase_ref="SearchDB_1" length="615" id="DBSeq81830"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
122 <DBSequence accession="XXX_gi|528959655|ref|XP_005210515.1|" searchDatabase_ref="SearchDB_1" length="596" id="DBSeq82446"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
123 <DBSequence accession="XXX_gi|528959657|ref|XP_002689899.2|" searchDatabase_ref="SearchDB_1" length="588" id="DBSeq83043"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
124 <DBSequence accession="gi|115497338|ref|NP_001069884.1|" searchDatabase_ref="SearchDB_1" length="626" id="DBSeq37511">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
125 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|115497338|ref|NP_001069884.1| exocyst complex component 6B [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
126 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
127 <DBSequence accession="gi|119924469|ref|XP_001252524.1|" searchDatabase_ref="SearchDB_1" length="376" id="DBSeq49478">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
128 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|119924469|ref|XP_001252524.1| PREDICTED: pregnancy-associated glycoprotein 2-like [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
129 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
130 <DBSequence accession="gi|358414198|ref|XP_002700672.2|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq48378">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
131 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|358414198|ref|XP_002700672.2| PREDICTED: LOW QUALITY PROTEIN: solute carrier family 12 member 1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
132 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
133 <DBSequence accession="gi|528966552|ref|XP_005211956.1|" searchDatabase_ref="SearchDB_1" length="1131" id="DBSeq51252">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
134 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528966552|ref|XP_005211956.1| PREDICTED: solute carrier family 12 member 1 isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
135 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
136 <DBSequence accession="gi|528966554|ref|XP_005211957.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq52384">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
137 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528966554|ref|XP_005211957.1| PREDICTED: solute carrier family 12 member 1 isoform X3 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
138 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
139 <DBSequence accession="gi|297479727|ref|XP_002690982.1|" searchDatabase_ref="SearchDB_1" length="1099" id="DBSeq53484">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
140 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|297479727|ref|XP_002690982.1| PREDICTED: solute carrier family 12 member 1 isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
141 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
142 <DBSequence accession="gi|529012038|ref|XP_005226889.1|" searchDatabase_ref="SearchDB_1" length="337" id="DBSeq54584">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
143 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|529012038|ref|XP_005226889.1| PREDICTED: pregnancy-associated glycoprotein 2 isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
144 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
145 <DBSequence accession="gi|28849951|ref|NP_788787.1|" searchDatabase_ref="SearchDB_1" length="376" id="DBSeq55599">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
146 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|28849951|ref|NP_788787.1| pregnancy-associated glycoprotein 2 precursor [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
147 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
148 <DBSequence accession="gi|528961840|ref|XP_005211303.1|" searchDatabase_ref="SearchDB_1" length="719" id="DBSeq49855">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
149 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528961840|ref|XP_005211303.1| PREDICTED: protein KHNYN isoform X1 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
150 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
151 <DBSequence accession="gi|528961845|ref|XP_005211304.1|" searchDatabase_ref="SearchDB_1" length="676" id="DBSeq50575">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
152 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|528961845|ref|XP_005211304.1| PREDICTED: protein KHNYN isoform X2 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
153 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
154 <DBSequence accession="gi|156523214|ref|NP_001096021.1|" searchDatabase_ref="SearchDB_1" length="676" id="DBSeq54922">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
155 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|156523214|ref|NP_001096021.1| protein KHNYN [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
156 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
157 <DBSequence accession="XXX_gi|528954392|ref|XP_005208526.1|" searchDatabase_ref="SearchDB_1" length="128" id="DBSeq79850"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
158 <DBSequence accession="XXX_gi|115496708|ref|NP_001069831.1|" searchDatabase_ref="SearchDB_1" length="128" id="DBSeq102315"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
159 <DBSequence accession="XXX_gi|358418103|ref|XP_600387.4|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq63026"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
160 <DBSequence accession="XXX_gi|528923273|ref|XP_005196452.1|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq63881"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
161 <DBSequence accession="XXX_gi|297488451|ref|XP_002696970.1|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq91148"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
162 <DBSequence accession="XXX_gi|529000951|ref|XP_005222651.1|" searchDatabase_ref="SearchDB_1" length="854" id="DBSeq92003"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
163 <DBSequence accession="gi|139948503|ref|NP_001077142.1|" searchDatabase_ref="SearchDB_1" length="627" id="DBSeq36883">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
164 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="gi|139948503|ref|NP_001077142.1| uncharacterized protein LOC512219 [Bos taurus]" name="protein description"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
165 </DBSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
166 <DBSequence accession="XXX_gi|28849955|ref|NP_788795.1|" searchDatabase_ref="SearchDB_1" length="375" id="DBSeq94113"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
167 <DBSequence accession="XXX_gi|528953234|ref|XP_005208080.1|" searchDatabase_ref="SearchDB_1" length="213" id="DBSeq78837"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
168 <DBSequence accession="XXX_gi|528953236|ref|XP_005208081.1|" searchDatabase_ref="SearchDB_1" length="206" id="DBSeq79051"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
169 <DBSequence accession="XXX_gi|528953238|ref|XP_005208082.1|" searchDatabase_ref="SearchDB_1" length="206" id="DBSeq79258"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
170 <DBSequence accession="XXX_gi|528953240|ref|XP_005208083.1|" searchDatabase_ref="SearchDB_1" length="206" id="DBSeq79465"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
171 <DBSequence accession="XXX_gi|30794348|ref|NP_851372.1|" searchDatabase_ref="SearchDB_1" length="214" id="DBSeq100983"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
172 <DBSequence accession="XXX_gi|528969819|ref|XP_005213230.1|" searchDatabase_ref="SearchDB_1" length="178" id="DBSeq86184"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
173 <DBSequence accession="XXX_gi|87196497|ref|NP_776354.2|" searchDatabase_ref="SearchDB_1" length="178" id="DBSeq101198"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
174 <Peptide id="Pep1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
175 <PeptideSequence>YICDNQDTISSK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
176 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
177 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
178 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
179 <Modification monoisotopicMassDelta="0.984016" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
180 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
181 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
182 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
183 <Peptide id="Pep2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
184 <PeptideSequence>LVNELTEFAK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
185 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
186 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
187 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
188 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
189 <Peptide id="Pep3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
190 <PeptideSequence>CCTESLVNR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
191 <Modification monoisotopicMassDelta="58.00548" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
192 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
193 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
194 <Modification monoisotopicMassDelta="58.00548" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
195 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
196 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
197 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
198 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
199 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
200 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
201 <Peptide id="Pep4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
202 <PeptideSequence>CDENSPYR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
203 <Modification monoisotopicMassDelta="58.00548" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
204 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
205 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
206 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
207 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
208 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
209 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
210 <Peptide id="Pep5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
211 <PeptideSequence>NAVPITPTLNR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
212 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
213 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
214 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
215 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
216 <Peptide id="Pep6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
217 <PeptideSequence>TITGDCNNR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
218 <Modification monoisotopicMassDelta="58.00548" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
219 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
220 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
221 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
222 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
223 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
224 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
225 <Peptide id="Pep7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
226 <PeptideSequence>TITGDCNNR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
227 <Modification monoisotopicMassDelta="58.00548" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
228 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
229 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
230 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
231 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
232 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
233 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
234 <Peptide id="Pep8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
235 <PeptideSequence>ISELFDKLDSMSVDK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
236 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
237 <Peptide id="Pep9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
238 <PeptideSequence>NEMFQQLK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
239 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
240 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
241 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
242 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
243 <Peptide id="Pep10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
244 <PeptideSequence>KQTALVELLK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
245 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
246 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
247 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
248 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
249 <Peptide id="Pep11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
250 <PeptideSequence>GFCGLSQPK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
251 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
252 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
253 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
254 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
255 <Peptide id="Pep12">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
256 <PeptideSequence>EFENWLERSEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
257 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
258 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
259 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
260 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
261 <Peptide id="Pep13">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
262 <PeptideSequence>SVQESLER</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
263 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
264 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
265 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
266 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
267 <Peptide id="Pep14">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
268 <PeptideSequence>KLYGTTTFKDAR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
269 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
270 <Peptide id="Pep15">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
271 <PeptideSequence>LQDRWHR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
272 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
273 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
274 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
275 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
276 <Peptide id="Pep16">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
277 <PeptideSequence>ELQEYQNLVR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
278 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
279 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
280 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
281 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
282 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
283 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
284 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
285 <Peptide id="Pep17">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
286 <PeptideSequence>PKNDPKLKTQGK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
287 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
288 <Peptide id="Pep18">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
289 <PeptideSequence>PKNDPKLKTQGK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
290 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
291 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
292 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
293 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
294 <Peptide id="Pep19">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
295 <PeptideSequence>HVGDLGNVTADK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
296 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
297 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
298 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
299 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
300 <Peptide id="Pep20">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
301 <PeptideSequence>QLQTGGIIDTVTGR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
302 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
303 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
304 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
305 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
306 <Peptide id="Pep21">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
307 <PeptideSequence>QLQTGGIIDTVTGR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
308 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
309 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
310 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
311 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
312 <Peptide id="Pep22">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
313 <PeptideSequence>NVFTRQLCLEHDEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
314 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
315 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
316 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
317 <Modification monoisotopicMassDelta="58.00548" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
318 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
319 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
320 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
321 <Peptide id="Pep23">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
322 <PeptideSequence>EQKWHVVSSKMEER</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
323 <Modification monoisotopicMassDelta="15.9949" location="11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
324 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
325 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
326 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
327 <Peptide id="Pep24">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
328 <PeptideSequence>NVFTRQLCLEHDEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
329 <Modification monoisotopicMassDelta="58.00548" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
330 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
331 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
332 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
333 <Peptide id="Pep25">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
334 <PeptideSequence>DFPIANGER</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
335 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
336 <Peptide id="Pep26">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
337 <PeptideSequence>ALAQRFTSWAHFCR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
338 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
339 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
340 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
341 <Modification monoisotopicMassDelta="58.00548" location="13">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
342 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
343 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
344 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
345 <Peptide id="Pep27">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
346 <PeptideSequence>LGRQFQQIR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
347 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
348 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
349 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
350 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
351 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
352 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
353 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
354 <Peptide id="Pep28">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
355 <PeptideSequence>EEVMQGEEPNLEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
356 <Modification monoisotopicMassDelta="0.984016" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
357 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
358 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
359 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
360 <Peptide id="Pep29">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
361 <PeptideSequence>PTAEFQDR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
362 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
363 <Peptide id="Pep30">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
364 <PeptideSequence>EPISVSSQQMLK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
365 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
366 <Peptide id="Pep31">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
367 <PeptideSequence>VICQPRFNK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
368 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
369 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
370 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
371 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
372 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
373 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
374 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
375 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
376 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
377 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
378 <Peptide id="Pep32">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
379 <PeptideSequence>NEGIQEVQ</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
380 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
381 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
382 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
383 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
384 <Peptide id="Pep33">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
385 <PeptideSequence>RRCGDCK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
386 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
387 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
388 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
389 <Modification monoisotopicMassDelta="58.00548" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
390 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
391 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
392 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
393 <Peptide id="Pep34">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
394 <PeptideSequence>RMMESR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
395 <Modification monoisotopicMassDelta="15.9949" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
396 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
397 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
398 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
399 <Peptide id="Pep35">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
400 <PeptideSequence>TSDATEMFQTVMDR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
401 <Modification monoisotopicMassDelta="15.9949" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
402 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
403 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
404 <Modification monoisotopicMassDelta="15.9949" location="12">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
405 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
406 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
407 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
408 <Peptide id="Pep36">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
409 <PeptideSequence>YNNSVDPR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
410 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
411 <Peptide id="Pep37">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
412 <PeptideSequence>FEDLAMWGGGVR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
413 <Modification monoisotopicMassDelta="15.9949" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
414 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
415 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
416 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
417 <Peptide id="Pep38">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
418 <PeptideSequence>QLEGRLQDLR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
419 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
420 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
421 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
422 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
423 <Peptide id="Pep39">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
424 <PeptideSequence>VWVCCVCQQARVLR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
425 <Modification monoisotopicMassDelta="58.00548" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
426 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
427 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
428 <Modification monoisotopicMassDelta="58.00548" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
429 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
430 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
431 <Modification monoisotopicMassDelta="58.00548" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
432 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
433 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
434 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
435 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
436 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
437 <Modification monoisotopicMassDelta="0.984016" location="9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
438 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
439 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
440 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
441 <Peptide id="Pep40">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
442 <PeptideSequence>LIGSDQESK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
443 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
444 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
445 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
446 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
447 <Peptide id="Pep41">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
448 <PeptideSequence>LAEAEKEGR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
449 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
450 <Peptide id="Pep42">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
451 <PeptideSequence>GLKEFQDCNQK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
452 <Modification monoisotopicMassDelta="58.00548" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
453 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
454 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
455 <Modification monoisotopicMassDelta="0.984016" location="9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
456 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
457 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
458 <Modification monoisotopicMassDelta="0.984016" location="10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
459 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
460 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
461 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
462 <Peptide id="Pep43">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
463 <PeptideSequence>KVQDWPN</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
464 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
465 <Peptide id="Pep44">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
466 <PeptideSequence>MMEQQATTE</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
467 <Modification monoisotopicMassDelta="15.9949" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
468 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
469 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
470 <Modification monoisotopicMassDelta="15.9949" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
471 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
472 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
473 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
474 <Peptide id="Pep45">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
475 <PeptideSequence>DYELQLMTYK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
476 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
477 <Peptide id="Pep46">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
478 <PeptideSequence>SSDEETLSER</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
479 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
480 <Peptide id="Pep47">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
481 <PeptideSequence>EVEDEGFLR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
482 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
483 <Peptide id="Pep48">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
484 <PeptideSequence>HSFLEDMSDK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
485 <Modification monoisotopicMassDelta="15.9949" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
486 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
487 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
488 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
489 <Peptide id="Pep49">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
490 <PeptideSequence>DLPFLSNEYK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
491 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
492 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
493 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
494 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
495 <Peptide id="Pep50">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
496 <PeptideSequence>PYDDDAEYMK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
497 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
498 <Peptide id="Pep51">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
499 <PeptideSequence>NDQPHFDK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
500 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
501 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
502 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
503 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
504 <Peptide id="Pep52">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
505 <PeptideSequence>FSDHQAHIEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
506 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
507 <Peptide id="Pep53">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
508 <PeptideSequence>LMHDPSR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
509 <Modification monoisotopicMassDelta="15.9949" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
510 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
511 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
512 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
513 <Peptide id="Pep54">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
514 <PeptideSequence>AEMFEHLSEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
515 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
516 <Peptide id="Pep55">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
517 <PeptideSequence>AAQGALQPSL</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
518 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
519 <Peptide id="Pep56">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
520 <PeptideSequence>LETQYCK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
521 <Modification monoisotopicMassDelta="58.00548" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
522 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
523 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
524 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
525 <Peptide id="Pep57">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
526 <PeptideSequence>QQSEVFAK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
527 <Modification monoisotopicMassDelta="-17.026" location="0">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
528 <cvParam accession="UNIMOD:28" cvRef="UNIMOD" name="Gln-&gt;pyro-Glu"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
529 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
530 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
531 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
532 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
533 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
534 <Peptide id="Pep58">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
535 <PeptideSequence>QRSEMMRK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
536 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
537 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
538 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
539 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
540 <Peptide id="Pep59">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
541 <PeptideSequence>QSIDIEDDKKENK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
542 <Modification monoisotopicMassDelta="-17.026" location="0">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
543 <cvParam accession="UNIMOD:28" cvRef="UNIMOD" name="Gln-&gt;pyro-Glu"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
544 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
545 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
546 <Peptide id="Pep60">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
547 <PeptideSequence>YNCDKMICRK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
548 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
549 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
550 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
551 <Modification monoisotopicMassDelta="58.00548" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
552 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
553 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
554 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
555 <Peptide id="Pep61">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
556 <PeptideSequence>LQDSMAQDEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
557 <Modification monoisotopicMassDelta="15.9949" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
558 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
559 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
560 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
561 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
562 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
563 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
564 <Peptide id="Pep62">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
565 <PeptideSequence>EGSHTRQHRIL</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
566 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
567 <Peptide id="Pep63">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
568 <PeptideSequence>QSHAILMEKR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
569 <Modification monoisotopicMassDelta="-17.026" location="0">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
570 <cvParam accession="UNIMOD:28" cvRef="UNIMOD" name="Gln-&gt;pyro-Glu"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
571 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
572 <Modification monoisotopicMassDelta="15.9949" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
573 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
574 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
575 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
576 <Peptide id="Pep64">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
577 <PeptideSequence>FCKVMVDNIPKLR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
578 <Modification monoisotopicMassDelta="58.00548" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
579 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
580 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
581 <Modification monoisotopicMassDelta="15.9949" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
582 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
583 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
584 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
585 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
586 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
587 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
588 <Peptide id="Pep65">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
589 <PeptideSequence>DKNSCISIFQ</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
590 <Modification monoisotopicMassDelta="58.00548" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
591 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
592 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
593 <Modification monoisotopicMassDelta="0.984016" location="10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
594 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
595 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
596 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
597 <Peptide id="Pep66">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
598 <PeptideSequence>ARWQEYQSR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
599 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
600 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
601 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
602 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
603 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
604 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
605 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
606 <Peptide id="Pep67">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
607 <PeptideSequence>ARWQEYQSR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
608 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
609 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
610 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
611 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
612 <Peptide id="Pep68">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
613 <PeptideSequence>GGVYIRLKCDKWKK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
614 <Modification monoisotopicMassDelta="58.00548" location="9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
615 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
616 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
617 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
618 <Peptide id="Pep69">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
619 <PeptideSequence>DFHPQDNK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
620 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
621 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
622 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
623 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
624 <Peptide id="Pep70">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
625 <PeptideSequence>LDGIKTRYAD</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
626 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
627 <Peptide id="Pep71">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
628 <PeptideSequence>EAQCCEQFVGNYK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
629 <Modification monoisotopicMassDelta="58.00548" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
630 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
631 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
632 <Modification monoisotopicMassDelta="58.00548" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
633 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
634 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
635 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
636 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
637 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
638 <Modification monoisotopicMassDelta="0.984016" location="11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
639 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
640 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
641 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
642 <Peptide id="Pep72">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
643 <PeptideSequence>LQSYLEM</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
644 <Modification monoisotopicMassDelta="15.9949" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
645 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
646 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
647 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
648 <Peptide id="Pep73">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
649 <PeptideSequence>DAMETASR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
650 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
651 <Peptide id="Pep74">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
652 <PeptideSequence>EQIGENK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
653 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
654 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
655 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
656 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
657 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
658 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
659 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
660 <Peptide id="Pep75">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
661 <PeptideSequence>LMLCLPVLEMYSK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
662 <Modification monoisotopicMassDelta="58.00548" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
663 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
664 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
665 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
666 <Peptide id="Pep76">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
667 <PeptideSequence>YINDKCL</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
668 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
669 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
670 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
671 <Modification monoisotopicMassDelta="58.00548" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
672 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
673 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
674 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
675 <Peptide id="Pep77">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
676 <PeptideSequence>ALELTTVEDHVKNFR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
677 <Modification monoisotopicMassDelta="0.984016" location="13">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
678 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
679 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
680 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
681 <Peptide id="Pep78">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
682 <PeptideSequence>QQEEMR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
683 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
684 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
685 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
686 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
687 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
688 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
689 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
690 <Peptide id="Pep79">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
691 <PeptideSequence>LEECEQ</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
692 <Modification monoisotopicMassDelta="58.00548" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
693 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
694 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
695 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
696 <Peptide id="Pep80">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
697 <PeptideSequence>SPDHMLKSTISVK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
698 <Modification monoisotopicMassDelta="15.9949" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
699 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
700 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
701 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
702 <Peptide id="Pep81">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
703 <PeptideSequence>VVRMTQQQENPK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
704 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
705 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
706 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
707 <Modification monoisotopicMassDelta="0.984016" location="10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
708 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
709 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
710 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
711 <Peptide id="Pep82">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
712 <PeptideSequence>QFMENK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
713 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
714 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
715 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
716 <Modification monoisotopicMassDelta="0.984016" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
717 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
718 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
719 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
720 <Peptide id="Pep83">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
721 <PeptideSequence>VVILPLKKMKTLR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
722 <Modification monoisotopicMassDelta="15.9949" location="9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
723 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
724 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
725 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
726 <Peptide id="Pep84">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
727 <PeptideSequence>EMKDTSR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
728 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
729 <Peptide id="Pep85">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
730 <PeptideSequence>STDKMER</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
731 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
732 <Peptide id="Pep86">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
733 <PeptideSequence>NLLNNFLEEQAYR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
734 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
735 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
736 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
737 <Modification monoisotopicMassDelta="0.984016" location="10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
738 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
739 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
740 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
741 <Peptide id="Pep87">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
742 <PeptideSequence>NLLNNFLEEQAYR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
743 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
744 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
745 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
746 <Modification monoisotopicMassDelta="0.984016" location="10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
747 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
748 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
749 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
750 <Peptide id="Pep88">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
751 <PeptideSequence>VDFILQREPYCR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
752 <Modification monoisotopicMassDelta="58.00548" location="11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
753 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
754 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
755 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
756 <Peptide id="Pep89">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
757 <PeptideSequence>VDFILQREPYCR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
758 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
759 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
760 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
761 <Modification monoisotopicMassDelta="58.00548" location="11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
762 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
763 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
764 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
765 <Peptide id="Pep90">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
766 <PeptideSequence>KAETCNAQDADEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
767 <Modification monoisotopicMassDelta="58.00548" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
768 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
769 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
770 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
771 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
772 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
773 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
774 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
775 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
776 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
777 <Peptide id="Pep91">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
778 <PeptideSequence>QVAQCKCAK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
779 <Modification monoisotopicMassDelta="-17.026" location="0">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
780 <cvParam accession="UNIMOD:28" cvRef="UNIMOD" name="Gln-&gt;pyro-Glu"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
781 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
782 <Modification monoisotopicMassDelta="58.00548" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
783 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
784 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
785 <Modification monoisotopicMassDelta="58.00548" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
786 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
787 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
788 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
789 <Peptide id="Pep92">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
790 <PeptideSequence>RHYSEAAADR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
791 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
792 <Peptide id="Pep93">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
793 <PeptideSequence>ARHQELLSQQ</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
794 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
795 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
796 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
797 <Modification monoisotopicMassDelta="0.984016" location="9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
798 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
799 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
800 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
801 <Peptide id="Pep94">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
802 <PeptideSequence>QDVFRSLQDT</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
803 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
804 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
805 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
806 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
807 <Peptide id="Pep95">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
808 <PeptideSequence>EMNSGMAK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
809 <Modification monoisotopicMassDelta="15.9949" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
810 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
811 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
812 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
813 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
814 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
815 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
816 <Peptide id="Pep96">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
817 <PeptideSequence>WVDFDFNAFEK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
818 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
819 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
820 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
821 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
822 <Peptide id="Pep97">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
823 <PeptideSequence>RCIMKDCNYKQ</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
824 <Modification monoisotopicMassDelta="58.00548" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
825 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
826 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
827 <Modification monoisotopicMassDelta="58.00548" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
828 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
829 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
830 <Modification monoisotopicMassDelta="0.984016" location="8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
831 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
832 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
833 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
834 <Peptide id="Pep98">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
835 <PeptideSequence>DLGEEHF</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
836 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
837 <Peptide id="Pep99">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
838 <PeptideSequence>MDGFTGCR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
839 <Modification monoisotopicMassDelta="15.9949" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
840 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
841 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
842 <Modification monoisotopicMassDelta="58.00548" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
843 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
844 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
845 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
846 <Peptide id="Pep100">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
847 <PeptideSequence>LDQMVFFWED</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
848 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
849 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
850 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
851 <Modification monoisotopicMassDelta="15.9949" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
852 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
853 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
854 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
855 <Peptide id="Pep101">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
856 <PeptideSequence>RIYLDQMGR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
857 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
858 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
859 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
860 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
861 <Peptide id="Pep102">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
862 <PeptideSequence>CESCVYPK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
863 <Modification monoisotopicMassDelta="58.00548" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
864 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
865 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
866 <Modification monoisotopicMassDelta="58.00548" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
867 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
868 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
869 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
870 <Peptide id="Pep103">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
871 <PeptideSequence>QPWEPEDEAR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
872 <Modification monoisotopicMassDelta="-17.026" location="0">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
873 <cvParam accession="UNIMOD:28" cvRef="UNIMOD" name="Gln-&gt;pyro-Glu"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
874 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
875 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
876 <Peptide id="Pep104">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
877 <PeptideSequence>YEGLKEFQDCNQK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
878 <Modification monoisotopicMassDelta="58.00548" location="10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
879 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
880 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
881 <Modification monoisotopicMassDelta="0.984016" location="11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
882 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
883 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
884 <Modification monoisotopicMassDelta="0.984016" location="12">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
885 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
886 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
887 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
888 <Peptide id="Pep105">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
889 <PeptideSequence>FNCMKEIER</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
890 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
891 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
892 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
893 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
894 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
895 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
896 <Modification monoisotopicMassDelta="15.9949" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
897 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
898 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
899 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
900 <Peptide id="Pep106">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
901 <PeptideSequence>QPEQNFSK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
902 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
903 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
904 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
905 <Modification monoisotopicMassDelta="0.984016" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
906 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
907 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
908 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
909 <Peptide id="Pep107">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
910 <PeptideSequence>ACQVYIQH</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
911 <Modification monoisotopicMassDelta="58.00548" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
912 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
913 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
914 <Modification monoisotopicMassDelta="0.984016" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
915 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
916 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
917 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
918 <Peptide id="Pep108">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
919 <PeptideSequence>QRNQVQT</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
920 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
921 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
922 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
923 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
924 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
925 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
926 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
927 <Peptide id="Pep109">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
928 <PeptideSequence>YESGQHR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
929 <Modification monoisotopicMassDelta="0.984016" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
930 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
931 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
932 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
933 <Peptide id="Pep110">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
934 <PeptideSequence>DLQYFQR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
935 <Modification monoisotopicMassDelta="0.984016" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
936 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
937 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
938 <Modification monoisotopicMassDelta="0.984016" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
939 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
940 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
941 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
942 <Peptide id="Pep111">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
943 <PeptideSequence>MPCTEDYLSLILN</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
944 <Modification monoisotopicMassDelta="15.9949" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
945 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
946 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
947 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
948 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
949 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
950 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
951 <Peptide id="Pep112">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
952 <PeptideSequence>QQQENPK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
953 <Modification monoisotopicMassDelta="-17.026" location="0">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
954 <cvParam accession="UNIMOD:28" cvRef="UNIMOD" name="Gln-&gt;pyro-Glu"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
955 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
956 <Modification monoisotopicMassDelta="0.984016" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
957 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
958 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
959 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
960 <Peptide id="Pep113">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
961 <PeptideSequence>SNLEEQMK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
962 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
963 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
964 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
965 <Modification monoisotopicMassDelta="15.9949" location="7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
966 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
967 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
968 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
969 <Peptide id="Pep114">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
970 <PeptideSequence>DEMNNAWENLNK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
971 <Modification monoisotopicMassDelta="0.984016" location="11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
972 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
973 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
974 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
975 <Peptide id="Pep115">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
976 <PeptideSequence>QACEGNEWK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
977 <Modification monoisotopicMassDelta="0.984016" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
978 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
979 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
980 <Modification monoisotopicMassDelta="58.00548" location="3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
981 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
982 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
983 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
984 <Peptide id="Pep116">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
985 <PeptideSequence>MTQQQENPKF</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
986 <Modification monoisotopicMassDelta="15.9949" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
987 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
988 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
989 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
990 <Peptide id="Pep117">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
991 <PeptideSequence>FDEYHAQLNK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
992 <Modification monoisotopicMassDelta="0.984016" location="9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
993 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
994 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
995 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
996 <Peptide id="Pep118">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
997 <PeptideSequence>AQLEETISDMN</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
998 <Modification monoisotopicMassDelta="0.984016" location="2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
999 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1000 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1001 <Modification monoisotopicMassDelta="15.9949" location="10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1002 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1003 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1004 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1005 <Peptide id="Pep119">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1006 <PeptideSequence>LIRRQRLRPR</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1007 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1008 <Peptide id="Pep120">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1009 <PeptideSequence>CLFVYCD</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1010 <Modification monoisotopicMassDelta="58.00548" location="1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1011 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1012 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1013 <Modification monoisotopicMassDelta="58.00548" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1014 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1015 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1016 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1017 <Peptide id="Pep121">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1018 <PeptideSequence>EWANNMEDISK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1019 <Modification monoisotopicMassDelta="0.984016" location="5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1020 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1021 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1022 <Modification monoisotopicMassDelta="15.9949" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1023 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1024 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1025 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1026 <Peptide id="Pep122">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1027 <PeptideSequence>EWANNMEDISK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1028 <Modification monoisotopicMassDelta="15.9949" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1029 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1030 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1031 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1032 <Peptide id="Pep123">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1033 <PeptideSequence>EWANNMEDISK</PeptideSequence>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1034 <Modification monoisotopicMassDelta="0.984016" location="4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1035 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1036 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1037 <Modification monoisotopicMassDelta="15.9949" location="6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1038 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1039 </Modification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1040 </Peptide>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1041 <PeptideEvidence isDecoy="false" post="L" pre="K" end="297" start="286" peptide_ref="Pep1" dBSequence_ref="DBSeq43937" id="PepEv_44222_1_286"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1042 <PeptideEvidence isDecoy="false" post="T" pre="K" end="75" start="66" peptide_ref="Pep2" dBSequence_ref="DBSeq43937" id="PepEv_44002_2_66"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1043 <PeptideEvidence isDecoy="false" post="R" pre="K" end="507" start="499" peptide_ref="Pep3" dBSequence_ref="DBSeq43937" id="PepEv_44435_3_499"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1044 <PeptideEvidence isDecoy="false" post="T" pre="K" end="195" start="188" peptide_ref="Pep4" dBSequence_ref="DBSeq31093" id="PepEv_31280_4_188"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1045 <PeptideEvidence isDecoy="false" post="T" pre="K" end="139" start="132" peptide_ref="Pep4" dBSequence_ref="DBSeq31862" id="PepEv_31993_4_132"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1046 <PeptideEvidence isDecoy="false" post="T" pre="K" end="112" start="105" peptide_ref="Pep4" dBSequence_ref="DBSeq32575" id="PepEv_32679_4_105"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1047 <PeptideEvidence isDecoy="false" post="T" pre="K" end="139" start="132" peptide_ref="Pep4" dBSequence_ref="DBSeq47665" id="PepEv_47796_4_132"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1048 <PeptideEvidence isDecoy="false" post="E" pre="R" end="140" start="130" peptide_ref="Pep5" dBSequence_ref="DBSeq46622" id="PepEv_46751_5_130"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1049 <PeptideEvidence isDecoy="false" post="R" pre="R" end="204" start="196" peptide_ref="Pep6" dBSequence_ref="DBSeq31093" id="PepEv_31288_6_196"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1050 <PeptideEvidence isDecoy="false" post="R" pre="R" end="148" start="140" peptide_ref="Pep6" dBSequence_ref="DBSeq31862" id="PepEv_32001_6_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1051 <PeptideEvidence isDecoy="false" post="R" pre="R" end="121" start="113" peptide_ref="Pep6" dBSequence_ref="DBSeq32575" id="PepEv_32687_6_113"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1052 <PeptideEvidence isDecoy="false" post="R" pre="R" end="148" start="140" peptide_ref="Pep6" dBSequence_ref="DBSeq47665" id="PepEv_47804_6_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1053 <PeptideEvidence isDecoy="false" post="R" pre="R" end="204" start="196" peptide_ref="Pep7" dBSequence_ref="DBSeq31093" id="PepEv_31288_7_196"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1054 <PeptideEvidence isDecoy="false" post="R" pre="R" end="148" start="140" peptide_ref="Pep7" dBSequence_ref="DBSeq31862" id="PepEv_32001_7_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1055 <PeptideEvidence isDecoy="false" post="R" pre="R" end="121" start="113" peptide_ref="Pep7" dBSequence_ref="DBSeq32575" id="PepEv_32687_7_113"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1056 <PeptideEvidence isDecoy="false" post="R" pre="R" end="148" start="140" peptide_ref="Pep7" dBSequence_ref="DBSeq47665" id="PepEv_47804_7_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1057 <PeptideEvidence isDecoy="true" post="I" pre="R" end="621" start="607" peptide_ref="Pep8" dBSequence_ref="DBSeq83632" id="PepEv_84238_8_607"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1058 <PeptideEvidence isDecoy="true" post="I" pre="R" end="617" start="603" peptide_ref="Pep8" dBSequence_ref="DBSeq84448" id="PepEv_85050_8_603"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1059 <PeptideEvidence isDecoy="true" post="I" pre="R" end="572" start="558" peptide_ref="Pep8" dBSequence_ref="DBSeq85260" id="PepEv_85817_8_558"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1060 <PeptideEvidence isDecoy="true" post="I" pre="R" end="432" start="418" peptide_ref="Pep8" dBSequence_ref="DBSeq93486" id="PepEv_93903_8_418"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1061 <PeptideEvidence isDecoy="true" post="E" pre="K" end="3336" start="3329" peptide_ref="Pep9" dBSequence_ref="DBSeq65480" id="PepEv_68808_9_3329"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1062 <PeptideEvidence isDecoy="true" post="E" pre="K" end="3266" start="3259" peptide_ref="Pep9" dBSequence_ref="DBSeq73091" id="PepEv_76349_9_3259"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1063 <PeptideEvidence isDecoy="true" post="E" pre="K" end="3266" start="3259" peptide_ref="Pep9" dBSequence_ref="DBSeq94489" id="PepEv_97747_9_3259"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1064 <PeptideEvidence isDecoy="false" post="H" pre="K" end="557" start="548" peptide_ref="Pep10" dBSequence_ref="DBSeq43937" id="PepEv_44484_10_548"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1065 <PeptideEvidence isDecoy="false" post="T" pre="R" end="635" start="627" peptide_ref="Pep11" dBSequence_ref="DBSeq31093" id="PepEv_31719_11_627"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1066 <PeptideEvidence isDecoy="false" post="T" pre="R" end="579" start="571" peptide_ref="Pep11" dBSequence_ref="DBSeq31862" id="PepEv_32432_11_571"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1067 <PeptideEvidence isDecoy="false" post="T" pre="R" end="552" start="544" peptide_ref="Pep11" dBSequence_ref="DBSeq32575" id="PepEv_33118_11_544"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1068 <PeptideEvidence isDecoy="false" post="T" pre="R" end="579" start="571" peptide_ref="Pep11" dBSequence_ref="DBSeq47665" id="PepEv_48235_11_571"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1069 <PeptideEvidence isDecoy="false" post="E" pre="R" end="3946" start="3936" peptide_ref="Pep12" dBSequence_ref="DBSeq9505" id="PepEv_13440_12_3936"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1070 <PeptideEvidence isDecoy="false" post="E" pre="R" end="1904" start="1894" peptide_ref="Pep12" dBSequence_ref="DBSeq17116" id="PepEv_19009_12_1894"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1071 <PeptideEvidence isDecoy="false" post="E" pre="R" end="1828" start="1818" peptide_ref="Pep12" dBSequence_ref="DBSeq38514" id="PepEv_40331_12_1818"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1072 <PeptideEvidence isDecoy="false" post="K" pre="M" end="476" start="469" peptide_ref="Pep13" dBSequence_ref="DBSeq47106" id="PepEv_47574_13_469"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1073 <PeptideEvidence isDecoy="false" post="H" pre="T" end="603" start="592" peptide_ref="Pep14" dBSequence_ref="DBSeq27657" id="PepEv_28248_14_592"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1074 <PeptideEvidence isDecoy="false" post="H" pre="T" end="603" start="592" peptide_ref="Pep14" dBSequence_ref="DBSeq28473" id="PepEv_29064_14_592"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1075 <PeptideEvidence isDecoy="false" post="H" pre="T" end="603" start="592" peptide_ref="Pep14" dBSequence_ref="DBSeq29285" id="PepEv_29876_14_592"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1076 <PeptideEvidence isDecoy="false" post="V" pre="Q" end="1336" start="1330" peptide_ref="Pep15" dBSequence_ref="DBSeq9505" id="PepEv_10834_15_1330"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1077 <PeptideEvidence isDecoy="false" post="V" pre="Q" end="1334" start="1328" peptide_ref="Pep15" dBSequence_ref="DBSeq17116" id="PepEv_18443_15_1328"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1078 <PeptideEvidence isDecoy="false" post="V" pre="Q" end="1258" start="1252" peptide_ref="Pep15" dBSequence_ref="DBSeq38514" id="PepEv_39765_15_1252"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1079 <PeptideEvidence isDecoy="true" post="T" pre="G" end="4076" start="4067" peptide_ref="Pep16" dBSequence_ref="DBSeq65480" id="PepEv_69546_16_4067"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1080 <PeptideEvidence isDecoy="false" post="C" pre="F" end="329" start="318" peptide_ref="Pep17" dBSequence_ref="DBSeq31093" id="PepEv_31410_17_318"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1081 <PeptideEvidence isDecoy="false" post="C" pre="F" end="273" start="262" peptide_ref="Pep17" dBSequence_ref="DBSeq31862" id="PepEv_32123_17_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1082 <PeptideEvidence isDecoy="false" post="C" pre="F" end="246" start="235" peptide_ref="Pep17" dBSequence_ref="DBSeq32575" id="PepEv_32809_17_235"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1083 <PeptideEvidence isDecoy="false" post="C" pre="F" end="273" start="262" peptide_ref="Pep17" dBSequence_ref="DBSeq47665" id="PepEv_47926_17_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1084 <PeptideEvidence isDecoy="false" post="C" pre="F" end="329" start="318" peptide_ref="Pep18" dBSequence_ref="DBSeq31093" id="PepEv_31410_18_318"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1085 <PeptideEvidence isDecoy="false" post="C" pre="F" end="273" start="262" peptide_ref="Pep18" dBSequence_ref="DBSeq31862" id="PepEv_32123_18_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1086 <PeptideEvidence isDecoy="false" post="C" pre="F" end="246" start="235" peptide_ref="Pep18" dBSequence_ref="DBSeq32575" id="PepEv_32809_18_235"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1087 <PeptideEvidence isDecoy="false" post="C" pre="F" end="273" start="262" peptide_ref="Pep18" dBSequence_ref="DBSeq47665" id="PepEv_47926_18_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1088 <PeptideEvidence isDecoy="false" post="N" pre="R" end="92" start="81" peptide_ref="Pep19" dBSequence_ref="DBSeq9350" id="PepEv_9430_19_81"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1089 <PeptideEvidence isDecoy="false" post="N" pre="R" end="90" start="79" peptide_ref="Pep19" dBSequence_ref="DBSeq46469" id="PepEv_46547_19_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1090 <PeptideEvidence isDecoy="false" post="R" pre="R" end="1903" start="1890" peptide_ref="Pep20" dBSequence_ref="DBSeq9505" id="PepEv_11394_20_1890"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1091 <PeptideEvidence isDecoy="false" post="R" pre="R" end="1903" start="1890" peptide_ref="Pep21" dBSequence_ref="DBSeq9505" id="PepEv_11394_21_1890"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1092 <PeptideEvidence isDecoy="false" post="L" pre="K" end="3425" start="3412" peptide_ref="Pep22" dBSequence_ref="DBSeq9505" id="PepEv_12916_22_3412"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1093 <PeptideEvidence isDecoy="false" post="K" pre="L" end="6585" start="6572" peptide_ref="Pep23" dBSequence_ref="DBSeq9505" id="PepEv_16076_23_6572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1094 <PeptideEvidence isDecoy="false" post="K" pre="L" end="4543" start="4530" peptide_ref="Pep23" dBSequence_ref="DBSeq17116" id="PepEv_21645_23_4530"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1095 <PeptideEvidence isDecoy="false" post="K" pre="L" end="4467" start="4454" peptide_ref="Pep23" dBSequence_ref="DBSeq38514" id="PepEv_42967_23_4454"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1096 <PeptideEvidence isDecoy="false" post="L" pre="K" end="3425" start="3412" peptide_ref="Pep24" dBSequence_ref="DBSeq9505" id="PepEv_12916_24_3412"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1097 <PeptideEvidence isDecoy="false" post="Q" pre="K" end="27" start="19" peptide_ref="Pep25" dBSequence_ref="DBSeq46845" id="PepEv_46863_25_19"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1098 <PeptideEvidence isDecoy="true" post="T" pre="-" end="14" start="1" peptide_ref="Pep26" dBSequence_ref="DBSeq60575" id="PepEv_60575_26_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1099 <PeptideEvidence isDecoy="true" post="T" pre="-" end="14" start="1" peptide_ref="Pep26" dBSequence_ref="DBSeq61828" id="PepEv_61828_26_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1100 <PeptideEvidence isDecoy="true" post="T" pre="-" end="14" start="1" peptide_ref="Pep26" dBSequence_ref="DBSeq89848" id="PepEv_89848_26_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1101 <PeptideEvidence isDecoy="false" post="D" pre="L" end="696" start="688" peptide_ref="Pep27" dBSequence_ref="DBSeq31093" id="PepEv_31780_27_688"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1102 <PeptideEvidence isDecoy="false" post="D" pre="L" end="640" start="632" peptide_ref="Pep27" dBSequence_ref="DBSeq31862" id="PepEv_32493_27_632"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1103 <PeptideEvidence isDecoy="false" post="D" pre="L" end="613" start="605" peptide_ref="Pep27" dBSequence_ref="DBSeq32575" id="PepEv_33179_27_605"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1104 <PeptideEvidence isDecoy="false" post="D" pre="L" end="640" start="632" peptide_ref="Pep27" dBSequence_ref="DBSeq47665" id="PepEv_48296_27_632"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1105 <PeptideEvidence isDecoy="true" post="L" pre="K" end="1611" start="1599" peptide_ref="Pep28" dBSequence_ref="DBSeq65480" id="PepEv_67078_28_1599"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1106 <PeptideEvidence isDecoy="true" post="L" pre="K" end="1541" start="1529" peptide_ref="Pep28" dBSequence_ref="DBSeq73091" id="PepEv_74619_28_1529"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1107 <PeptideEvidence isDecoy="true" post="L" pre="K" end="1541" start="1529" peptide_ref="Pep28" dBSequence_ref="DBSeq94489" id="PepEv_96017_28_1529"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1108 <PeptideEvidence isDecoy="false" post="I" pre="V" end="496" start="489" peptide_ref="Pep29" dBSequence_ref="DBSeq47106" id="PepEv_47594_29_489"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1109 <PeptideEvidence isDecoy="false" post="F" pre="K" end="224" start="213" peptide_ref="Pep30" dBSequence_ref="DBSeq46845" id="PepEv_47057_30_213"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1110 <PeptideEvidence isDecoy="true" post="V" pre="L" end="422" start="414" peptide_ref="Pep31" dBSequence_ref="DBSeq104353" id="PepEv_104766_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1111 <PeptideEvidence isDecoy="true" post="V" pre="L" end="422" start="414" peptide_ref="Pep31" dBSequence_ref="DBSeq107227" id="PepEv_107640_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1112 <PeptideEvidence isDecoy="true" post="V" pre="L" end="422" start="414" peptide_ref="Pep31" dBSequence_ref="DBSeq108359" id="PepEv_108772_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1113 <PeptideEvidence isDecoy="true" post="V" pre="L" end="422" start="414" peptide_ref="Pep31" dBSequence_ref="DBSeq109459" id="PepEv_109872_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1114 <PeptideEvidence isDecoy="true" post="F" pre="K" end="315" start="308" peptide_ref="Pep32" dBSequence_ref="DBSeq65480" id="PepEv_65787_32_308"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1115 <PeptideEvidence isDecoy="true" post="F" pre="K" end="249" start="242" peptide_ref="Pep32" dBSequence_ref="DBSeq73091" id="PepEv_73332_32_242"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1116 <PeptideEvidence isDecoy="true" post="F" pre="K" end="249" start="242" peptide_ref="Pep32" dBSequence_ref="DBSeq94489" id="PepEv_94730_32_242"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1117 <PeptideEvidence isDecoy="false" post="F" pre="K" end="85" start="79" peptide_ref="Pep33" dBSequence_ref="DBSeq7051" id="PepEv_7129_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1118 <PeptideEvidence isDecoy="false" post="F" pre="K" end="85" start="79" peptide_ref="Pep33" dBSequence_ref="DBSeq7906" id="PepEv_7984_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1119 <PeptideEvidence isDecoy="false" post="F" pre="K" end="85" start="79" peptide_ref="Pep33" dBSequence_ref="DBSeq35173" id="PepEv_35251_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1120 <PeptideEvidence isDecoy="false" post="F" pre="K" end="85" start="79" peptide_ref="Pep33" dBSequence_ref="DBSeq36028" id="PepEv_36106_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1121 <PeptideEvidence isDecoy="true" post="Q" pre="K" end="38" start="33" peptide_ref="Pep34" dBSequence_ref="DBSeq64736" id="PepEv_64768_34_33"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1122 <PeptideEvidence isDecoy="true" post="T" pre="T" end="3395" start="3382" peptide_ref="Pep35" dBSequence_ref="DBSeq65480" id="PepEv_68861_35_3382"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1123 <PeptideEvidence isDecoy="true" post="T" pre="T" end="3325" start="3312" peptide_ref="Pep35" dBSequence_ref="DBSeq73091" id="PepEv_76402_35_3312"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1124 <PeptideEvidence isDecoy="true" post="T" pre="T" end="3325" start="3312" peptide_ref="Pep35" dBSequence_ref="DBSeq94489" id="PepEv_97800_35_3312"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1125 <PeptideEvidence isDecoy="false" post="I" pre="G" end="511" start="504" peptide_ref="Pep36" dBSequence_ref="DBSeq31093" id="PepEv_31596_36_504"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1126 <PeptideEvidence isDecoy="false" post="I" pre="G" end="455" start="448" peptide_ref="Pep36" dBSequence_ref="DBSeq31862" id="PepEv_32309_36_448"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1127 <PeptideEvidence isDecoy="false" post="I" pre="G" end="428" start="421" peptide_ref="Pep36" dBSequence_ref="DBSeq32575" id="PepEv_32995_36_421"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1128 <PeptideEvidence isDecoy="false" post="I" pre="G" end="455" start="448" peptide_ref="Pep36" dBSequence_ref="DBSeq47665" id="PepEv_48112_36_448"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1129 <PeptideEvidence isDecoy="true" post="V" pre="L" end="279" start="268" peptide_ref="Pep37" dBSequence_ref="DBSeq65480" id="PepEv_65747_37_268"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1130 <PeptideEvidence isDecoy="true" post="V" pre="L" end="219" start="208" peptide_ref="Pep37" dBSequence_ref="DBSeq73091" id="PepEv_73298_37_208"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1131 <PeptideEvidence isDecoy="true" post="V" pre="L" end="219" start="208" peptide_ref="Pep37" dBSequence_ref="DBSeq94489" id="PepEv_94696_37_208"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1132 <PeptideEvidence isDecoy="false" post="A" pre="E" end="3551" start="3542" peptide_ref="Pep38" dBSequence_ref="DBSeq9505" id="PepEv_13046_38_3542"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1133 <PeptideEvidence isDecoy="false" post="T" pre="K" end="114" start="101" peptide_ref="Pep39" dBSequence_ref="DBSeq7051" id="PepEv_7151_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1134 <PeptideEvidence isDecoy="false" post="T" pre="K" end="114" start="101" peptide_ref="Pep39" dBSequence_ref="DBSeq7906" id="PepEv_8006_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1135 <PeptideEvidence isDecoy="false" post="T" pre="K" end="114" start="101" peptide_ref="Pep39" dBSequence_ref="DBSeq35173" id="PepEv_35273_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1136 <PeptideEvidence isDecoy="false" post="T" pre="K" end="114" start="101" peptide_ref="Pep39" dBSequence_ref="DBSeq36028" id="PepEv_36128_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1137 <PeptideEvidence isDecoy="true" post="P" pre="D" end="552" start="544" peptide_ref="Pep40" dBSequence_ref="DBSeq83632" id="PepEv_84175_40_544"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1138 <PeptideEvidence isDecoy="true" post="P" pre="D" end="548" start="540" peptide_ref="Pep40" dBSequence_ref="DBSeq84448" id="PepEv_84987_40_540"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1139 <PeptideEvidence isDecoy="true" post="P" pre="D" end="503" start="495" peptide_ref="Pep40" dBSequence_ref="DBSeq85260" id="PepEv_85754_40_495"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1140 <PeptideEvidence isDecoy="true" post="P" pre="D" end="363" start="355" peptide_ref="Pep40" dBSequence_ref="DBSeq93486" id="PepEv_93840_40_355"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1141 <PeptideEvidence isDecoy="false" post="L" pre="T" end="2686" start="2678" peptide_ref="Pep41" dBSequence_ref="DBSeq9505" id="PepEv_12182_41_2678"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1142 <PeptideEvidence isDecoy="true" post="I" pre="E" end="196" start="186" peptide_ref="Pep42" dBSequence_ref="DBSeq99912" id="PepEv_100097_42_186"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1143 <PeptideEvidence isDecoy="true" post="L" pre="R" end="101" start="95" peptide_ref="Pep43" dBSequence_ref="DBSeq102597" id="PepEv_102691_43_95"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1144 <PeptideEvidence isDecoy="true" post="E" pre="K" end="6240" start="6232" peptide_ref="Pep44" dBSequence_ref="DBSeq65480" id="PepEv_71711_44_6232"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1145 <PeptideEvidence isDecoy="true" post="E" pre="K" end="4130" start="4122" peptide_ref="Pep44" dBSequence_ref="DBSeq73091" id="PepEv_77212_44_4122"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1146 <PeptideEvidence isDecoy="true" post="E" pre="K" end="4130" start="4122" peptide_ref="Pep44" dBSequence_ref="DBSeq94489" id="PepEv_98610_44_4122"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1147 <PeptideEvidence isDecoy="false" post="A" pre="K" end="1436" start="1427" peptide_ref="Pep45" dBSequence_ref="DBSeq9505" id="PepEv_10931_45_1427"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1148 <PeptideEvidence isDecoy="false" post="A" pre="K" end="1434" start="1425" peptide_ref="Pep45" dBSequence_ref="DBSeq17116" id="PepEv_18540_45_1425"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1149 <PeptideEvidence isDecoy="false" post="A" pre="K" end="1358" start="1349" peptide_ref="Pep45" dBSequence_ref="DBSeq38514" id="PepEv_39862_45_1349"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1150 <PeptideEvidence isDecoy="false" post="S" pre="S" end="88" start="79" peptide_ref="Pep46" dBSequence_ref="DBSeq9505" id="PepEv_9583_46_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1151 <PeptideEvidence isDecoy="false" post="S" pre="S" end="88" start="79" peptide_ref="Pep46" dBSequence_ref="DBSeq17116" id="PepEv_17194_46_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1152 <PeptideEvidence isDecoy="false" post="S" pre="S" end="12" start="3" peptide_ref="Pep46" dBSequence_ref="DBSeq38514" id="PepEv_38516_46_3"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1153 <PeptideEvidence isDecoy="true" post="A" pre="V" end="2003" start="1995" peptide_ref="Pep47" dBSequence_ref="DBSeq65480" id="PepEv_67474_47_1995"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1154 <PeptideEvidence isDecoy="true" post="A" pre="V" end="1933" start="1925" peptide_ref="Pep47" dBSequence_ref="DBSeq73091" id="PepEv_75015_47_1925"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1155 <PeptideEvidence isDecoy="true" post="A" pre="V" end="1933" start="1925" peptide_ref="Pep47" dBSequence_ref="DBSeq94489" id="PepEv_96413_47_1925"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1156 <PeptideEvidence isDecoy="true" post="H" pre="R" end="1734" start="1725" peptide_ref="Pep48" dBSequence_ref="DBSeq65480" id="PepEv_67204_48_1725"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1157 <PeptideEvidence isDecoy="true" post="H" pre="R" end="1664" start="1655" peptide_ref="Pep48" dBSequence_ref="DBSeq73091" id="PepEv_74745_48_1655"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1158 <PeptideEvidence isDecoy="true" post="H" pre="R" end="1664" start="1655" peptide_ref="Pep48" dBSequence_ref="DBSeq94489" id="PepEv_96143_48_1655"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1159 <PeptideEvidence isDecoy="false" post="E" pre="K" end="3230" start="3221" peptide_ref="Pep49" dBSequence_ref="DBSeq9505" id="PepEv_12725_49_3221"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1160 <PeptideEvidence isDecoy="false" post="H" pre="K" end="1145" start="1136" peptide_ref="Pep50" dBSequence_ref="DBSeq4600" id="PepEv_5735_50_1136"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1161 <PeptideEvidence isDecoy="false" post="H" pre="K" end="1090" start="1081" peptide_ref="Pep50" dBSequence_ref="DBSeq5853" id="PepEv_6933_50_1081"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1162 <PeptideEvidence isDecoy="false" post="H" pre="K" end="1192" start="1183" peptide_ref="Pep50" dBSequence_ref="DBSeq33873" id="PepEv_35055_50_1183"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1163 <PeptideEvidence isDecoy="true" post="R" pre="K" end="4345" start="4338" peptide_ref="Pep51" dBSequence_ref="DBSeq65480" id="PepEv_69817_51_4338"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1164 <PeptideEvidence isDecoy="false" post="Q" pre="K" end="2858" start="2849" peptide_ref="Pep52" dBSequence_ref="DBSeq9505" id="PepEv_12353_52_2849"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1165 <PeptideEvidence isDecoy="true" post="P" pre="K" end="6672" start="6666" peptide_ref="Pep53" dBSequence_ref="DBSeq65480" id="PepEv_72145_53_6666"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1166 <PeptideEvidence isDecoy="true" post="P" pre="K" end="4562" start="4556" peptide_ref="Pep53" dBSequence_ref="DBSeq73091" id="PepEv_77646_53_4556"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1167 <PeptideEvidence isDecoy="true" post="P" pre="K" end="4562" start="4556" peptide_ref="Pep53" dBSequence_ref="DBSeq94489" id="PepEv_99044_53_4556"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1168 <PeptideEvidence isDecoy="false" post="L" pre="Q" end="4275" start="4266" peptide_ref="Pep54" dBSequence_ref="DBSeq9505" id="PepEv_13770_54_4266"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1169 <PeptideEvidence isDecoy="false" post="L" pre="Q" end="2233" start="2224" peptide_ref="Pep54" dBSequence_ref="DBSeq17116" id="PepEv_19339_54_2224"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1170 <PeptideEvidence isDecoy="false" post="L" pre="Q" end="2157" start="2148" peptide_ref="Pep54" dBSequence_ref="DBSeq38514" id="PepEv_40661_54_2148"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1171 <PeptideEvidence isDecoy="false" post="Y" pre="K" end="1039" start="1030" peptide_ref="Pep55" dBSequence_ref="DBSeq4600" id="PepEv_5629_55_1030"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1172 <PeptideEvidence isDecoy="false" post="Y" pre="K" end="984" start="975" peptide_ref="Pep55" dBSequence_ref="DBSeq5853" id="PepEv_6827_55_975"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1173 <PeptideEvidence isDecoy="false" post="Y" pre="K" end="1086" start="1077" peptide_ref="Pep55" dBSequence_ref="DBSeq33873" id="PepEv_34949_55_1077"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1174 <PeptideEvidence isDecoy="false" post="L" pre="K" end="743" start="737" peptide_ref="Pep56" dBSequence_ref="DBSeq9505" id="PepEv_10241_56_737"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1175 <PeptideEvidence isDecoy="false" post="L" pre="K" end="743" start="737" peptide_ref="Pep56" dBSequence_ref="DBSeq17116" id="PepEv_17852_56_737"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1176 <PeptideEvidence isDecoy="false" post="L" pre="K" end="667" start="661" peptide_ref="Pep56" dBSequence_ref="DBSeq38514" id="PepEv_39174_56_661"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1177 <PeptideEvidence isDecoy="true" post="Y" pre="K" end="6175" start="6168" peptide_ref="Pep57" dBSequence_ref="DBSeq65480" id="PepEv_71647_57_6168"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1178 <PeptideEvidence isDecoy="true" post="Y" pre="K" end="4065" start="4058" peptide_ref="Pep57" dBSequence_ref="DBSeq73091" id="PepEv_77148_57_4058"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1179 <PeptideEvidence isDecoy="true" post="Y" pre="K" end="4065" start="4058" peptide_ref="Pep57" dBSequence_ref="DBSeq94489" id="PepEv_98546_57_4058"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1180 <PeptideEvidence isDecoy="false" post="K" pre="R" end="557" start="550" peptide_ref="Pep58" dBSequence_ref="DBSeq8761" id="PepEv_9310_58_550"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1181 <PeptideEvidence isDecoy="true" post="S" pre="W" end="189" start="177" peptide_ref="Pep59" dBSequence_ref="DBSeq92858" id="PepEv_93034_59_177"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1182 <PeptideEvidence isDecoy="false" post="C" pre="K" end="98" start="89" peptide_ref="Pep60" dBSequence_ref="DBSeq23875" id="PepEv_23963_60_89"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1183 <PeptideEvidence isDecoy="false" post="C" pre="K" end="98" start="89" peptide_ref="Pep60" dBSequence_ref="DBSeq46340" id="PepEv_46428_60_89"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1184 <PeptideEvidence isDecoy="false" post="E" pre="L" end="913" start="904" peptide_ref="Pep61" dBSequence_ref="DBSeq9505" id="PepEv_10408_61_904"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1185 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq56223" id="PepEv_56260_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1186 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq56840" id="PepEv_56877_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1187 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq57457" id="PepEv_57494_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1188 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq58074" id="PepEv_58111_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1189 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq58690" id="PepEv_58727_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1190 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq59287" id="PepEv_59324_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1191 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq79979" id="PepEv_80016_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1192 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq80596" id="PepEv_80633_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1193 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq81213" id="PepEv_81250_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1194 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq81830" id="PepEv_81867_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1195 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq82446" id="PepEv_82483_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1196 <PeptideEvidence isDecoy="true" post="A" pre="K" end="48" start="38" peptide_ref="Pep62" dBSequence_ref="DBSeq83043" id="PepEv_83080_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1197 <PeptideEvidence isDecoy="true" post="L" pre="P" end="4738" start="4729" peptide_ref="Pep63" dBSequence_ref="DBSeq65480" id="PepEv_70208_63_4729"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1198 <PeptideEvidence isDecoy="false" post="E" pre="R" end="191" start="179" peptide_ref="Pep64" dBSequence_ref="DBSeq27657" id="PepEv_27835_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1199 <PeptideEvidence isDecoy="false" post="E" pre="R" end="191" start="179" peptide_ref="Pep64" dBSequence_ref="DBSeq28473" id="PepEv_28651_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1200 <PeptideEvidence isDecoy="false" post="E" pre="R" end="191" start="179" peptide_ref="Pep64" dBSequence_ref="DBSeq29285" id="PepEv_29463_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1201 <PeptideEvidence isDecoy="false" post="E" pre="R" end="191" start="179" peptide_ref="Pep64" dBSequence_ref="DBSeq37511" id="PepEv_37689_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1202 <PeptideEvidence isDecoy="false" post="G" pre="K" end="338" start="329" peptide_ref="Pep65" dBSequence_ref="DBSeq49478" id="PepEv_49806_65_329"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1203 <PeptideEvidence isDecoy="false" post="V" pre="D" end="398" start="390" peptide_ref="Pep66" dBSequence_ref="DBSeq9505" id="PepEv_9894_66_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1204 <PeptideEvidence isDecoy="false" post="V" pre="D" end="398" start="390" peptide_ref="Pep66" dBSequence_ref="DBSeq17116" id="PepEv_17505_66_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1205 <PeptideEvidence isDecoy="false" post="V" pre="D" end="322" start="314" peptide_ref="Pep66" dBSequence_ref="DBSeq38514" id="PepEv_38827_66_314"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1206 <PeptideEvidence isDecoy="false" post="V" pre="D" end="398" start="390" peptide_ref="Pep67" dBSequence_ref="DBSeq9505" id="PepEv_9894_67_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1207 <PeptideEvidence isDecoy="false" post="V" pre="D" end="398" start="390" peptide_ref="Pep67" dBSequence_ref="DBSeq17116" id="PepEv_17505_67_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1208 <PeptideEvidence isDecoy="false" post="V" pre="D" end="322" start="314" peptide_ref="Pep67" dBSequence_ref="DBSeq38514" id="PepEv_38827_67_314"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1209 <PeptideEvidence isDecoy="true" post="R" pre="K" end="166" start="153" peptide_ref="Pep68" dBSequence_ref="DBSeq104353" id="PepEv_104505_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1210 <PeptideEvidence isDecoy="true" post="R" pre="K" end="166" start="153" peptide_ref="Pep68" dBSequence_ref="DBSeq107227" id="PepEv_107379_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1211 <PeptideEvidence isDecoy="true" post="R" pre="K" end="166" start="153" peptide_ref="Pep68" dBSequence_ref="DBSeq108359" id="PepEv_108511_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1212 <PeptideEvidence isDecoy="true" post="R" pre="K" end="166" start="153" peptide_ref="Pep68" dBSequence_ref="DBSeq109459" id="PepEv_109611_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1213 <PeptideEvidence isDecoy="false" post="S" pre="K" end="3274" start="3267" peptide_ref="Pep69" dBSequence_ref="DBSeq9505" id="PepEv_12771_69_3267"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1214 <PeptideEvidence isDecoy="false" post="I" pre="K" end="5697" start="5688" peptide_ref="Pep70" dBSequence_ref="DBSeq9505" id="PepEv_15192_70_5688"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1215 <PeptideEvidence isDecoy="false" post="I" pre="K" end="3655" start="3646" peptide_ref="Pep70" dBSequence_ref="DBSeq17116" id="PepEv_20761_70_3646"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1216 <PeptideEvidence isDecoy="false" post="I" pre="K" end="3579" start="3570" peptide_ref="Pep70" dBSequence_ref="DBSeq38514" id="PepEv_42083_70_3570"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1217 <PeptideEvidence isDecoy="true" post="N" pre="D" end="425" start="413" peptide_ref="Pep71" dBSequence_ref="DBSeq99912" id="PepEv_100324_71_413"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1218 <PeptideEvidence isDecoy="true" post="H" pre="K" end="1083" start="1077" peptide_ref="Pep72" dBSequence_ref="DBSeq65480" id="PepEv_66556_72_1077"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1219 <PeptideEvidence isDecoy="true" post="H" pre="K" end="1013" start="1007" peptide_ref="Pep72" dBSequence_ref="DBSeq73091" id="PepEv_74097_72_1007"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1220 <PeptideEvidence isDecoy="true" post="H" pre="K" end="1013" start="1007" peptide_ref="Pep72" dBSequence_ref="DBSeq94489" id="PepEv_95495_72_1007"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1221 <PeptideEvidence isDecoy="false" post="V" pre="K" end="1013" start="1006" peptide_ref="Pep73" dBSequence_ref="DBSeq9505" id="PepEv_10510_73_1006"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1222 <PeptideEvidence isDecoy="false" post="V" pre="K" end="1011" start="1004" peptide_ref="Pep73" dBSequence_ref="DBSeq17116" id="PepEv_18119_73_1004"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1223 <PeptideEvidence isDecoy="false" post="V" pre="K" end="935" start="928" peptide_ref="Pep73" dBSequence_ref="DBSeq38514" id="PepEv_39441_73_928"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1224 <PeptideEvidence isDecoy="false" post="Y" pre="V" end="7304" start="7298" peptide_ref="Pep74" dBSequence_ref="DBSeq9505" id="PepEv_16802_74_7298"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1225 <PeptideEvidence isDecoy="false" post="Y" pre="V" end="5258" start="5252" peptide_ref="Pep74" dBSequence_ref="DBSeq17116" id="PepEv_22367_74_5252"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1226 <PeptideEvidence isDecoy="false" post="Y" pre="V" end="5182" start="5176" peptide_ref="Pep74" dBSequence_ref="DBSeq38514" id="PepEv_43689_74_5176"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1227 <PeptideEvidence isDecoy="false" post="L" pre="K" end="146" start="134" peptide_ref="Pep75" dBSequence_ref="DBSeq27657" id="PepEv_27790_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1228 <PeptideEvidence isDecoy="false" post="L" pre="K" end="146" start="134" peptide_ref="Pep75" dBSequence_ref="DBSeq28473" id="PepEv_28606_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1229 <PeptideEvidence isDecoy="false" post="L" pre="K" end="146" start="134" peptide_ref="Pep75" dBSequence_ref="DBSeq29285" id="PepEv_29418_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1230 <PeptideEvidence isDecoy="false" post="L" pre="K" end="146" start="134" peptide_ref="Pep75" dBSequence_ref="DBSeq37511" id="PepEv_37644_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1231 <PeptideEvidence isDecoy="true" post="A" pre="K" end="578" start="572" peptide_ref="Pep76" dBSequence_ref="DBSeq104353" id="PepEv_104924_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1232 <PeptideEvidence isDecoy="true" post="A" pre="K" end="578" start="572" peptide_ref="Pep76" dBSequence_ref="DBSeq107227" id="PepEv_107798_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1233 <PeptideEvidence isDecoy="true" post="A" pre="K" end="578" start="572" peptide_ref="Pep76" dBSequence_ref="DBSeq108359" id="PepEv_108930_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1234 <PeptideEvidence isDecoy="true" post="A" pre="K" end="578" start="572" peptide_ref="Pep76" dBSequence_ref="DBSeq109459" id="PepEv_110030_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1235 <PeptideEvidence isDecoy="false" post="P" pre="N" end="681" start="667" peptide_ref="Pep77" dBSequence_ref="DBSeq48378" id="PepEv_49044_77_667"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1236 <PeptideEvidence isDecoy="false" post="P" pre="N" end="713" start="699" peptide_ref="Pep77" dBSequence_ref="DBSeq51252" id="PepEv_51950_77_699"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1237 <PeptideEvidence isDecoy="false" post="P" pre="N" end="681" start="667" peptide_ref="Pep77" dBSequence_ref="DBSeq52384" id="PepEv_53050_77_667"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1238 <PeptideEvidence isDecoy="false" post="P" pre="N" end="681" start="667" peptide_ref="Pep77" dBSequence_ref="DBSeq53484" id="PepEv_54150_77_667"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1239 <PeptideEvidence isDecoy="false" post="Q" pre="Q" end="5976" start="5971" peptide_ref="Pep78" dBSequence_ref="DBSeq9505" id="PepEv_15475_78_5971"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1240 <PeptideEvidence isDecoy="false" post="Q" pre="Q" end="3934" start="3929" peptide_ref="Pep78" dBSequence_ref="DBSeq17116" id="PepEv_21044_78_3929"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1241 <PeptideEvidence isDecoy="false" post="Q" pre="Q" end="3858" start="3853" peptide_ref="Pep78" dBSequence_ref="DBSeq38514" id="PepEv_42366_78_3853"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1242 <PeptideEvidence isDecoy="false" post="R" pre="R" end="1143" start="1138" peptide_ref="Pep79" dBSequence_ref="DBSeq9505" id="PepEv_10642_79_1138"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1243 <PeptideEvidence isDecoy="false" post="R" pre="R" end="1141" start="1136" peptide_ref="Pep79" dBSequence_ref="DBSeq17116" id="PepEv_18251_79_1136"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1244 <PeptideEvidence isDecoy="false" post="R" pre="R" end="1065" start="1060" peptide_ref="Pep79" dBSequence_ref="DBSeq38514" id="PepEv_39573_79_1060"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1245 <PeptideEvidence isDecoy="false" post="A" pre="R" end="952" start="940" peptide_ref="Pep80" dBSequence_ref="DBSeq9505" id="PepEv_10444_80_940"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1246 <PeptideEvidence isDecoy="false" post="A" pre="R" end="950" start="938" peptide_ref="Pep80" dBSequence_ref="DBSeq17116" id="PepEv_18053_80_938"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1247 <PeptideEvidence isDecoy="false" post="A" pre="R" end="874" start="862" peptide_ref="Pep80" dBSequence_ref="DBSeq38514" id="PepEv_39375_80_862"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1248 <PeptideEvidence isDecoy="false" post="F" pre="E" end="1012" start="1001" peptide_ref="Pep81" dBSequence_ref="DBSeq4600" id="PepEv_5600_81_1001"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1249 <PeptideEvidence isDecoy="false" post="F" pre="E" end="957" start="946" peptide_ref="Pep81" dBSequence_ref="DBSeq5853" id="PepEv_6798_81_946"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1250 <PeptideEvidence isDecoy="false" post="F" pre="E" end="1059" start="1048" peptide_ref="Pep81" dBSequence_ref="DBSeq33873" id="PepEv_34920_81_1048"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1251 <PeptideEvidence isDecoy="false" post="S" pre="Q" end="4283" start="4278" peptide_ref="Pep82" dBSequence_ref="DBSeq9505" id="PepEv_13782_82_4278"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1252 <PeptideEvidence isDecoy="false" post="S" pre="Q" end="2241" start="2236" peptide_ref="Pep82" dBSequence_ref="DBSeq17116" id="PepEv_19351_82_2236"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1253 <PeptideEvidence isDecoy="false" post="S" pre="Q" end="2165" start="2160" peptide_ref="Pep82" dBSequence_ref="DBSeq38514" id="PepEv_40673_82_2160"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1254 <PeptideEvidence isDecoy="false" post="E" pre="C" end="28" start="16" peptide_ref="Pep83" dBSequence_ref="DBSeq49478" id="PepEv_49493_83_16"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1255 <PeptideEvidence isDecoy="false" post="K" pre="R" end="780" start="774" peptide_ref="Pep84" dBSequence_ref="DBSeq27657" id="PepEv_28430_84_774"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1256 <PeptideEvidence isDecoy="true" post="S" pre="R" end="43" start="37" peptide_ref="Pep85" dBSequence_ref="DBSeq83632" id="PepEv_83668_85_37"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1257 <PeptideEvidence isDecoy="false" post="L" pre="K" end="47" start="35" peptide_ref="Pep86" dBSequence_ref="DBSeq49478" id="PepEv_49512_86_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1258 <PeptideEvidence isDecoy="false" post="L" pre="K" end="47" start="35" peptide_ref="Pep86" dBSequence_ref="DBSeq54584" id="PepEv_54618_86_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1259 <PeptideEvidence isDecoy="false" post="L" pre="K" end="47" start="35" peptide_ref="Pep86" dBSequence_ref="DBSeq55599" id="PepEv_55633_86_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1260 <PeptideEvidence isDecoy="false" post="L" pre="K" end="47" start="35" peptide_ref="Pep87" dBSequence_ref="DBSeq49478" id="PepEv_49512_87_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1261 <PeptideEvidence isDecoy="false" post="L" pre="K" end="47" start="35" peptide_ref="Pep87" dBSequence_ref="DBSeq54584" id="PepEv_54618_87_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1262 <PeptideEvidence isDecoy="false" post="L" pre="K" end="47" start="35" peptide_ref="Pep87" dBSequence_ref="DBSeq55599" id="PepEv_55633_87_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1263 <PeptideEvidence isDecoy="false" post="D" pre="K" end="705" start="694" peptide_ref="Pep88" dBSequence_ref="DBSeq49855" id="PepEv_50548_88_694"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1264 <PeptideEvidence isDecoy="false" post="D" pre="K" end="662" start="651" peptide_ref="Pep88" dBSequence_ref="DBSeq50575" id="PepEv_51225_88_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1265 <PeptideEvidence isDecoy="false" post="D" pre="K" end="662" start="651" peptide_ref="Pep88" dBSequence_ref="DBSeq54922" id="PepEv_55572_88_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1266 <PeptideEvidence isDecoy="false" post="D" pre="K" end="705" start="694" peptide_ref="Pep89" dBSequence_ref="DBSeq49855" id="PepEv_50548_89_694"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1267 <PeptideEvidence isDecoy="false" post="D" pre="K" end="662" start="651" peptide_ref="Pep89" dBSequence_ref="DBSeq50575" id="PepEv_51225_89_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1268 <PeptideEvidence isDecoy="false" post="D" pre="K" end="662" start="651" peptide_ref="Pep89" dBSequence_ref="DBSeq54922" id="PepEv_55572_89_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1269 <PeptideEvidence isDecoy="true" post="S" pre="R" end="5477" start="5465" peptide_ref="Pep90" dBSequence_ref="DBSeq65480" id="PepEv_70944_90_5465"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1270 <PeptideEvidence isDecoy="false" post="R" pre="R" end="7293" start="7285" peptide_ref="Pep91" dBSequence_ref="DBSeq9505" id="PepEv_16789_91_7285"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1271 <PeptideEvidence isDecoy="false" post="R" pre="R" end="5247" start="5239" peptide_ref="Pep91" dBSequence_ref="DBSeq17116" id="PepEv_22354_91_5239"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1272 <PeptideEvidence isDecoy="false" post="R" pre="R" end="5171" start="5163" peptide_ref="Pep91" dBSequence_ref="DBSeq38514" id="PepEv_43676_91_5163"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1273 <PeptideEvidence isDecoy="false" post="E" pre="R" end="60" start="51" peptide_ref="Pep92" dBSequence_ref="DBSeq47106" id="PepEv_47156_92_51"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1274 <PeptideEvidence isDecoy="false" post="Q" pre="K" end="3866" start="3857" peptide_ref="Pep93" dBSequence_ref="DBSeq9505" id="PepEv_13361_93_3857"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1275 <PeptideEvidence isDecoy="false" post="Q" pre="K" end="1824" start="1815" peptide_ref="Pep93" dBSequence_ref="DBSeq17116" id="PepEv_18930_93_1815"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1276 <PeptideEvidence isDecoy="false" post="Q" pre="K" end="1748" start="1739" peptide_ref="Pep93" dBSequence_ref="DBSeq38514" id="PepEv_40252_93_1739"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1277 <PeptideEvidence isDecoy="false" post="A" pre="K" end="818" start="809" peptide_ref="Pep94" dBSequence_ref="DBSeq9505" id="PepEv_10313_94_809"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1278 <PeptideEvidence isDecoy="false" post="A" pre="K" end="818" start="809" peptide_ref="Pep94" dBSequence_ref="DBSeq17116" id="PepEv_17924_94_809"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1279 <PeptideEvidence isDecoy="false" post="A" pre="K" end="742" start="733" peptide_ref="Pep94" dBSequence_ref="DBSeq38514" id="PepEv_39246_94_733"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1280 <PeptideEvidence isDecoy="false" post="K" pre="K" end="734" start="727" peptide_ref="Pep95" dBSequence_ref="DBSeq48378" id="PepEv_49104_95_727"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1281 <PeptideEvidence isDecoy="false" post="K" pre="K" end="766" start="759" peptide_ref="Pep95" dBSequence_ref="DBSeq51252" id="PepEv_52010_95_759"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1282 <PeptideEvidence isDecoy="false" post="K" pre="K" end="734" start="727" peptide_ref="Pep95" dBSequence_ref="DBSeq52384" id="PepEv_53110_95_727"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1283 <PeptideEvidence isDecoy="false" post="K" pre="K" end="734" start="727" peptide_ref="Pep95" dBSequence_ref="DBSeq53484" id="PepEv_54210_95_727"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1284 <PeptideEvidence isDecoy="true" post="L" pre="R" end="434" start="424" peptide_ref="Pep96" dBSequence_ref="DBSeq65480" id="PepEv_65903_96_424"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1285 <PeptideEvidence isDecoy="true" post="L" pre="R" end="368" start="358" peptide_ref="Pep96" dBSequence_ref="DBSeq73091" id="PepEv_73448_96_358"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1286 <PeptideEvidence isDecoy="true" post="L" pre="R" end="368" start="358" peptide_ref="Pep96" dBSequence_ref="DBSeq94489" id="PepEv_94846_96_358"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1287 <PeptideEvidence isDecoy="true" post="A" pre="K" end="42" start="32" peptide_ref="Pep97" dBSequence_ref="DBSeq79850" id="PepEv_79881_97_32"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1288 <PeptideEvidence isDecoy="true" post="A" pre="K" end="42" start="32" peptide_ref="Pep97" dBSequence_ref="DBSeq102315" id="PepEv_102346_97_32"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1289 <PeptideEvidence isDecoy="false" post="K" pre="K" end="43" start="37" peptide_ref="Pep98" dBSequence_ref="DBSeq43937" id="PepEv_43973_98_37"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1290 <PeptideEvidence isDecoy="false" post="Q" pre="-" end="8" start="1" peptide_ref="Pep99" dBSequence_ref="DBSeq9505" id="PepEv_9505_99_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1291 <PeptideEvidence isDecoy="false" post="Q" pre="-" end="8" start="1" peptide_ref="Pep99" dBSequence_ref="DBSeq17116" id="PepEv_17116_99_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1292 <PeptideEvidence isDecoy="false" post="I" pre="K" end="6139" start="6130" peptide_ref="Pep100" dBSequence_ref="DBSeq9505" id="PepEv_15634_100_6130"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1293 <PeptideEvidence isDecoy="false" post="I" pre="K" end="4097" start="4088" peptide_ref="Pep100" dBSequence_ref="DBSeq17116" id="PepEv_21203_100_4088"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1294 <PeptideEvidence isDecoy="false" post="I" pre="K" end="4021" start="4012" peptide_ref="Pep100" dBSequence_ref="DBSeq38514" id="PepEv_42525_100_4012"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1295 <PeptideEvidence isDecoy="false" post="L" pre="K" end="284" start="276" peptide_ref="Pep101" dBSequence_ref="DBSeq8761" id="PepEv_9036_101_276"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1296 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq56223" id="PepEv_56364_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1297 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq56840" id="PepEv_56981_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1298 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq57457" id="PepEv_57598_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1299 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq58074" id="PepEv_58215_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1300 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq58690" id="PepEv_58831_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1301 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq59287" id="PepEv_59428_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1302 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq79979" id="PepEv_80120_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1303 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq80596" id="PepEv_80737_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1304 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq81213" id="PepEv_81354_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1305 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq81830" id="PepEv_81971_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1306 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq82446" id="PepEv_82587_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1307 <PeptideEvidence isDecoy="true" post="E" pre="G" end="149" start="142" peptide_ref="Pep102" dBSequence_ref="DBSeq83043" id="PepEv_83184_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1308 <PeptideEvidence isDecoy="true" post="Q" pre="P" end="600" start="591" peptide_ref="Pep103" dBSequence_ref="DBSeq63026" id="PepEv_63616_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1309 <PeptideEvidence isDecoy="true" post="Q" pre="P" end="600" start="591" peptide_ref="Pep103" dBSequence_ref="DBSeq63881" id="PepEv_64471_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1310 <PeptideEvidence isDecoy="true" post="Q" pre="P" end="600" start="591" peptide_ref="Pep103" dBSequence_ref="DBSeq91148" id="PepEv_91738_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1311 <PeptideEvidence isDecoy="true" post="Q" pre="P" end="600" start="591" peptide_ref="Pep103" dBSequence_ref="DBSeq92003" id="PepEv_92593_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1312 <PeptideEvidence isDecoy="true" post="I" pre="G" end="196" start="184" peptide_ref="Pep104" dBSequence_ref="DBSeq99912" id="PepEv_100095_104_184"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1313 <PeptideEvidence isDecoy="true" post="D" pre="H" end="754" start="746" peptide_ref="Pep105" dBSequence_ref="DBSeq83632" id="PepEv_84377_105_746"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1314 <PeptideEvidence isDecoy="true" post="D" pre="H" end="750" start="742" peptide_ref="Pep105" dBSequence_ref="DBSeq84448" id="PepEv_85189_105_742"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1315 <PeptideEvidence isDecoy="true" post="D" pre="H" end="705" start="697" peptide_ref="Pep105" dBSequence_ref="DBSeq85260" id="PepEv_85956_105_697"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1316 <PeptideEvidence isDecoy="true" post="D" pre="H" end="565" start="557" peptide_ref="Pep105" dBSequence_ref="DBSeq93486" id="PepEv_94042_105_557"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1317 <PeptideEvidence isDecoy="false" post="N" pre="Y" end="439" start="432" peptide_ref="Pep106" dBSequence_ref="DBSeq36883" id="PepEv_37314_106_432"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1318 <PeptideEvidence isDecoy="false" post="M" pre="K" end="1213" start="1206" peptide_ref="Pep107" dBSequence_ref="DBSeq4600" id="PepEv_5805_107_1206"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1319 <PeptideEvidence isDecoy="false" post="M" pre="K" end="1158" start="1151" peptide_ref="Pep107" dBSequence_ref="DBSeq5853" id="PepEv_7003_107_1151"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1320 <PeptideEvidence isDecoy="false" post="M" pre="K" end="1260" start="1253" peptide_ref="Pep107" dBSequence_ref="DBSeq33873" id="PepEv_35125_107_1253"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1321 <PeptideEvidence isDecoy="false" post="I" pre="K" end="787" start="781" peptide_ref="Pep108" dBSequence_ref="DBSeq7051" id="PepEv_7831_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1322 <PeptideEvidence isDecoy="false" post="I" pre="K" end="787" start="781" peptide_ref="Pep108" dBSequence_ref="DBSeq7906" id="PepEv_8686_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1323 <PeptideEvidence isDecoy="false" post="I" pre="K" end="787" start="781" peptide_ref="Pep108" dBSequence_ref="DBSeq35173" id="PepEv_35953_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1324 <PeptideEvidence isDecoy="false" post="I" pre="K" end="787" start="781" peptide_ref="Pep108" dBSequence_ref="DBSeq36028" id="PepEv_36808_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1325 <PeptideEvidence isDecoy="true" post="A" pre="V" end="86" start="80" peptide_ref="Pep109" dBSequence_ref="DBSeq94113" id="PepEv_94192_109_80"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1326 <PeptideEvidence isDecoy="true" post="F" pre="A" end="49" start="43" peptide_ref="Pep110" dBSequence_ref="DBSeq78837" id="PepEv_78879_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1327 <PeptideEvidence isDecoy="true" post="F" pre="A" end="49" start="43" peptide_ref="Pep110" dBSequence_ref="DBSeq79051" id="PepEv_79093_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1328 <PeptideEvidence isDecoy="true" post="F" pre="A" end="49" start="43" peptide_ref="Pep110" dBSequence_ref="DBSeq79258" id="PepEv_79300_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1329 <PeptideEvidence isDecoy="true" post="F" pre="A" end="49" start="43" peptide_ref="Pep110" dBSequence_ref="DBSeq79465" id="PepEv_79507_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1330 <PeptideEvidence isDecoy="true" post="F" pre="A" end="49" start="43" peptide_ref="Pep110" dBSequence_ref="DBSeq100983" id="PepEv_101025_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1331 <PeptideEvidence isDecoy="false" post="R" pre="R" end="481" start="469" peptide_ref="Pep111" dBSequence_ref="DBSeq43937" id="PepEv_44405_111_469"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1332 <PeptideEvidence isDecoy="false" post="F" pre="T" end="1012" start="1006" peptide_ref="Pep112" dBSequence_ref="DBSeq4600" id="PepEv_5605_112_1006"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1333 <PeptideEvidence isDecoy="false" post="F" pre="T" end="957" start="951" peptide_ref="Pep112" dBSequence_ref="DBSeq5853" id="PepEv_6803_112_951"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1334 <PeptideEvidence isDecoy="false" post="F" pre="T" end="1059" start="1053" peptide_ref="Pep112" dBSequence_ref="DBSeq33873" id="PepEv_34925_112_1053"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1335 <PeptideEvidence isDecoy="true" post="K" pre="R" end="3019" start="3012" peptide_ref="Pep113" dBSequence_ref="DBSeq65480" id="PepEv_68491_113_3012"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1336 <PeptideEvidence isDecoy="true" post="K" pre="R" end="2949" start="2942" peptide_ref="Pep113" dBSequence_ref="DBSeq73091" id="PepEv_76032_113_2942"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1337 <PeptideEvidence isDecoy="true" post="K" pre="R" end="2949" start="2942" peptide_ref="Pep113" dBSequence_ref="DBSeq94489" id="PepEv_97430_113_2942"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1338 <PeptideEvidence isDecoy="false" post="T" pre="I" end="6251" start="6240" peptide_ref="Pep114" dBSequence_ref="DBSeq9505" id="PepEv_15744_114_6240"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1339 <PeptideEvidence isDecoy="false" post="T" pre="I" end="4209" start="4198" peptide_ref="Pep114" dBSequence_ref="DBSeq17116" id="PepEv_21313_114_4198"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1340 <PeptideEvidence isDecoy="false" post="T" pre="I" end="4133" start="4122" peptide_ref="Pep114" dBSequence_ref="DBSeq38514" id="PepEv_42635_114_4122"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1341 <PeptideEvidence isDecoy="true" post="Q" pre="K" end="103" start="95" peptide_ref="Pep115" dBSequence_ref="DBSeq86184" id="PepEv_86278_115_95"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1342 <PeptideEvidence isDecoy="true" post="Q" pre="K" end="103" start="95" peptide_ref="Pep115" dBSequence_ref="DBSeq101198" id="PepEv_101292_115_95"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1343 <PeptideEvidence isDecoy="false" post="L" pre="R" end="1013" start="1004" peptide_ref="Pep116" dBSequence_ref="DBSeq4600" id="PepEv_5603_116_1004"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1344 <PeptideEvidence isDecoy="false" post="L" pre="R" end="958" start="949" peptide_ref="Pep116" dBSequence_ref="DBSeq5853" id="PepEv_6801_116_949"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1345 <PeptideEvidence isDecoy="false" post="L" pre="R" end="1060" start="1051" peptide_ref="Pep116" dBSequence_ref="DBSeq33873" id="PepEv_34923_116_1051"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1346 <PeptideEvidence isDecoy="true" post="M" pre="L" end="6542" start="6533" peptide_ref="Pep117" dBSequence_ref="DBSeq65480" id="PepEv_72012_117_6533"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1347 <PeptideEvidence isDecoy="true" post="M" pre="L" end="4432" start="4423" peptide_ref="Pep117" dBSequence_ref="DBSeq73091" id="PepEv_77513_117_4423"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1348 <PeptideEvidence isDecoy="true" post="M" pre="L" end="4432" start="4423" peptide_ref="Pep117" dBSequence_ref="DBSeq94489" id="PepEv_98911_117_4423"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1349 <PeptideEvidence isDecoy="true" post="Q" pre="K" end="2573" start="2563" peptide_ref="Pep118" dBSequence_ref="DBSeq65480" id="PepEv_68042_118_2563"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1350 <PeptideEvidence isDecoy="true" post="Q" pre="K" end="2503" start="2493" peptide_ref="Pep118" dBSequence_ref="DBSeq73091" id="PepEv_75583_118_2493"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1351 <PeptideEvidence isDecoy="true" post="Q" pre="K" end="2503" start="2493" peptide_ref="Pep118" dBSequence_ref="DBSeq94489" id="PepEv_96981_118_2493"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1352 <PeptideEvidence isDecoy="false" post="E" pre="K" end="22" start="13" peptide_ref="Pep119" dBSequence_ref="DBSeq36883" id="PepEv_36895_119_13"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1353 <PeptideEvidence isDecoy="true" post="Q" pre="R" end="337" start="331" peptide_ref="Pep120" dBSequence_ref="DBSeq60575" id="PepEv_60905_120_331"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1354 <PeptideEvidence isDecoy="true" post="Q" pre="R" end="337" start="331" peptide_ref="Pep120" dBSequence_ref="DBSeq61828" id="PepEv_62158_120_331"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1355 <PeptideEvidence isDecoy="true" post="Q" pre="R" end="337" start="331" peptide_ref="Pep120" dBSequence_ref="DBSeq89848" id="PepEv_90178_120_331"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1356 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1374" start="1364" peptide_ref="Pep121" dBSequence_ref="DBSeq65480" id="PepEv_66843_121_1364"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1357 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1304" start="1294" peptide_ref="Pep121" dBSequence_ref="DBSeq73091" id="PepEv_74384_121_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1358 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1304" start="1294" peptide_ref="Pep121" dBSequence_ref="DBSeq94489" id="PepEv_95782_121_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1359 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1374" start="1364" peptide_ref="Pep122" dBSequence_ref="DBSeq65480" id="PepEv_66843_122_1364"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1360 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1304" start="1294" peptide_ref="Pep122" dBSequence_ref="DBSeq73091" id="PepEv_74384_122_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1361 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1304" start="1294" peptide_ref="Pep122" dBSequence_ref="DBSeq94489" id="PepEv_95782_122_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1362 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1374" start="1364" peptide_ref="Pep123" dBSequence_ref="DBSeq65480" id="PepEv_66843_123_1364"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1363 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1304" start="1294" peptide_ref="Pep123" dBSequence_ref="DBSeq73091" id="PepEv_74384_123_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1364 <PeptideEvidence isDecoy="true" post="K" pre="N" end="1304" start="1294" peptide_ref="Pep123" dBSequence_ref="DBSeq94489" id="PepEv_95782_123_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1365 </SequenceCollection>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1366 <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1367 <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1368 <InputSpectra spectraData_ref="SID_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1369 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1370 </SpectrumIdentification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1371 </AnalysisCollection>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1372 <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1373 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1374 <SearchType>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1375 <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1376 </SearchType>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1377 <AdditionalSearchParams>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1378 <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1379 <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1380 <userParam value="true" name="TargetDecoyApproach"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1381 <userParam value="-1" name="MinIsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1382 <userParam value="2" name="MaxIsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1383 <userParam value="HCD" name="FragmentMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1384 <userParam value="QExactive" name="Instrument"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1385 <userParam value="Standard" name="Protocol"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1386 <userParam value="1" name="NumTolerableTermini"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1387 <userParam value="1" name="NumMatchesPerSpec"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1388 <userParam value="2" name="MaxNumModifications"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1389 <userParam value="6" name="MinPepLength"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1390 <userParam value="40" name="MaxPepLength"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1391 <userParam value="2" name="MinCharge"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1392 <userParam value="3" name="MaxCharge"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1393 </AdditionalSearchParams>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1394 <ModificationParams>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1395 <SearchModification residues="C" massDelta="58.00548" fixedMod="true">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1396 <cvParam accession="MS:1001460" cvRef="UNIMOD" name="unknown modification"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1397 </SearchModification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1398 <SearchModification residues="M" massDelta="15.9949" fixedMod="false">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1399 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1400 </SearchModification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1401 <SearchModification residues="Q" massDelta="-17.026" fixedMod="false">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1402 <SpecificityRules>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1403 <cvParam accession="MS:1001189" cvRef="PSI-MS" name="modification specificity N-term"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1404 </SpecificityRules>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1405 <cvParam accession="UNIMOD:28" cvRef="UNIMOD" name="Gln-&gt;pyro-Glu"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1406 </SearchModification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1407 <SearchModification residues="N" massDelta="0.984016" fixedMod="false">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1408 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1409 </SearchModification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1410 <SearchModification residues="Q" massDelta="0.984016" fixedMod="false">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1411 <cvParam accession="UNIMOD:7" cvRef="UNIMOD" name="Deamidated"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1412 </SearchModification>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1413 </ModificationParams>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1414 <Enzymes>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1415 <Enzyme missedCleavages="1000" semiSpecific="true" id="Tryp">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1416 <EnzymeName>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1417 <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1418 </EnzymeName>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1419 </Enzyme>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1420 </Enzymes>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1421 <ParentTolerance>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1422 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="50.0" name="search tolerance plus value"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1423 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="50.0" name="search tolerance minus value"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1424 </ParentTolerance>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1425 <Threshold>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1426 <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1427 </Threshold>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1428 </SpectrumIdentificationProtocol>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1429 </AnalysisProtocolCollection>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1430 <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1431 <Inputs>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1432 <SearchDatabase numDatabaseSequences="144" location="C:\idpicker\branches\IDPicker-3\TestData\cow.protein.PRG2012-subset.fasta" id="SearchDB_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1433 <FileFormat>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1434 <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1435 </FileFormat>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1436 <DatabaseName>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1437 <userParam name="cow.protein.PRG2012-subset.fasta"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1438 </DatabaseName>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1439 <cvParam accession="MS:1001197" cvRef="PSI-MS" name="DB composition target+decoy"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1440 <cvParam accession="MS:1001283" cvRef="PSI-MS" value="^XXX" name="decoy DB accession regexp"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1441 <cvParam accession="MS:1001195" cvRef="PSI-MS" name="decoy DB type reverse"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1442 </SearchDatabase>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1443 <SpectraData location="C:\idpicker\branches\IDPicker-3\TestData\201208-378803.mzML" name="201208-378803.mzML" id="SID_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1444 <FileFormat>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1445 <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1446 </FileFormat>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1447 <SpectrumIDFormat>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1448 <cvParam accession="MS:1000770" cvRef="PSI-MS" name="WIFF nativeID format"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1449 </SpectrumIDFormat>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1450 </SpectraData>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1451 </Inputs>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1452 <AnalysisData>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1453 <SpectrumIdentificationList id="SI_LIST_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1454 <FragmentationTable>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1455 <Measure id="Measure_MZ">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1456 <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1457 </Measure>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1458 </FragmentationTable>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1459 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1204 experiment=3" id="SIR_32">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1460 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep1" calculatedMassToCharge="723.3087158203125" experimentalMassToCharge="722.7725830078125" chargeState="2" id="SII_32_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1461 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44222_1_286"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1462 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="72" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1463 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="92" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1464 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.838389E-13" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1465 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.7266708E-8" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1466 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1467 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1468 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1469 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1470 <userParam value="0.015929203" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1471 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1472 <userParam value="0.015929203" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1473 <userParam value="565.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1474 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1475 <userParam value="11.9103775" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1476 <userParam value="8.494428" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1477 <userParam value="11.9103775" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1478 <userParam value="8.494428" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1479 <userParam value="-11.9103775" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1480 <userParam value="8.494428" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1481 <userParam value="-11.9103775" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1482 <userParam value="8.494428" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1483 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1484 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1485 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1222 experiment=2" id="SIR_83">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1486 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep2" calculatedMassToCharge="582.8109741210938" experimentalMassToCharge="582.2852172851562" chargeState="2" id="SII_83_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1487 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44002_2_66"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1488 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="99" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1489 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="104" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1490 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.9093915E-12" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1491 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.5454998E-7" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1492 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1493 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1494 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1495 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1496 <userParam value="0.014070353" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1497 <userParam value="0.0030150753" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1498 <userParam value="0.011055277" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1499 <userParam value="995.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1500 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1501 <userParam value="12.346499" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1502 <userParam value="1.2952032" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1503 <userParam value="12.346499" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1504 <userParam value="1.2952032" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1505 <userParam value="5.10675" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1506 <userParam value="11.315242" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1507 <userParam value="5.10675" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1508 <userParam value="11.315242" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1509 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1510 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1511 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1209 experiment=3" id="SIR_40">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1512 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep3" calculatedMassToCharge="571.2286376953125" experimentalMassToCharge="570.7028198242188" chargeState="2" id="SII_40_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1513 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44435_3_499"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1514 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="64" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1515 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="91" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1516 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.8520605E-10" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1517 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.1221147E-5" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1518 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1519 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1520 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1521 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1522 <userParam value="0.007909604" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1523 <userParam value="0.0056497175" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1524 <userParam value="0.002259887" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1525 <userParam value="885.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1526 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1527 <userParam value="6.390872" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1528 <userParam value="4.4229927" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1529 <userParam value="6.390872" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1530 <userParam value="4.4229927" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1531 <userParam value="4.4229927" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1532 <userParam value="6.390872" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1533 <userParam value="4.4229927" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1534 <userParam value="6.390872" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1535 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1536 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1537 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1193 experiment=3" id="SIR_13">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1538 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep4" calculatedMassToCharge="521.6927490234375" experimentalMassToCharge="521.1669311523438" chargeState="2" id="SII_13_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1539 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31280_4_188"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1540 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31993_4_132"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1541 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32679_4_105"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1542 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47796_4_132"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1543 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="47" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1544 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="59" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1545 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.4666023E-8" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1546 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="5.7405746E-4" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1547 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1548 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1549 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1550 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1551 <userParam value="0.017667845" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1552 <userParam value="0.010600707" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1553 <userParam value="0.007067138" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1554 <userParam value="283.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1555 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1556 <userParam value="6.260926" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1557 <userParam value="6.114981" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1558 <userParam value="6.260926" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1559 <userParam value="6.114981" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1560 <userParam value="-6.260926" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1561 <userParam value="6.114981" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1562 <userParam value="-6.260926" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1563 <userParam value="6.114981" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1564 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1565 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1566 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1212 experiment=4" id="SIR_52">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1567 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep5" calculatedMassToCharge="598.8353271484375" experimentalMassToCharge="598.3059692382812" chargeState="2" id="SII_52_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1568 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46751_5_130"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1569 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="25" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1570 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="55" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1571 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.9975095E-8" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1572 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.0015872911" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1573 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1574 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1575 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1576 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1577 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1578 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1579 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1580 <userParam value="443.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1581 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1582 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1583 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1186 experiment=2" id="SIR_3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1584 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep6" calculatedMassToCharge="526.7192993164062" experimentalMassToCharge="526.192138671875" chargeState="2" id="SII_3_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1585 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31288_6_196"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1586 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32001_6_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1587 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32687_6_113"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1588 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47804_6_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1589 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1590 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="52" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1591 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.972242E-7" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1592 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.023497188" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1593 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1594 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1595 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1596 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1597 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1598 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1599 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1600 <userParam value="203.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1601 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1602 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep7" calculatedMassToCharge="526.7192993164062" experimentalMassToCharge="526.192138671875" chargeState="2" id="SII_3_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1603 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31288_7_196"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1604 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32001_7_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1605 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32687_7_113"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1606 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47804_7_140"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1607 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1608 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="52" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1609 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.972242E-7" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1610 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.023497188" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1611 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1612 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1613 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1614 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1615 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1616 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1617 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1618 <userParam value="203.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1619 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1620 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1621 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1224 experiment=2" id="SIR_86">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1622 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep8" calculatedMassToCharge="576.2904663085938" experimentalMassToCharge="576.2933349609375" chargeState="3" id="SII_86_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1623 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84238_8_607"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1624 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85050_8_603"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1625 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85817_8_558"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1626 <PeptideEvidenceRef peptideEvidence_ref="PepEv_93903_8_418"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1627 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1628 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1629 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.866312E-7" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1630 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.031730343" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1631 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1632 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1633 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1634 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1635 <userParam value="0.014723927" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1636 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1637 <userParam value="0.014723927" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1638 <userParam value="815.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1639 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1640 <userParam value="4.7163124" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1641 <userParam value="0.95685685" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1642 <userParam value="4.7163124" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1643 <userParam value="0.95685685" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1644 <userParam value="-0.956856" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1645 <userParam value="4.7163124" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1646 <userParam value="-0.956856" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1647 <userParam value="4.7163124" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1648 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1649 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1650 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1203 experiment=3" id="SIR_30">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1651 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep9" calculatedMassToCharge="519.7498779296875" experimentalMassToCharge="520.2384033203125" chargeState="2" id="SII_30_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1652 <PeptideEvidenceRef peptideEvidence_ref="PepEv_68808_9_3329"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1653 <PeptideEvidenceRef peptideEvidence_ref="PepEv_76349_9_3259"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1654 <PeptideEvidenceRef peptideEvidence_ref="PepEv_97747_9_3259"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1655 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="22" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1656 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="46" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1657 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.3480566E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1658 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.05276563" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1659 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1660 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1661 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1662 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1663 <userParam value="0.006060606" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1664 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1665 <userParam value="0.006060606" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1666 <userParam value="495.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1667 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1668 <userParam value="15.161446" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1669 <userParam value="3.2528768" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1670 <userParam value="15.161446" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1671 <userParam value="3.2528768" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1672 <userParam value="15.161446" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1673 <userParam value="3.2528768" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1674 <userParam value="15.161446" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1675 <userParam value="3.2528768" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1676 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1677 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1678 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1217 experiment=4" id="SIR_71">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1679 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep10" calculatedMassToCharge="572.3528442382812" experimentalMassToCharge="571.8231811523438" chargeState="2" id="SII_71_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1680 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44484_10_548"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1681 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="20" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1682 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="62" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1683 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.4364954E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1684 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.056788974" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1685 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1686 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1687 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1688 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1689 <userParam value="7.9113926E-4" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1690 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1691 <userParam value="7.9113926E-4" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1692 <userParam value="1264.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1693 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1694 <userParam value="8.27474" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1695 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1696 <userParam value="8.27474" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1697 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1698 <userParam value="-8.27474" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1699 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1700 <userParam value="-8.27474" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1701 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1702 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1703 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1704 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1211 experiment=5" id="SIR_49">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1705 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep11" calculatedMassToCharge="497.73675537109375" experimentalMassToCharge="498.2347412109375" chargeState="2" id="SII_49_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1706 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31719_11_627"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1707 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32432_11_571"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1708 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33118_11_544"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1709 <PeptideEvidenceRef peptideEvidence_ref="PepEv_48235_11_571"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1710 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="11" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1711 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="45" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1712 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.5355578E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1713 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.06041499" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1714 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1715 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1716 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1717 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1718 <userParam value="0.03366059" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1719 <userParam value="0.014025246" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1720 <userParam value="0.019635344" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1721 <userParam value="713.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1722 <userParam value="4" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1723 <userParam value="7.4274583" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1724 <userParam value="4.0042377" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1725 <userParam value="7.4274583" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1726 <userParam value="4.0042377" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1727 <userParam value="-6.274295" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1728 <userParam value="5.6421876" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1729 <userParam value="-6.274295" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1730 <userParam value="5.6421876" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1731 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1732 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1733 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1231 experiment=2" id="SIR_96">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1734 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep12" calculatedMassToCharge="489.89654541015625" experimentalMassToCharge="490.2488098144531" chargeState="3" id="SII_96_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1735 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13440_12_3936"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1736 <PeptideEvidenceRef peptideEvidence_ref="PepEv_19009_12_1894"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1737 <PeptideEvidenceRef peptideEvidence_ref="PepEv_40331_12_1818"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1738 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1739 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="58" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1740 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.1975782E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1741 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.08725924" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1742 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1743 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1744 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1745 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1746 <userParam value="0.050736498" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1747 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1748 <userParam value="0.050736498" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1749 <userParam value="611.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1750 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1751 <userParam value="12.184335" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1752 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1753 <userParam value="12.184335" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1754 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1755 <userParam value="-12.184335" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1756 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1757 <userParam value="-12.184335" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1758 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1759 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1760 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1761 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1197 experiment=2" id="SIR_16">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1762 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep13" calculatedMassToCharge="474.7352600097656" experimentalMassToCharge="474.2104797363281" chargeState="2" id="SII_16_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1763 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47574_13_469"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1764 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="21" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1765 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1766 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.249831E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1767 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.12720488" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1768 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1769 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1770 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1771 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1772 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1773 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1774 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1775 <userParam value="352.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1776 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1777 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1778 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1207 experiment=3" id="SIR_36">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1779 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep14" calculatedMassToCharge="467.5892639160156" experimentalMassToCharge="467.236083984375" chargeState="3" id="SII_36_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1780 <PeptideEvidenceRef peptideEvidence_ref="PepEv_28248_14_592"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1781 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29064_14_592"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1782 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29876_14_592"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1783 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1784 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="51" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1785 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.397543E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1786 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.17534322" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1787 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1788 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1789 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1790 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1791 <userParam value="0.008241759" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1792 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1793 <userParam value="0.008241759" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1794 <userParam value="364.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1795 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1796 <userParam value="5.827341" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1797 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1798 <userParam value="5.827341" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1799 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1800 <userParam value="5.827341" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1801 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1802 <userParam value="5.827341" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1803 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1804 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1805 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1806 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1181 experiment=2" id="SIR_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1807 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep15" calculatedMassToCharge="506.2595520019531" experimentalMassToCharge="506.7447204589844" chargeState="2" id="SII_1_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1808 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10834_15_1330"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1809 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18443_15_1328"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1810 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39765_15_1252"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1811 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1812 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="35" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1813 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.519676E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1814 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.17591482" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1815 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1816 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1817 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1818 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1819 <userParam value="0.031446543" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1820 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1821 <userParam value="0.031446543" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1822 <userParam value="159.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1823 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1824 <userParam value="11.25015" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1825 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1826 <userParam value="11.25015" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1827 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1828 <userParam value="11.25015" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1829 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1830 <userParam value="11.25015" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1831 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1832 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1833 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1834 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1218 experiment=4" id="SIR_75">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1835 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep16" calculatedMassToCharge="647.3197021484375" experimentalMassToCharge="647.8163452148438" chargeState="2" id="SII_75_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1836 <PeptideEvidenceRef peptideEvidence_ref="PepEv_69546_16_4067"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1837 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1838 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="51" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1839 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.698364E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1840 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.26480642" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1841 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1842 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1843 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1844 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1845 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1846 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1847 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1848 <userParam value="360.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1849 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1850 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1851 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1209 experiment=2" id="SIR_39">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1852 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep17" calculatedMassToCharge="451.93316650390625" experimentalMassToCharge="452.254638671875" chargeState="3" id="SII_39_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1853 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31410_17_318"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1854 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32123_17_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1855 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32809_17_235"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1856 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47926_17_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1857 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="7" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1858 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="54" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1859 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.0359506E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1860 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.28054446" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1861 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1862 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1863 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1864 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1865 <userParam value="0.0087890625" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1866 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1867 <userParam value="0.0087890625" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1868 <userParam value="1024.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1869 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1870 <userParam value="7.8640194" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1871 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1872 <userParam value="7.8640194" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1873 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1874 <userParam value="7.8640194" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1875 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1876 <userParam value="7.8640194" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1877 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1878 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1879 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep18" calculatedMassToCharge="452.26116943359375" experimentalMassToCharge="452.254638671875" chargeState="3" id="SII_39_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1880 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31410_18_318"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1881 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32123_18_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1882 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32809_18_235"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1883 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47926_18_262"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1884 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="7" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1885 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="54" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1886 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.0359506E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1887 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.28054446" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1888 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1889 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1890 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1891 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1892 <userParam value="0.0087890625" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1893 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1894 <userParam value="0.0087890625" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1895 <userParam value="1024.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1896 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1897 <userParam value="7.8640194" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1898 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1899 <userParam value="7.8640194" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1900 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1901 <userParam value="7.8640194" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1902 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1903 <userParam value="7.8640194" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1904 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1905 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1906 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1907 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1198 experiment=3" id="SIR_18">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1908 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep19" calculatedMassToCharge="613.8042602539062" experimentalMassToCharge="613.275634765625" chargeState="2" id="SII_18_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1909 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9430_19_81"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1910 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46547_19_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1911 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-5" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1912 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="52" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1913 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.3371266E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1914 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.29255325" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1915 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1916 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1917 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1918 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1919 <userParam value="0.030927835" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1920 <userParam value="0.005154639" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1921 <userParam value="0.025773196" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1922 <userParam value="194.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1923 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1924 <userParam value="9.426842" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1925 <userParam value="6.2118626" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1926 <userParam value="9.426842" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1927 <userParam value="6.2118626" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1928 <userParam value="2.6945887" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1929 <userParam value="10.963201" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1930 <userParam value="2.6945887" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1931 <userParam value="10.963201" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1932 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1933 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1934 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1583 experiment=2" id="SIR_107">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1935 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep20" calculatedMassToCharge="487.2632141113281" experimentalMassToCharge="487.24053955078125" chargeState="3" id="SII_107_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1936 <PeptideEvidenceRef peptideEvidence_ref="PepEv_11394_20_1890"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1937 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1938 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="45" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1939 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.9963365E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1940 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.3213488" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1941 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1942 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1943 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1944 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1945 <userParam value="0.011337869" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1946 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1947 <userParam value="0.011337869" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1948 <userParam value="441.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1949 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1950 <userParam value="10.488489" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1951 <userParam value="4.8589997" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1952 <userParam value="10.488489" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1953 <userParam value="4.8589997" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1954 <userParam value="-4.8590016" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1955 <userParam value="10.488488" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1956 <userParam value="-4.8590016" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1957 <userParam value="10.488488" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1958 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1959 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep21" calculatedMassToCharge="487.2632141113281" experimentalMassToCharge="487.24053955078125" chargeState="3" id="SII_107_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1960 <PeptideEvidenceRef peptideEvidence_ref="PepEv_11394_21_1890"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1961 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1962 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="45" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1963 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.9963365E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1964 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.3213488" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1965 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1966 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1967 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1968 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1969 <userParam value="0.011337869" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1970 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1971 <userParam value="0.011337869" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1972 <userParam value="441.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1973 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1974 <userParam value="10.488489" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1975 <userParam value="4.8589997" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1976 <userParam value="10.488489" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1977 <userParam value="4.8589997" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1978 <userParam value="-4.8590016" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1979 <userParam value="10.488488" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1980 <userParam value="-4.8590016" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1981 <userParam value="10.488488" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1982 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1983 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1984 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1210 experiment=2" id="SIR_43">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1985 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep22" calculatedMassToCharge="597.617431640625" experimentalMassToCharge="597.2890625" chargeState="3" id="SII_43_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1986 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12916_22_3412"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1987 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1988 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="76" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1989 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.062121E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1990 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.36417943" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1991 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1992 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1993 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1994 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1995 <userParam value="0.0113464445" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1996 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1997 <userParam value="0.0113464445" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1998 <userParam value="1322.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
1999 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2000 <userParam value="11.612012" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2001 <userParam value="3.9591303" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2002 <userParam value="11.612012" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2003 <userParam value="3.9591303" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2004 <userParam value="-11.612012" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2005 <userParam value="3.9591303" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2006 <userParam value="-11.612012" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2007 <userParam value="3.9591303" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2008 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2009 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep23" calculatedMassToCharge="596.96142578125" experimentalMassToCharge="597.2890625" chargeState="3" id="SII_43_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2010 <PeptideEvidenceRef peptideEvidence_ref="PepEv_16076_23_6572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2011 <PeptideEvidenceRef peptideEvidence_ref="PepEv_21645_23_4530"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2012 <PeptideEvidenceRef peptideEvidence_ref="PepEv_42967_23_4454"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2013 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2014 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="76" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2015 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.062121E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2016 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.36417943" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2017 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2018 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2019 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2020 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2021 <userParam value="0.012859304" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2022 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2023 <userParam value="0.012859304" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2024 <userParam value="1322.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2025 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2026 <userParam value="8.212099" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2027 <userParam value="4.7917786" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2028 <userParam value="8.212099" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2029 <userParam value="4.7917786" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2030 <userParam value="-8.212099" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2031 <userParam value="4.7917786" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2032 <userParam value="-8.212099" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2033 <userParam value="4.7917786" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2034 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2035 <SpectrumIdentificationItem passThreshold="true" rank="3" peptide_ref="Pep24" calculatedMassToCharge="597.2894287109375" experimentalMassToCharge="597.2890625" chargeState="3" id="SII_43_3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2036 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12916_24_3412"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2037 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2038 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="76" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2039 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.062121E-6" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2040 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.36417943" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2041 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2042 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2043 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2044 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2045 <userParam value="0.0113464445" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2046 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2047 <userParam value="0.0113464445" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2048 <userParam value="1322.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2049 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2050 <userParam value="11.612012" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2051 <userParam value="3.9591303" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2052 <userParam value="11.612012" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2053 <userParam value="3.9591303" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2054 <userParam value="-11.612012" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2055 <userParam value="3.9591303" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2056 <userParam value="-11.612012" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2057 <userParam value="3.9591303" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2058 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2059 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2060 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1219 experiment=3" id="SIR_78">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2061 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep25" calculatedMassToCharge="509.7512512207031" experimentalMassToCharge="509.2569580078125" chargeState="2" id="SII_78_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2062 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46863_25_19"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2063 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2064 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="43" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2065 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.0074405E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2066 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.39636737" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2067 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.13636364" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2068 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.13636364" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2069 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2070 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2071 <userParam value="0.011019284" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2072 <userParam value="0.005509642" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2073 <userParam value="0.005509642" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2074 <userParam value="726.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2075 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2076 <userParam value="9.748973" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2077 <userParam value="5.980916" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2078 <userParam value="9.748973" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2079 <userParam value="5.980916" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2080 <userParam value="-2.384351" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2081 <userParam value="11.186094" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2082 <userParam value="-2.384351" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2083 <userParam value="11.186094" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2084 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2085 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2086 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1428 experiment=2" id="SIR_105">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2087 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep26" calculatedMassToCharge="584.9473876953125" experimentalMassToCharge="585.301513671875" chargeState="3" id="SII_105_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2088 <PeptideEvidenceRef peptideEvidence_ref="PepEv_60575_26_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2089 <PeptideEvidenceRef peptideEvidence_ref="PepEv_61828_26_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2090 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89848_26_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2091 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2092 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="98" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2093 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.0263566E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2094 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.41246194" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2095 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.17391305" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2096 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.17391305" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2097 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2098 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2099 <userParam value="0.024242423" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2100 <userParam value="0.024242423" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2101 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2102 <userParam value="330.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2103 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2104 <userParam value="5.817651" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2105 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2106 <userParam value="5.817651" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2107 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2108 <userParam value="-5.817651" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2109 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2110 <userParam value="-5.817651" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2111 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2112 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2113 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2114 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1213 experiment=5" id="SIR_57">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2115 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep27" calculatedMassToCharge="574.3145751953125" experimentalMassToCharge="575.3018188476562" chargeState="2" id="SII_57_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2116 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31780_27_688"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2117 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32493_27_632"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2118 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33179_27_605"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2119 <PeptideEvidenceRef peptideEvidence_ref="PepEv_48296_27_632"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2120 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="0" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2121 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="52" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2122 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.0856567E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2123 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.42714077" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2124 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.17391305" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2125 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.17391305" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2126 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2127 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2128 <userParam value="0.019005848" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2129 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2130 <userParam value="0.019005848" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2131 <userParam value="684.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2132 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2133 <userParam value="16.198454" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2134 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2135 <userParam value="16.198454" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2136 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2137 <userParam value="-16.198454" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2138 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2139 <userParam value="-16.198454" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2140 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2141 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2142 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2143 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1201 experiment=3" id="SIR_25">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2144 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep28" calculatedMassToCharge="511.5643615722656" experimentalMassToCharge="512.2169799804688" chargeState="3" id="SII_25_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2145 <PeptideEvidenceRef peptideEvidence_ref="PepEv_67078_28_1599"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2146 <PeptideEvidenceRef peptideEvidence_ref="PepEv_74619_28_1529"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2147 <PeptideEvidenceRef peptideEvidence_ref="PepEv_96017_28_1529"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2148 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="18" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2149 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="78" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2150 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.0915638E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2151 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.43696392" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2152 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.2" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2153 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.2" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2154 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2155 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2156 <userParam value="0.030546624" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2157 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2158 <userParam value="0.030546624" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2159 <userParam value="622.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2160 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2161 <userParam value="7.1792417" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2162 <userParam value="5.5463724" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2163 <userParam value="7.1792417" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2164 <userParam value="5.5463724" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2165 <userParam value="-5.2242913" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2166 <userParam value="7.4169087" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2167 <userParam value="-5.2242913" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2168 <userParam value="7.4169087" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2169 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2170 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2171 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1219 experiment=4" id="SIR_79">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2172 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep29" calculatedMassToCharge="482.2301330566406" experimentalMassToCharge="482.21160888671875" chargeState="2" id="SII_79_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2173 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47594_29_489"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2174 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2175 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="47" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2176 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.2933962E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2177 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.50626117" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2178 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.2" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2179 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.2" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2180 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2181 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2182 <userParam value="0.0072202166" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2183 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2184 <userParam value="0.0072202166" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2185 <userParam value="277.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2186 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2187 <userParam value="4.8646097" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2188 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2189 <userParam value="4.8646097" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2190 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2191 <userParam value="-4.8646097" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2192 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2193 <userParam value="-4.8646097" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2194 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2195 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2196 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2197 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1215 experiment=4" id="SIR_64">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2198 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep30" calculatedMassToCharge="673.8528442382812" experimentalMassToCharge="674.3531494140625" chargeState="2" id="SII_64_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2199 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47057_30_213"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2200 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-1" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2201 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="68" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2202 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.3553926E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2203 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.5404357" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2204 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.2" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2205 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.2" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2206 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2207 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2208 <userParam value="0.009009009" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2209 <userParam value="0.009009009" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2210 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2211 <userParam value="333.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2212 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2213 <userParam value="7.1767015" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2214 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2215 <userParam value="7.1767015" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2216 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2217 <userParam value="-7.1767015" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2218 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2219 <userParam value="-7.1767015" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2220 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2221 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2222 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2223 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1627 experiment=2" id="SIR_108">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2224 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep31" calculatedMassToCharge="582.78955078125" experimentalMassToCharge="582.2650756835938" chargeState="2" id="SII_108_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2225 <PeptideEvidenceRef peptideEvidence_ref="PepEv_104766_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2226 <PeptideEvidenceRef peptideEvidence_ref="PepEv_107640_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2227 <PeptideEvidenceRef peptideEvidence_ref="PepEv_108772_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2228 <PeptideEvidenceRef peptideEvidence_ref="PepEv_109872_31_414"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2229 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-20" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2230 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="38" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2231 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.4194763E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2232 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.5584788" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2233 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.24" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2234 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.24" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2235 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2236 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2237 <userParam value="0.012121212" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2238 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2239 <userParam value="0.012121212" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2240 <userParam value="165.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2241 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2242 <userParam value="12.496438" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2243 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2244 <userParam value="12.496438" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2245 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2246 <userParam value="-12.496438" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2247 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2248 <userParam value="-12.496438" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2249 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2250 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2251 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2252 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1193 experiment=2" id="SIR_12">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2253 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep32" calculatedMassToCharge="459.2141418457031" experimentalMassToCharge="458.7034606933594" chargeState="2" id="SII_12_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2254 <PeptideEvidenceRef peptideEvidence_ref="PepEv_65787_32_308"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2255 <PeptideEvidenceRef peptideEvidence_ref="PepEv_73332_32_242"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2256 <PeptideEvidenceRef peptideEvidence_ref="PepEv_94730_32_242"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2257 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="39" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2258 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="103" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2259 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.510376E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2260 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.59119135" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2261 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.26923078" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2262 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.26923078" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2263 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2264 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2265 <userParam value="0.02266289" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2266 <userParam value="0.0075542964" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2267 <userParam value="0.015108593" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2268 <userParam value="1059.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2269 <userParam value="4" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2270 <userParam value="7.538807" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2271 <userParam value="3.479948" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2272 <userParam value="7.538807" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2273 <userParam value="3.479948" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2274 <userParam value="7.538807" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2275 <userParam value="3.479948" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2276 <userParam value="7.538807" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2277 <userParam value="3.479948" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2278 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2279 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2280 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1217 experiment=5" id="SIR_72">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2281 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep33" calculatedMassToCharge="477.20001220703125" experimentalMassToCharge="476.6978454589844" chargeState="2" id="SII_72_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2282 <PeptideEvidenceRef peptideEvidence_ref="PepEv_7129_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2283 <PeptideEvidenceRef peptideEvidence_ref="PepEv_7984_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2284 <PeptideEvidenceRef peptideEvidence_ref="PepEv_35251_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2285 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36106_33_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2286 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2287 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="45" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2288 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.7757022E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2289 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.6911388" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2290 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.26923078" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2291 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.26923078" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2292 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2293 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2294 <userParam value="0.014675053" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2295 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2296 <userParam value="0.014675053" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2297 <userParam value="477.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2298 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2299 <userParam value="11.658885" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2300 <userParam value="4.23304" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2301 <userParam value="11.658885" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2302 <userParam value="4.23304" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2303 <userParam value="-11.658885" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2304 <userParam value="4.23304" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2305 <userParam value="-11.658885" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2306 <userParam value="4.23304" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2307 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2308 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2309 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1213 experiment=4" id="SIR_56">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2310 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep34" calculatedMassToCharge="413.18890380859375" experimentalMassToCharge="413.6736755371094" chargeState="2" id="SII_56_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2311 <PeptideEvidenceRef peptideEvidence_ref="PepEv_64768_34_33"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2312 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2313 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="43" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2314 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.9593463E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2315 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.75779676" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2316 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.30769232" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2317 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.30769232" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2318 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2319 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2320 <userParam value="0.016842106" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2321 <userParam value="0.0063157897" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2322 <userParam value="0.010526316" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2323 <userParam value="475.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2324 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2325 <userParam value="4.943127" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2326 <userParam value="1.2504684" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2327 <userParam value="4.943127" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2328 <userParam value="1.2504684" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2329 <userParam value="4.943127" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2330 <userParam value="1.2504684" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2331 <userParam value="4.943127" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2332 <userParam value="1.2504684" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2333 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2334 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2335 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1229 experiment=4" id="SIR_92">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2336 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep35" calculatedMassToCharge="832.3505249023438" experimentalMassToCharge="832.8515625" chargeState="2" id="SII_92_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2337 <PeptideEvidenceRef peptideEvidence_ref="PepEv_68861_35_3382"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2338 <PeptideEvidenceRef peptideEvidence_ref="PepEv_76402_35_3312"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2339 <PeptideEvidenceRef peptideEvidence_ref="PepEv_97800_35_3312"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2340 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-1" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2341 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="121" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2342 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.0680478E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2343 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.8310864" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2344 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.33333334" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2345 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.33333334" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2346 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2347 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2348 <userParam value="0.007490637" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2349 <userParam value="0.007490637" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2350 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2351 <userParam value="267.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2352 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2353 <userParam value="12.717966" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2354 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2355 <userParam value="12.717966" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2356 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2357 <userParam value="12.717966" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2358 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2359 <userParam value="12.717966" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2360 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2361 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2362 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2363 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1236 experiment=2" id="SIR_99">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2364 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep36" calculatedMassToCharge="482.7277526855469" experimentalMassToCharge="482.2271423339844" chargeState="2" id="SII_99_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2365 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31596_36_504"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2366 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32309_36_448"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2367 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32995_36_421"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2368 <PeptideEvidenceRef peptideEvidence_ref="PepEv_48112_36_448"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2369 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2370 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="59" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2371 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.080699E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2372 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.8144272" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2373 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.33333334" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2374 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.33333334" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2375 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2376 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2377 <userParam value="0.03629032" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2378 <userParam value="0.024193548" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2379 <userParam value="0.012096774" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2380 <userParam value="496.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2381 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2382 <userParam value="7.0841904" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2383 <userParam value="7.4031634" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2384 <userParam value="7.0841904" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2385 <userParam value="7.4031634" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2386 <userParam value="6.247406" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2387 <userParam value="8.12173" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2388 <userParam value="6.247406" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2389 <userParam value="8.12173" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2390 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2391 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2392 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1194 experiment=2" id="SIR_14">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2393 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep37" calculatedMassToCharge="451.88006591796875" experimentalMassToCharge="452.1972351074219" chargeState="3" id="SII_14_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2394 <PeptideEvidenceRef peptideEvidence_ref="PepEv_65747_37_268"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2395 <PeptideEvidenceRef peptideEvidence_ref="PepEv_73298_37_208"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2396 <PeptideEvidenceRef peptideEvidence_ref="PepEv_94696_37_208"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2397 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2398 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="60" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2399 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.195077E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2400 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.875243" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2401 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.3448276" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2402 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.3448276" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2403 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2404 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2405 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2406 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2407 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2408 <userParam value="273.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2409 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2410 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2411 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1220 experiment=2" id="SIR_80">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2412 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep38" calculatedMassToCharge="410.2263488769531" experimentalMassToCharge="410.2142639160156" chargeState="3" id="SII_80_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2413 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13046_38_3542"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2414 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2415 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="53" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2416 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.4015799E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2417 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.9494166" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2418 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.3448276" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2419 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.3448276" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2420 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2421 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2422 <userParam value="0.034199726" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2423 <userParam value="0.0013679891" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2424 <userParam value="0.032831736" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2425 <userParam value="731.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2426 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2427 <userParam value="7.629404" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2428 <userParam value="2.2732437" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2429 <userParam value="7.629404" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2430 <userParam value="2.2732437" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2431 <userParam value="-2.2732427" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2432 <userParam value="7.629404" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2433 <userParam value="-2.2732427" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2434 <userParam value="7.629404" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2435 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2436 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2437 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1230 experiment=3" id="SIR_95">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2438 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep39" calculatedMassToCharge="613.6126708984375" experimentalMassToCharge="613.2512817382812" chargeState="3" id="SII_95_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2439 <PeptideEvidenceRef peptideEvidence_ref="PepEv_7151_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2440 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8006_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2441 <PeptideEvidenceRef peptideEvidence_ref="PepEv_35273_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2442 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36128_39_101"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2443 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-8" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2444 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="62" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2445 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.7328273E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2446 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.0982413" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2447 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.3448276" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2448 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.3448276" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2449 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2450 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2451 <userParam value="0.014285714" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2452 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2453 <userParam value="0.014285714" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2454 <userParam value="280.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2455 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2456 <userParam value="15.868396" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2457 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2458 <userParam value="15.868396" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2459 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2460 <userParam value="15.868396" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2461 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2462 <userParam value="15.868396" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2463 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2464 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2465 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2466 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1202 experiment=2" id="SIR_27">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2467 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep40" calculatedMassToCharge="489.242919921875" experimentalMassToCharge="489.23614501953125" chargeState="2" id="SII_27_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2468 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84175_40_544"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2469 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84987_40_540"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2470 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85754_40_495"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2471 <PeptideEvidenceRef peptideEvidence_ref="PepEv_93840_40_355"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2472 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="11" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2473 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="80" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2474 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.9666237E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2475 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.1671884" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2476 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.36666667" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2477 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.36666667" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2478 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2479 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2480 <userParam value="0.19655667" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2481 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2482 <userParam value="0.19655667" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2483 <userParam value="697.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2484 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2485 <userParam value="11.535825" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2486 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2487 <userParam value="11.535825" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2488 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2489 <userParam value="-11.535825" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2490 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2491 <userParam value="-11.535825" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2492 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2493 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2494 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2495 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1217 experiment=2" id="SIR_69">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2496 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep41" calculatedMassToCharge="501.76434326171875" experimentalMassToCharge="501.7442626953125" chargeState="2" id="SII_69_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2497 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12182_41_2678"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2498 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="15" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2499 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="93" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2500 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.97232E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2501 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.1694295" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2502 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.36666667" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2503 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.36666667" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2504 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2505 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2506 <userParam value="0.024824357" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2507 <userParam value="9.3676813E-4" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2508 <userParam value="0.023887588" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2509 <userParam value="2135.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2510 <userParam value="4" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2511 <userParam value="10.915121" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2512 <userParam value="6.154217" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2513 <userParam value="10.915121" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2514 <userParam value="6.154217" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2515 <userParam value="-1.1197674" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2516 <userParam value="12.4804" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2517 <userParam value="-1.1197674" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2518 <userParam value="12.4804" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2519 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2520 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2521 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1221 experiment=3" id="SIR_82">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2522 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep42" calculatedMassToCharge="685.3006591796875" experimentalMassToCharge="684.796142578125" chargeState="2" id="SII_82_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2523 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100097_42_186"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2524 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2525 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="85" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2526 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.9845407E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2527 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.1850716" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2528 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2529 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2530 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2531 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2532 <userParam value="0.0037313432" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2533 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2534 <userParam value="0.0037313432" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2535 <userParam value="268.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2536 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2537 <userParam value="18.267769" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2538 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2539 <userParam value="18.267769" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2540 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2541 <userParam value="18.267769" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2542 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2543 <userParam value="18.267769" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2544 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2545 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2546 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2547 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1192 experiment=2" id="SIR_10">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2548 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep43" calculatedMassToCharge="443.7244873046875" experimentalMassToCharge="443.2386779785156" chargeState="2" id="SII_10_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2549 <PeptideEvidenceRef peptideEvidence_ref="PepEv_102691_43_95"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2550 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="28" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2551 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="75" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2552 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.141126E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2553 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.222589" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2554 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2555 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2556 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2557 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2558 <userParam value="0.026150627" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2559 <userParam value="0.009414226" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2560 <userParam value="0.016736401" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2561 <userParam value="956.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2562 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2563 <userParam value="13.604988" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2564 <userParam value="6.3825626" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2565 <userParam value="13.604988" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2566 <userParam value="6.3825626" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2567 <userParam value="13.604988" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2568 <userParam value="6.3825626" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2569 <userParam value="13.604988" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2570 <userParam value="6.3825626" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2571 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2572 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2573 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1225 experiment=2" id="SIR_87">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2574 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep44" calculatedMassToCharge="550.7153930664062" experimentalMassToCharge="550.7279052734375" chargeState="2" id="SII_87_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2575 <PeptideEvidenceRef peptideEvidence_ref="PepEv_71711_44_6232"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2576 <PeptideEvidenceRef peptideEvidence_ref="PepEv_77212_44_4122"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2577 <PeptideEvidenceRef peptideEvidence_ref="PepEv_98610_44_4122"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2578 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2579 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="50" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2580 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.1650878E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2581 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.2452722" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2582 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2583 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2584 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2585 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2586 <userParam value="0.004640371" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2587 <userParam value="0.0023201855" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2588 <userParam value="0.0023201855" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2589 <userParam value="431.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2590 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2591 <userParam value="3.6400995" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2592 <userParam value="0.37962416" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2593 <userParam value="3.6400995" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2594 <userParam value="0.37962416" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2595 <userParam value="3.6400995" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2596 <userParam value="0.37962416" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2597 <userParam value="3.6400995" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2598 <userParam value="0.37962416" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2599 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2600 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2601 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1212 experiment=2" id="SIR_50">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2602 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep45" calculatedMassToCharge="652.3156127929688" experimentalMassToCharge="653.3101806640625" chargeState="2" id="SII_50_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2603 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10931_45_1427"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2604 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18540_45_1425"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2605 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39862_45_1349"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2606 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-7" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2607 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="87" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2608 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.3447755E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2609 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.3222902" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2610 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2611 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2612 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2613 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2614 <userParam value="0.0074766357" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2615 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2616 <userParam value="0.0074766357" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2617 <userParam value="535.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2618 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2619 <userParam value="5.5999055" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2620 <userParam value="3.8148608" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2621 <userParam value="5.5999055" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2622 <userParam value="3.8148608" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2623 <userParam value="3.8148606" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2624 <userParam value="5.5999055" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2625 <userParam value="3.8148606" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2626 <userParam value="5.5999055" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2627 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2628 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2629 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1212 experiment=3" id="SIR_51">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2630 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep46" calculatedMassToCharge="576.75439453125" experimentalMassToCharge="577.2473754882812" chargeState="2" id="SII_51_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2631 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9583_46_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2632 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17194_46_79"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2633 <PeptideEvidenceRef peptideEvidence_ref="PepEv_38516_46_3"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2634 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2635 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="101" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2636 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.6661542E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2637 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.4493408" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2638 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2639 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2640 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2641 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2642 <userParam value="0.015970515" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2643 <userParam value="0.0036855037" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2644 <userParam value="0.012285012" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2645 <userParam value="814.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2646 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2647 <userParam value="5.9627824" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2648 <userParam value="1.1751338" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2649 <userParam value="5.9627824" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2650 <userParam value="1.1751338" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2651 <userParam value="-5.9627824" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2652 <userParam value="1.1751338" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2653 <userParam value="-5.9627824" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2654 <userParam value="1.1751338" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2655 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2656 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2657 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1210 experiment=4" id="SIR_45">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2658 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep47" calculatedMassToCharge="547.2616577148438" experimentalMassToCharge="547.7760620117188" chargeState="2" id="SII_45_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2659 <PeptideEvidenceRef peptideEvidence_ref="PepEv_67474_47_1995"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2660 <PeptideEvidenceRef peptideEvidence_ref="PepEv_75015_47_1925"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2661 <PeptideEvidenceRef peptideEvidence_ref="PepEv_96413_47_1925"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2662 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-7" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2663 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="41" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2664 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.8811617E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2665 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.5270044" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2666 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2667 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2668 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2669 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2670 <userParam value="0.0057803467" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2671 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2672 <userParam value="0.0057803467" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2673 <userParam value="346.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2674 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2675 <userParam value="2.97555" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2676 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2677 <userParam value="2.97555" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2678 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2679 <userParam value="2.97555" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2680 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2681 <userParam value="2.97555" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2682 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2683 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2684 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2685 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1215 experiment=3" id="SIR_63">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2686 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep48" calculatedMassToCharge="612.7637329101562" experimentalMassToCharge="613.7810668945312" chargeState="2" id="SII_63_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2687 <PeptideEvidenceRef peptideEvidence_ref="PepEv_67204_48_1725"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2688 <PeptideEvidenceRef peptideEvidence_ref="PepEv_74745_48_1655"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2689 <PeptideEvidenceRef peptideEvidence_ref="PepEv_96143_48_1655"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2690 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2691 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="53" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2692 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.169693E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2693 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.6484048" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2694 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2695 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2696 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2697 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2698 <userParam value="0.0015847861" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2699 <userParam value="0.0015847861" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2700 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2701 <userParam value="631.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2702 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2703 <userParam value="9.747992" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2704 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2705 <userParam value="9.747992" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2706 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2707 <userParam value="-9.747992" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2708 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2709 <userParam value="-9.747992" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2710 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2711 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2712 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep49" calculatedMassToCharge="613.8005981445312" experimentalMassToCharge="613.7810668945312" chargeState="2" id="SII_63_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2713 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12725_49_3221"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2714 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2715 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="53" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2716 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.169693E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2717 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.6484048" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2718 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2719 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2720 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2721 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2722 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2723 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2724 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2725 <userParam value="631.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2726 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2727 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2728 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1204 experiment=2" id="SIR_31">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2729 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep50" calculatedMassToCharge="623.7503051757812" experimentalMassToCharge="623.2515258789062" chargeState="2" id="SII_31_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2730 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5735_50_1136"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2731 <PeptideEvidenceRef peptideEvidence_ref="PepEv_6933_50_1081"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2732 <PeptideEvidenceRef peptideEvidence_ref="PepEv_35055_50_1183"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2733 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2734 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="100" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2735 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.5576668E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2736 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.8017824" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2737 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2738 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2739 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2740 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2741 <userParam value="0.0019986676" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2742 <userParam value="0.0019986676" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2743 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2744 <userParam value="1501.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2745 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2746 <userParam value="15.753789" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2747 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2748 <userParam value="15.753789" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2749 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2750 <userParam value="-15.753789" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2751 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2752 <userParam value="-15.753789" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2753 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2754 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2755 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2756 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1228 experiment=2" id="SIR_88">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2757 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep51" calculatedMassToCharge="501.21978759765625" experimentalMassToCharge="500.6953125" chargeState="2" id="SII_88_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2758 <PeptideEvidenceRef peptideEvidence_ref="PepEv_69817_51_4338"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2759 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="1" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2760 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="54" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2761 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.9275088E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2762 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.9287255" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2763 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2764 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2765 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2766 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2767 <userParam value="0.005524862" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2768 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2769 <userParam value="0.005524862" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2770 <userParam value="543.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2771 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2772 <userParam value="17.897404" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2773 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2774 <userParam value="17.897404" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2775 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2776 <userParam value="-17.897404" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2777 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2778 <userParam value="-17.897404" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2779 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2780 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2781 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2782 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1215 experiment=2" id="SIR_62">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2783 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep52" calculatedMassToCharge="606.2938232421875" experimentalMassToCharge="605.810546875" chargeState="2" id="SII_62_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2784 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12353_52_2849"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2785 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2786 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="48" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2787 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.0541377E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2788 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.9980522" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2789 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2790 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2791 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2792 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2793 <userParam value="0.012345679" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2794 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2795 <userParam value="0.012345679" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2796 <userParam value="486.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2797 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2798 <userParam value="8.252068" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2799 <userParam value="2.5789" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2800 <userParam value="8.252068" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2801 <userParam value="2.5789" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2802 <userParam value="-8.252068" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2803 <userParam value="2.5789" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2804 <userParam value="-8.252068" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2805 <userParam value="2.5789" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2806 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2807 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2808 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1191 experiment=2" id="SIR_8">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2809 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep53" calculatedMassToCharge="436.2081604003906" experimentalMassToCharge="435.7113037109375" chargeState="2" id="SII_8_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2810 <PeptideEvidenceRef peptideEvidence_ref="PepEv_72145_53_6666"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2811 <PeptideEvidenceRef peptideEvidence_ref="PepEv_77646_53_4556"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2812 <PeptideEvidenceRef peptideEvidence_ref="PepEv_99044_53_4556"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2813 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="5" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2814 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="55" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2815 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.349366E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2816 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.0820801" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2817 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2818 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2819 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2820 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2821 <userParam value="0.012376238" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2822 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2823 <userParam value="0.012376238" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2824 <userParam value="404.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2825 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2826 <userParam value="6.2136273" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2827 <userParam value="0.38628942" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2828 <userParam value="6.2136273" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2829 <userParam value="0.38628942" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2830 <userParam value="6.2136273" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2831 <userParam value="0.38628942" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2832 <userParam value="6.2136273" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2833 <userParam value="0.38628942" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2834 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2835 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2836 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1223 experiment=2" id="SIR_84">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2837 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep54" calculatedMassToCharge="610.784423828125" experimentalMassToCharge="610.7609252929688" chargeState="2" id="SII_84_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2838 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13770_54_4266"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2839 <PeptideEvidenceRef peptideEvidence_ref="PepEv_19339_54_2224"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2840 <PeptideEvidenceRef peptideEvidence_ref="PepEv_40661_54_2148"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2841 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2842 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="99" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2843 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.8937934E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2844 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.3299935" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2845 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2846 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2847 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2848 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2849 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2850 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2851 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2852 <userParam value="846.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2853 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2854 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2855 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1223 experiment=3" id="SIR_85">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2856 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep55" calculatedMassToCharge="478.26397705078125" experimentalMassToCharge="478.24365234375" chargeState="2" id="SII_85_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2857 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5629_55_1030"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2858 <PeptideEvidenceRef peptideEvidence_ref="PepEv_6827_55_975"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2859 <PeptideEvidenceRef peptideEvidence_ref="PepEv_34949_55_1077"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2860 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-16" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2861 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2862 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.987477E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2863 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.3670292" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2864 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2865 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2866 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2867 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2868 <userParam value="0.011538462" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2869 <userParam value="0.0076923077" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2870 <userParam value="0.0038461538" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2871 <userParam value="260.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2872 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2873 <userParam value="8.941049" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2874 <userParam value="2.0608199" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2875 <userParam value="8.941049" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2876 <userParam value="2.0608199" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2877 <userParam value="2.0608194" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2878 <userParam value="8.941049" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2879 <userParam value="2.0608194" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2880 <userParam value="8.941049" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2881 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2882 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2883 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1218 experiment=3" id="SIR_74">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2884 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep56" calculatedMassToCharge="471.7154846191406" experimentalMassToCharge="471.2165222167969" chargeState="2" id="SII_74_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2885 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10241_56_737"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2886 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17852_56_737"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2887 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39174_56_661"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2888 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2889 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="65" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2890 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.575449E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2891 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.5592961" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2892 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2893 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2894 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2895 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2896 <userParam value="0.08531746" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2897 <userParam value="0.003968254" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2898 <userParam value="0.08134921" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2899 <userParam value="504.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2900 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2901 <userParam value="17.129374" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2902 <userParam value="2.7590075" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2903 <userParam value="17.129374" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2904 <userParam value="2.7590075" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2905 <userParam value="8.30215" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2906 <userParam value="15.23489" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2907 <userParam value="8.30215" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2908 <userParam value="15.23489" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2909 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2910 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2911 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1210 experiment=3" id="SIR_44">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2912 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep57" calculatedMassToCharge="460.7218933105469" experimentalMassToCharge="461.7162170410156" chargeState="2" id="SII_44_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2913 <PeptideEvidenceRef peptideEvidence_ref="PepEv_71647_57_6168"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2914 <PeptideEvidenceRef peptideEvidence_ref="PepEv_77148_57_4058"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2915 <PeptideEvidenceRef peptideEvidence_ref="PepEv_98546_57_4058"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2916 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2917 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="59" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2918 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.0180446E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2919 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.747003" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2920 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2921 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2922 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2923 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2924 <userParam value="0.0088495575" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2925 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2926 <userParam value="0.0088495575" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2927 <userParam value="452.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2928 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2929 <userParam value="6.223279" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2930 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2931 <userParam value="6.223279" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2932 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2933 <userParam value="-6.223279" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2934 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2935 <userParam value="-6.223279" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2936 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2937 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2938 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2939 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1203 experiment=2" id="SIR_29">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2940 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep58" calculatedMassToCharge="533.76025390625" experimentalMassToCharge="533.7421264648438" chargeState="2" id="SII_29_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2941 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9310_58_550"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2942 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2943 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="87" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2944 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.0701535E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2945 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.7673995" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2946 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2947 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2948 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2949 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2950 <userParam value="0.0058430717" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2951 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2952 <userParam value="0.0058430717" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2953 <userParam value="1198.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2954 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2955 <userParam value="9.941886" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2956 <userParam value="7.009462" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2957 <userParam value="9.941886" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2958 <userParam value="7.009462" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2959 <userParam value="-7.0094614" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2960 <userParam value="9.941886" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2961 <userParam value="-7.0094614" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2962 <userParam value="9.941886" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2963 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2964 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2965 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1234 experiment=2" id="SIR_97">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2966 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep59" calculatedMassToCharge="515.5863037109375" experimentalMassToCharge="516.2442626953125" chargeState="3" id="SII_97_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2967 <PeptideEvidenceRef peptideEvidence_ref="PepEv_93034_59_177"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2968 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2969 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="65" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2970 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.1961076E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2971 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.8806736" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2972 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2973 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2974 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2975 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2976 <userParam value="0.002004008" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2977 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2978 <userParam value="0.002004008" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2979 <userParam value="499.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2980 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2981 <userParam value="13.1151285" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2982 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2983 <userParam value="13.1151285" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2984 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2985 <userParam value="-13.1151285" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2986 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2987 <userParam value="-13.1151285" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2988 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2989 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2990 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2991 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1204 experiment=4" id="SIR_33">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2992 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep60" calculatedMassToCharge="463.87017822265625" experimentalMassToCharge="464.1875305175781" chargeState="3" id="SII_33_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2993 <PeptideEvidenceRef peptideEvidence_ref="PepEv_23963_60_89"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2994 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46428_60_89"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2995 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-15" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2996 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="55" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2997 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.273051E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2998 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.8752553" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
2999 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3000 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3001 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3002 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3003 <userParam value="0.027950311" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3004 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3005 <userParam value="0.027950311" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3006 <userParam value="322.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3007 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3008 <userParam value="9.153981" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3009 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3010 <userParam value="9.153981" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3011 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3012 <userParam value="9.153981" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3013 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3014 <userParam value="9.153981" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3015 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3016 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3017 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3018 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1281 experiment=2" id="SIR_103">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3019 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep61" calculatedMassToCharge="591.253173828125" experimentalMassToCharge="591.745361328125" chargeState="2" id="SII_103_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3020 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10408_61_904"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3021 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3022 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="70" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3023 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.31142E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3024 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.8904235" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3025 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3026 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3027 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3028 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3029 <userParam value="0.008756568" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3030 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3031 <userParam value="0.008756568" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3032 <userParam value="571.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3033 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3034 <userParam value="12.859994" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3035 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3036 <userParam value="12.859994" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3037 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3038 <userParam value="12.859994" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3039 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3040 <userParam value="12.859994" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3041 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3042 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3043 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3044 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1235 experiment=2" id="SIR_98">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3045 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep62" calculatedMassToCharge="667.3578491210938" experimentalMassToCharge="667.8607788085938" chargeState="2" id="SII_98_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3046 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56260_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3047 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56877_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3048 <PeptideEvidenceRef peptideEvidence_ref="PepEv_57494_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3049 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58111_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3050 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58727_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3051 <PeptideEvidenceRef peptideEvidence_ref="PepEv_59324_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3052 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80016_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3053 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80633_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3054 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81250_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3055 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81867_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3056 <PeptideEvidenceRef peptideEvidence_ref="PepEv_82483_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3057 <PeptideEvidenceRef peptideEvidence_ref="PepEv_83080_62_38"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3058 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-16" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3059 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="67" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3060 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.4321615E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3061 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.9510882" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3062 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3063 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3064 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3065 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3066 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3067 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3068 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3069 <userParam value="716.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3070 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3071 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3072 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1209 experiment=5" id="SIR_42">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3073 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep63" calculatedMassToCharge="404.5450744628906" experimentalMassToCharge="404.19219970703125" chargeState="3" id="SII_42_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3074 <PeptideEvidenceRef peptideEvidence_ref="PepEv_70208_63_4729"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3075 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3076 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="53" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3077 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.5708376E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3078 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="2.9929793" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3079 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3080 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3081 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3082 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3083 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3084 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3085 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3086 <userParam value="390.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3087 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3088 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3089 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1213 experiment=3" id="SIR_55">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3090 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep64" calculatedMassToCharge="546.6178588867188" experimentalMassToCharge="547.2749633789062" chargeState="3" id="SII_55_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3091 <PeptideEvidenceRef peptideEvidence_ref="PepEv_27835_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3092 <PeptideEvidenceRef peptideEvidence_ref="PepEv_28651_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3093 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29463_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3094 <PeptideEvidenceRef peptideEvidence_ref="PepEv_37689_64_179"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3095 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3096 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="75" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3097 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.804321E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3098 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.1241477" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3099 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3100 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3101 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3102 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3103 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3104 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3105 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3106 <userParam value="964.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3107 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3108 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3109 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1199 experiment=2" id="SIR_19">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3110 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep65" calculatedMassToCharge="607.27392578125" experimentalMassToCharge="608.2568969726562" chargeState="2" id="SII_19_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3111 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49806_65_329"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3112 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="0" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3113 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="86" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3114 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.914526E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3115 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.1288495" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3116 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3117 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3118 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3119 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3120 <userParam value="0.004484305" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3121 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3122 <userParam value="0.004484305" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3123 <userParam value="446.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3124 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3125 <userParam value="9.900939" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3126 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3127 <userParam value="9.900939" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3128 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3129 <userParam value="-9.900939" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3130 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3131 <userParam value="-9.900939" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3132 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3133 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3134 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3135 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1196 experiment=2" id="SIR_15">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3136 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep66" calculatedMassToCharge="409.1913757324219" experimentalMassToCharge="409.1874694824219" chargeState="3" id="SII_15_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3137 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9894_66_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3138 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17505_66_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3139 <PeptideEvidenceRef peptideEvidence_ref="PepEv_38827_66_314"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3140 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="0" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3141 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="62" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3142 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.093701E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3143 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.1843858" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3144 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3145 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3146 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3147 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3148 <userParam value="0.019354839" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3149 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3150 <userParam value="0.019354839" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3151 <userParam value="465.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3152 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3153 <userParam value="18.674824" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3154 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3155 <userParam value="18.674824" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3156 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3157 <userParam value="-18.674824" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3158 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3159 <userParam value="-18.674824" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3160 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3161 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3162 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep67" calculatedMassToCharge="408.8633728027344" experimentalMassToCharge="409.1874694824219" chargeState="3" id="SII_15_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3163 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9894_67_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3164 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17505_67_390"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3165 <PeptideEvidenceRef peptideEvidence_ref="PepEv_38827_67_314"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3166 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="0" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3167 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="62" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3168 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.093701E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3169 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.1843858" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3170 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3171 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3172 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3173 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3174 <userParam value="0.019354839" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3175 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3176 <userParam value="0.019354839" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3177 <userParam value="465.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3178 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3179 <userParam value="18.674824" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3180 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3181 <userParam value="18.674824" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3182 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3183 <userParam value="-18.674824" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3184 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3185 <userParam value="-18.674824" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3186 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3187 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3188 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3189 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1212 experiment=5" id="SIR_53">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3190 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep68" calculatedMassToCharge="584.6590576171875" experimentalMassToCharge="584.6378784179688" chargeState="3" id="SII_53_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3191 <PeptideEvidenceRef peptideEvidence_ref="PepEv_104505_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3192 <PeptideEvidenceRef peptideEvidence_ref="PepEv_107379_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3193 <PeptideEvidenceRef peptideEvidence_ref="PepEv_108511_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3194 <PeptideEvidenceRef peptideEvidence_ref="PepEv_109611_68_153"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3195 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-5" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3196 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="54" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3197 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.131304E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3198 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.267727" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3199 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3200 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3201 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3202 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3203 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3204 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3205 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3206 <userParam value="496.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3207 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3208 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3209 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1216 experiment=3" id="SIR_66">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3210 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep69" calculatedMassToCharge="501.21978759765625" experimentalMassToCharge="501.203125" chargeState="2" id="SII_66_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3211 <PeptideEvidenceRef peptideEvidence_ref="PepEv_12771_69_3267"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3212 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-1" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3213 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3214 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.421752E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3215 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.2964423" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3216 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3217 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3218 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3219 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3220 <userParam value="0.040413536" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3221 <userParam value="0.02349624" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3222 <userParam value="0.016917294" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3223 <userParam value="1064.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3224 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3225 <userParam value="8.521464" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3226 <userParam value="5.4312863" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3227 <userParam value="8.521464" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3228 <userParam value="5.4312863" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3229 <userParam value="-6.530916" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3230 <userParam value="7.711119" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3231 <userParam value="-6.530916" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3232 <userParam value="7.711119" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3233 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3234 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3235 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1216 experiment=5" id="SIR_68">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3236 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep70" calculatedMassToCharge="576.306396484375" experimentalMassToCharge="575.8047485351562" chargeState="2" id="SII_68_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3237 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15192_70_5688"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3238 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20761_70_3646"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3239 <PeptideEvidenceRef peptideEvidence_ref="PepEv_42083_70_3570"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3240 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3241 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="72" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3242 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.631262E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3243 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.4121969" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3244 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3245 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3246 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3247 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3248 <userParam value="0.048349604" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3249 <userParam value="0.0027894003" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3250 <userParam value="0.045560203" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3251 <userParam value="2151.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3252 <userParam value="5" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3253 <userParam value="7.546492" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3254 <userParam value="6.3771687" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3255 <userParam value="7.546492" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3256 <userParam value="6.3771687" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3257 <userParam value="-4.5396676" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3258 <userParam value="8.775491" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3259 <userParam value="-4.5396676" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3260 <userParam value="8.775491" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3261 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3262 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3263 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1214 experiment=4" id="SIR_60">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3264 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep71" calculatedMassToCharge="546.2095947265625" experimentalMassToCharge="545.8875732421875" chargeState="3" id="SII_60_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3265 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100324_71_413"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3266 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3267 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="120" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3268 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.0870795E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3269 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.6376488" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3270 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3271 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3272 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3273 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3274 <userParam value="0.05524079" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3275 <userParam value="0.0014164306" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3276 <userParam value="0.05382436" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3277 <userParam value="2824.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3278 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3279 <userParam value="7.5639725" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3280 <userParam value="3.0545332" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3281 <userParam value="7.5639725" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3282 <userParam value="3.0545332" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3283 <userParam value="3.0975077" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3284 <userParam value="7.546476" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3285 <userParam value="3.0975077" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3286 <userParam value="7.546476" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3287 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3288 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3289 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1200 experiment=3" id="SIR_22">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3290 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep72" calculatedMassToCharge="450.2125549316406" experimentalMassToCharge="450.2027587890625" chargeState="2" id="SII_22_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3291 <PeptideEvidenceRef peptideEvidence_ref="PepEv_66556_72_1077"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3292 <PeptideEvidenceRef peptideEvidence_ref="PepEv_74097_72_1007"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3293 <PeptideEvidenceRef peptideEvidence_ref="PepEv_95495_72_1007"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3294 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3295 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="66" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3296 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.156562E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3297 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.563917" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3298 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3299 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3300 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3301 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3302 <userParam value="0.025139665" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3303 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3304 <userParam value="0.025139665" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3305 <userParam value="716.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3306 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3307 <userParam value="7.719161" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3308 <userParam value="5.476213" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3309 <userParam value="7.719161" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3310 <userParam value="5.476213" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3311 <userParam value="5.4762135" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3312 <userParam value="7.7191606" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3313 <userParam value="5.4762135" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3314 <userParam value="7.7191606" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3315 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3316 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3317 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1187 experiment=2" id="SIR_4">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3318 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep73" calculatedMassToCharge="440.695068359375" experimentalMassToCharge="441.6909484863281" chargeState="2" id="SII_4_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3319 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10510_73_1006"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3320 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18119_73_1004"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3321 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39441_73_928"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3322 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-2" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3323 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="76" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3324 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.37367E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3325 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.6690419" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3326 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3327 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3328 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3329 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3330 <userParam value="0.0040816325" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3331 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3332 <userParam value="0.0040816325" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3333 <userParam value="490.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3334 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3335 <userParam value="11.681737" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3336 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3337 <userParam value="11.681737" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3338 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3339 <userParam value="-11.681737" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3340 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3341 <userParam value="-11.681737" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3342 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3343 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3344 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3345 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1189 experiment=2" id="SIR_7">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3346 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep74" calculatedMassToCharge="410.1901550292969" experimentalMassToCharge="409.6888122558594" chargeState="2" id="SII_7_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3347 <PeptideEvidenceRef peptideEvidence_ref="PepEv_16802_74_7298"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3348 <PeptideEvidenceRef peptideEvidence_ref="PepEv_22367_74_5252"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3349 <PeptideEvidenceRef peptideEvidence_ref="PepEv_43689_74_5176"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3350 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3351 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="75" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3352 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.405879E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3353 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.6609564" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3354 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3355 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3356 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3357 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3358 <userParam value="0.01178782" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3359 <userParam value="0.003929273" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3360 <userParam value="0.007858546" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3361 <userParam value="509.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3362 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3363 <userParam value="9.419321" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3364 <userParam value="1.6503386" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3365 <userParam value="9.419321" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3366 <userParam value="1.6503386" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3367 <userParam value="-9.419321" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3368 <userParam value="1.6503386" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3369 <userParam value="-9.419321" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3370 <userParam value="1.6503386" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3371 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3372 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3373 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1217 experiment=3" id="SIR_70">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3374 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep75" calculatedMassToCharge="533.2728271484375" experimentalMassToCharge="533.2589111328125" chargeState="3" id="SII_70_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3375 <PeptideEvidenceRef peptideEvidence_ref="PepEv_27790_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3376 <PeptideEvidenceRef peptideEvidence_ref="PepEv_28606_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3377 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29418_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3378 <PeptideEvidenceRef peptideEvidence_ref="PepEv_37644_75_134"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3379 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3380 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="88" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3381 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.691001E-5" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3382 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="3.8794043" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3383 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3384 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3385 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3386 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3387 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3388 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3389 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3390 <userParam value="2692.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3391 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3392 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3393 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1216 experiment=2" id="SIR_65">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3394 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep76" calculatedMassToCharge="464.21002197265625" experimentalMassToCharge="464.21527099609375" chargeState="2" id="SII_65_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3395 <PeptideEvidenceRef peptideEvidence_ref="PepEv_104924_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3396 <PeptideEvidenceRef peptideEvidence_ref="PepEv_107798_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3397 <PeptideEvidenceRef peptideEvidence_ref="PepEv_108930_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3398 <PeptideEvidenceRef peptideEvidence_ref="PepEv_110030_76_572"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3399 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3400 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="69" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3401 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.0621781E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3402 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.1342096" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3403 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3404 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3405 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3406 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3407 <userParam value="0.25414366" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3408 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3409 <userParam value="0.25414366" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3410 <userParam value="905.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3411 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3412 <userParam value="12.370739" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3413 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3414 <userParam value="12.370739" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3415 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3416 <userParam value="-12.370739" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3417 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3418 <userParam value="-12.370739" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3419 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3420 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3421 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3422 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1283 experiment=2" id="SIR_104">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3423 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep77" calculatedMassToCharge="591.6441040039062" experimentalMassToCharge="591.3255615234375" chargeState="3" id="SII_104_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3424 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49044_77_667"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3425 <PeptideEvidenceRef peptideEvidence_ref="PepEv_51950_77_699"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3426 <PeptideEvidenceRef peptideEvidence_ref="PepEv_53050_77_667"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3427 <PeptideEvidenceRef peptideEvidence_ref="PepEv_54150_77_667"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3428 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3429 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="91" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3430 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.0664459E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3431 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.301723" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3432 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3433 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3434 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3435 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3436 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3437 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3438 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3439 <userParam value="1072.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3440 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3441 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3442 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1221 experiment=2" id="SIR_81">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3443 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep78" calculatedMassToCharge="411.66851806640625" experimentalMassToCharge="412.68389892578125" chargeState="2" id="SII_81_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3444 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15475_78_5971"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3445 <PeptideEvidenceRef peptideEvidence_ref="PepEv_21044_78_3929"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3446 <PeptideEvidenceRef peptideEvidence_ref="PepEv_42366_78_3853"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3447 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-10" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3448 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="48" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3449 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.1214652E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3450 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.3373785" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3451 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3452 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3453 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3454 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3455 <userParam value="0.002988048" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3456 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3457 <userParam value="0.002988048" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3458 <userParam value="1004.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3459 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3460 <userParam value="5.827341" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3461 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3462 <userParam value="5.827341" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3463 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3464 <userParam value="5.827341" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3465 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3466 <userParam value="5.827341" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3467 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3468 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3469 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3470 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1216 experiment=4" id="SIR_67">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3471 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep79" calculatedMassToCharge="404.65509033203125" experimentalMassToCharge="405.6540222167969" chargeState="2" id="SII_67_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3472 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10642_79_1138"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3473 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18251_79_1136"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3474 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39573_79_1060"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3475 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3476 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="29" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3477 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.14157505E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3478 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.4151554" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3479 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3480 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3481 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3482 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3483 <userParam value="0.020926757" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3484 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3485 <userParam value="0.020926757" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3486 <userParam value="669.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3487 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3488 <userParam value="11.103635" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3489 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3490 <userParam value="11.103635" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3491 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3492 <userParam value="-11.103635" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3493 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3494 <userParam value="-11.103635" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3495 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3496 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3497 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3498 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1219 experiment=2" id="SIR_77">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3499 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep80" calculatedMassToCharge="486.9255676269531" experimentalMassToCharge="487.2433166503906" chargeState="3" id="SII_77_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3500 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10444_80_940"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3501 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18053_80_938"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3502 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39375_80_862"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3503 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3504 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="80" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3505 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.1519219E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3506 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.6112585" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3507 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3508 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3509 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3510 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3511 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3512 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3513 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3514 <userParam value="2669.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3515 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3516 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep81" calculatedMassToCharge="487.24517822265625" experimentalMassToCharge="487.2433166503906" chargeState="3" id="SII_77_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3517 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5600_81_1001"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3518 <PeptideEvidenceRef peptideEvidence_ref="PepEv_6798_81_946"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3519 <PeptideEvidenceRef peptideEvidence_ref="PepEv_34920_81_1048"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3520 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-3" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3521 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="80" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3522 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.1519219E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3523 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.593058" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3524 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3525 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3526 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3527 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3528 <userParam value="7.493443E-4" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3529 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3530 <userParam value="7.493443E-4" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3531 <userParam value="2669.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3532 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3533 <userParam value="9.744582" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3534 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3535 <userParam value="9.744582" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3536 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3537 <userParam value="9.744582" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3538 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3539 <userParam value="9.744582" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3540 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3541 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3542 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3543 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1191 experiment=3" id="SIR_9">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3544 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep82" calculatedMassToCharge="399.6705322265625" experimentalMassToCharge="400.6839294433594" chargeState="2" id="SII_9_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3545 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13782_82_4278"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3546 <PeptideEvidenceRef peptideEvidence_ref="PepEv_19351_82_2236"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3547 <PeptideEvidenceRef peptideEvidence_ref="PepEv_40673_82_2160"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3548 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-9" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3549 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="31" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3550 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.1933673E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3551 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.6154675" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3552 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3553 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3554 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3555 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3556 <userParam value="0.006651885" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3557 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3558 <userParam value="0.006651885" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3559 <userParam value="451.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3560 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3561 <userParam value="5.6731687" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3562 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3563 <userParam value="5.6731687" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3564 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3565 <userParam value="-5.6731687" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3566 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3567 <userParam value="-5.6731687" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3568 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3569 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3570 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3571 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1214 experiment=5" id="SIR_61">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3572 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep83" calculatedMassToCharge="519.0090942382812" experimentalMassToCharge="519.6590576171875" chargeState="3" id="SII_61_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3573 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49493_83_16"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3574 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-4" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3575 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="56" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3576 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.1969256E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3577 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.791413" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3578 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3579 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3580 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3581 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3582 <userParam value="0.011034483" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3583 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3584 <userParam value="0.011034483" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3585 <userParam value="725.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3586 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3587 <userParam value="5.827341" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3588 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3589 <userParam value="5.827341" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3590 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3591 <userParam value="5.827341" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3592 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3593 <userParam value="5.827341" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3594 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3595 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3596 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3597 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1192 experiment=3" id="SIR_11">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3598 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep84" calculatedMassToCharge="433.7054443359375" experimentalMassToCharge="433.1874694824219" chargeState="2" id="SII_11_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3599 <PeptideEvidenceRef peptideEvidence_ref="PepEv_28430_84_774"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3600 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-10" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3601 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="41" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3602 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.2215621E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3603 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.754564" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3604 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3605 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3606 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3607 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3608 <userParam value="0.0075376886" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3609 <userParam value="0.0075376886" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3610 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3611 <userParam value="796.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3612 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3613 <userParam value="18.588139" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3614 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3615 <userParam value="18.588139" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3616 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3617 <userParam value="-18.588139" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3618 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3619 <userParam value="-18.588139" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3620 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3621 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3622 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep85" calculatedMassToCharge="433.7054443359375" experimentalMassToCharge="433.1874694824219" chargeState="2" id="SII_11_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3623 <PeptideEvidenceRef peptideEvidence_ref="PepEv_83668_85_37"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3624 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-10" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3625 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="41" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3626 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.2215621E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3627 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.754564" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3628 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3629 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3630 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3631 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3632 <userParam value="0.028894473" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3633 <userParam value="0.0050251256" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3634 <userParam value="0.023869347" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3635 <userParam value="796.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3636 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3637 <userParam value="4.8137474" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3638 <userParam value="1.9105811" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3639 <userParam value="4.8137474" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3640 <userParam value="1.9105811" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3641 <userParam value="0.09484116" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3642 <userParam value="5.1781745" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3643 <userParam value="0.09484116" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3644 <userParam value="5.1781745" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3645 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3646 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3647 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1230 experiment=2" id="SIR_94">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3648 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep86" calculatedMassToCharge="813.3939208984375" experimentalMassToCharge="814.3682250976562" chargeState="2" id="SII_94_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3649 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49512_86_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3650 <PeptideEvidenceRef peptideEvidence_ref="PepEv_54618_86_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3651 <PeptideEvidenceRef peptideEvidence_ref="PepEv_55633_86_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3652 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3653 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="118" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3654 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.2269324E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3655 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.911533" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3656 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3657 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3658 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3659 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3660 <userParam value="0.010810811" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3661 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3662 <userParam value="0.010810811" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3663 <userParam value="185.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3664 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3665 <userParam value="3.2328408" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3666 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3667 <userParam value="3.2328408" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3668 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3669 <userParam value="3.2328408" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3670 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3671 <userParam value="3.2328408" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3672 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3673 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3674 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep87" calculatedMassToCharge="813.3939208984375" experimentalMassToCharge="814.3682250976562" chargeState="2" id="SII_94_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3675 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49512_87_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3676 <PeptideEvidenceRef peptideEvidence_ref="PepEv_54618_87_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3677 <PeptideEvidenceRef peptideEvidence_ref="PepEv_55633_87_35"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3678 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3679 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="118" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3680 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.2269324E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3681 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="4.911533" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3682 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3683 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3684 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3685 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3686 <userParam value="0.010810811" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3687 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3688 <userParam value="0.010810811" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3689 <userParam value="185.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3690 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3691 <userParam value="3.2328408" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3692 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3693 <userParam value="3.2328408" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3694 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3695 <userParam value="3.2328408" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3696 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3697 <userParam value="3.2328408" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3698 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3699 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3700 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3701 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1580 experiment=2" id="SIR_106">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3702 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep88" calculatedMassToCharge="532.9328002929688" experimentalMassToCharge="533.2622680664062" chargeState="3" id="SII_106_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3703 <PeptideEvidenceRef peptideEvidence_ref="PepEv_50548_88_694"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3704 <PeptideEvidenceRef peptideEvidence_ref="PepEv_51225_88_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3705 <PeptideEvidenceRef peptideEvidence_ref="PepEv_55572_88_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3706 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-24" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3707 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="37" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3708 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.270169E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3709 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="5.064545" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3710 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3711 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3712 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3713 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3714 <userParam value="0.007782101" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3715 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3716 <userParam value="0.007782101" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3717 <userParam value="257.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3718 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3719 <userParam value="13.693853" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3720 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3721 <userParam value="13.693853" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3722 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3723 <userParam value="-13.693853" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3724 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3725 <userParam value="-13.693853" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3726 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3727 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3728 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep89" calculatedMassToCharge="533.2608642578125" experimentalMassToCharge="533.2622680664062" chargeState="3" id="SII_106_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3729 <PeptideEvidenceRef peptideEvidence_ref="PepEv_50548_89_694"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3730 <PeptideEvidenceRef peptideEvidence_ref="PepEv_51225_89_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3731 <PeptideEvidenceRef peptideEvidence_ref="PepEv_55572_89_651"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3732 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-24" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3733 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="37" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3734 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.270169E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3735 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="5.064545" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3736 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3737 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3738 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3739 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3740 <userParam value="0.007782101" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3741 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3742 <userParam value="0.007782101" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3743 <userParam value="257.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3744 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3745 <userParam value="13.693853" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3746 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3747 <userParam value="13.693853" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3748 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3749 <userParam value="-13.693853" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3750 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3751 <userParam value="-13.693853" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3752 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3753 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3754 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3755 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1199 experiment=3" id="SIR_20">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3756 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep90" calculatedMassToCharge="494.86822509765625" experimentalMassToCharge="495.1852722167969" chargeState="3" id="SII_20_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3757 <PeptideEvidenceRef peptideEvidence_ref="PepEv_70944_90_5465"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3758 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3759 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="59" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3760 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.295693E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3761 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="5.186788" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3762 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3763 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3764 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3765 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3766 <userParam value="0.022113021" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3767 <userParam value="0.0073710075" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3768 <userParam value="0.014742015" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3769 <userParam value="407.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3770 <userParam value="4" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3771 <userParam value="9.055926" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3772 <userParam value="6.2274666" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3773 <userParam value="9.055926" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3774 <userParam value="6.2274666" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3775 <userParam value="6.1609697" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3776 <userParam value="9.101296" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3777 <userParam value="6.1609697" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3778 <userParam value="9.101296" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3779 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3780 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3781 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1207 experiment=2" id="SIR_35">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3782 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep91" calculatedMassToCharge="539.2390747070312" experimentalMassToCharge="540.2457885742188" chargeState="2" id="SII_35_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3783 <PeptideEvidenceRef peptideEvidence_ref="PepEv_16789_91_7285"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3784 <PeptideEvidenceRef peptideEvidence_ref="PepEv_22354_91_5239"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3785 <PeptideEvidenceRef peptideEvidence_ref="PepEv_43676_91_5163"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3786 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-8" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3787 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="76" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3788 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.3309349E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3789 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="5.23643" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3790 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3791 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3792 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3793 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3794 <userParam value="0.006329114" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3795 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3796 <userParam value="0.006329114" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3797 <userParam value="790.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3798 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3799 <userParam value="3.8751917" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3800 <userParam value="0.50687075" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3801 <userParam value="3.8751917" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3802 <userParam value="0.50687075" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3803 <userParam value="-0.5068711" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3804 <userParam value="3.8751917" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3805 <userParam value="-0.5068711" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3806 <userParam value="3.8751917" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3807 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3808 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3809 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1218 experiment=5" id="SIR_76">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3810 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep92" calculatedMassToCharge="588.28125" experimentalMassToCharge="587.7717895507812" chargeState="2" id="SII_76_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3811 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47156_92_51"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3812 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-11" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3813 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="54" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3814 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.5491001E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3815 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="6.124058" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3816 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3817 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3818 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3819 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3820 <userParam value="0.0068965517" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3821 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3822 <userParam value="0.0068965517" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3823 <userParam value="290.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3824 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3825 <userParam value="6.283976" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3826 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3827 <userParam value="6.283976" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3828 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3829 <userParam value="-6.283976" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3830 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3831 <userParam value="-6.283976" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3832 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3833 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3834 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3835 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1228 experiment=3" id="SIR_89">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3836 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep93" calculatedMassToCharge="606.3043823242188" experimentalMassToCharge="606.2748413085938" chargeState="2" id="SII_89_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3837 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13361_93_3857"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3838 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18930_93_1815"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3839 <PeptideEvidenceRef peptideEvidence_ref="PepEv_40252_93_1739"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3840 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-19" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3841 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="36" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3842 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.7915445E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3843 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="7.082513" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3844 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3845 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3846 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3847 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3848 <userParam value="0.014880952" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3849 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3850 <userParam value="0.014880952" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3851 <userParam value="336.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3852 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3853 <userParam value="9.156302" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3854 <userParam value="3.0457404" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3855 <userParam value="9.156302" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3856 <userParam value="3.0457404" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3857 <userParam value="-3.045741" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3858 <userParam value="9.156302" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3859 <userParam value="-3.045741" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3860 <userParam value="9.156302" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3861 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3862 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep94" calculatedMassToCharge="605.2909545898438" experimentalMassToCharge="606.2748413085938" chargeState="2" id="SII_89_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3863 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10313_94_809"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3864 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17924_94_809"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3865 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39246_94_733"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3866 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-19" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3867 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="36" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3868 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.7915445E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3869 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="7.082513" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3870 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3871 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3872 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3873 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3874 <userParam value="0.005952381" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3875 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3876 <userParam value="0.005952381" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3877 <userParam value="336.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3878 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3879 <userParam value="12.202044" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3880 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3881 <userParam value="12.202044" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3882 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3883 <userParam value="-12.202044" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3884 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3885 <userParam value="-12.202044" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3886 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3887 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3888 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3889 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1211 experiment=2" id="SIR_46">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3890 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep95" calculatedMassToCharge="442.67803955078125" experimentalMassToCharge="442.1819763183594" chargeState="2" id="SII_46_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3891 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49104_95_727"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3892 <PeptideEvidenceRef peptideEvidence_ref="PepEv_52010_95_759"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3893 <PeptideEvidenceRef peptideEvidence_ref="PepEv_53110_95_727"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3894 <PeptideEvidenceRef peptideEvidence_ref="PepEv_54210_95_727"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3895 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-6" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3896 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="62" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3897 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.109445E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3898 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="8.25679" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3899 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.41791046" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3900 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.41791046" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3901 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3902 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3903 <userParam value="0.02329749" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3904 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3905 <userParam value="0.02329749" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3906 <userParam value="558.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3907 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3908 <userParam value="11.186464" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3909 <userParam value="5.5132957" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3910 <userParam value="11.186464" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3911 <userParam value="5.5132957" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3912 <userParam value="5.513296" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3913 <userParam value="11.186464" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3914 <userParam value="5.513296" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3915 <userParam value="11.186464" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3916 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3917 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3918 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1229 experiment=3" id="SIR_91">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3919 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep96" calculatedMassToCharge="709.8168334960938" experimentalMassToCharge="710.8026733398438" chargeState="2" id="SII_91_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3920 <PeptideEvidenceRef peptideEvidence_ref="PepEv_65903_96_424"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3921 <PeptideEvidenceRef peptideEvidence_ref="PepEv_73448_96_358"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3922 <PeptideEvidenceRef peptideEvidence_ref="PepEv_94846_96_358"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3923 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-21" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3924 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="59" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3925 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.1340894E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3926 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="8.473828" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3927 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4225352" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3928 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4225352" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3929 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3930 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3931 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3932 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3933 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3934 <userParam value="397.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3935 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3936 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3937 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1211 experiment=3" id="SIR_47">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3938 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep97" calculatedMassToCharge="506.8843688964844" experimentalMassToCharge="507.2287902832031" chargeState="3" id="SII_47_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3939 <PeptideEvidenceRef peptideEvidence_ref="PepEv_79881_97_32"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3940 <PeptideEvidenceRef peptideEvidence_ref="PepEv_102346_97_32"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3941 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-15" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3942 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="69" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3943 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.2398768E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3944 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="8.893879" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3945 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4225352" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3946 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4225352" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3947 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3948 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3949 <userParam value="0.16243654" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3950 <userParam value="0.14467005" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3951 <userParam value="0.017766498" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3952 <userParam value="394.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3953 <userParam value="3" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3954 <userParam value="7.3503246" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3955 <userParam value="1.4136821" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3956 <userParam value="7.3503246" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3957 <userParam value="1.4136821" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3958 <userParam value="-3.4654305" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3959 <userParam value="6.6344976" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3960 <userParam value="-3.4654305" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3961 <userParam value="6.6344976" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3962 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3963 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3964 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1202 experiment=3" id="SIR_28">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3965 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep98" calculatedMassToCharge="423.6850280761719" experimentalMassToCharge="423.6785888671875" chargeState="2" id="SII_28_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3966 <PeptideEvidenceRef peptideEvidence_ref="PepEv_43973_98_37"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3967 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3968 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="37" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3969 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.3718974E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3970 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.231899" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3971 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4225352" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3972 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4225352" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3973 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3974 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3975 <userParam value="0.030981068" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3976 <userParam value="0.020654045" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3977 <userParam value="0.0103270225" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3978 <userParam value="581.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3979 <userParam value="4" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3980 <userParam value="9.998632" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3981 <userParam value="6.0752316" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3982 <userParam value="9.998632" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3983 <userParam value="6.0752316" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3984 <userParam value="4.8675556" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3985 <userParam value="10.638985" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3986 <userParam value="4.8675556" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3987 <userParam value="10.638985" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3988 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3989 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3990 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1209 experiment=4" id="SIR_41">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3991 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep99" calculatedMassToCharge="480.68109130859375" experimentalMassToCharge="481.1990051269531" chargeState="2" id="SII_41_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3992 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9505_99_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3993 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17116_99_1"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3994 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-25" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3995 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="46" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3996 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.4030214E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3997 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.405906" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3998 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4225352" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
3999 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4225352" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4000 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4001 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4002 <userParam value="0.022514071" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4003 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4004 <userParam value="0.022514071" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4005 <userParam value="533.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4006 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4007 <userParam value="11.935877" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4008 <userParam value="4.67867" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4009 <userParam value="11.935877" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4010 <userParam value="4.67867" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4011 <userParam value="-4.678669" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4012 <userParam value="11.935877" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4013 <userParam value="-4.678669" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4014 <userParam value="11.935877" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4015 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4016 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4017 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1236 experiment=3" id="SIR_100">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4018 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep100" calculatedMassToCharge="673.7841186523438" experimentalMassToCharge="673.7861938476562" chargeState="2" id="SII_100_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4019 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15634_100_6130"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4020 <PeptideEvidenceRef peptideEvidence_ref="PepEv_21203_100_4088"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4021 <PeptideEvidenceRef peptideEvidence_ref="PepEv_42525_100_4012"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4022 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-24" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4023 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="56" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4024 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.4793434E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4025 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.801589" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4026 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4225352" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4027 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4225352" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4028 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4029 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4030 <userParam value="0.00954654" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4031 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4032 <userParam value="0.00954654" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4033 <userParam value="419.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4034 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4035 <userParam value="14.254218" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4036 <userParam value="2.1014464" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4037 <userParam value="14.254218" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4038 <userParam value="2.1014464" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4039 <userParam value="14.254218" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4040 <userParam value="2.1014464" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4041 <userParam value="14.254218" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4042 <userParam value="2.1014464" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4043 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4044 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4045 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1218 experiment=2" id="SIR_73">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4046 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep101" calculatedMassToCharge="576.795166015625" experimentalMassToCharge="577.770751953125" chargeState="2" id="SII_73_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4047 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9036_101_276"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4048 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4049 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="47" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4050 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.495432E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4051 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.8180275" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4052 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4225352" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4053 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4225352" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4054 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4055 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4056 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4057 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4058 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4059 <userParam value="939.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4060 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4061 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4062 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1229 experiment=2" id="SIR_90">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4063 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep4" calculatedMassToCharge="521.6927490234375" experimentalMassToCharge="522.6893920898438" chargeState="2" id="SII_90_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4064 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31280_4_188"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4065 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31993_4_132"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4066 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32679_4_105"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4067 <PeptideEvidenceRef peptideEvidence_ref="PepEv_47796_4_132"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4068 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4069 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="61" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4070 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.525293E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4071 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.884502" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4072 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.43055555" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4073 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4074 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4075 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4076 <userParam value="0.0024479805" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4077 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4078 <userParam value="0.0024479805" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4079 <userParam value="817.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4080 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4081 <userParam value="5.827341" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4082 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4083 <userParam value="5.827341" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4084 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4085 <userParam value="5.827341" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4086 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4087 <userParam value="5.827341" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4088 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4089 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4090 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep102" calculatedMassToCharge="522.7042846679688" experimentalMassToCharge="522.6893920898438" chargeState="2" id="SII_90_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4091 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56364_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4092 <PeptideEvidenceRef peptideEvidence_ref="PepEv_56981_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4093 <PeptideEvidenceRef peptideEvidence_ref="PepEv_57598_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4094 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58215_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4095 <PeptideEvidenceRef peptideEvidence_ref="PepEv_58831_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4096 <PeptideEvidenceRef peptideEvidence_ref="PepEv_59428_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4097 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80120_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4098 <PeptideEvidenceRef peptideEvidence_ref="PepEv_80737_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4099 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81354_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4100 <PeptideEvidenceRef peptideEvidence_ref="PepEv_81971_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4101 <PeptideEvidenceRef peptideEvidence_ref="PepEv_82587_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4102 <PeptideEvidenceRef peptideEvidence_ref="PepEv_83184_102_142"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4103 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-12" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4104 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="61" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4105 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.525293E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4106 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.884502" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4107 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.43055555" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4108 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.43661973" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4109 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4110 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4111 <userParam value="0.009791922" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4112 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4113 <userParam value="0.009791922" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4114 <userParam value="817.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4115 <userParam value="4" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4116 <userParam value="7.59602" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4117 <userParam value="4.6823134" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4118 <userParam value="7.59602" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4119 <userParam value="4.6823134" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4120 <userParam value="0.23482454" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4121 <userParam value="8.9201145" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4122 <userParam value="0.23482454" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4123 <userParam value="8.9201145" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4124 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4125 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4126 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1208 experiment=2" id="SIR_37">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4127 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep103" calculatedMassToCharge="620.2677612304688" experimentalMassToCharge="621.2553100585938" chargeState="2" id="SII_37_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4128 <PeptideEvidenceRef peptideEvidence_ref="PepEv_63616_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4129 <PeptideEvidenceRef peptideEvidence_ref="PepEv_64471_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4130 <PeptideEvidenceRef peptideEvidence_ref="PepEv_91738_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4131 <PeptideEvidenceRef peptideEvidence_ref="PepEv_92593_103_591"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4132 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-20" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4133 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="77" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4134 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.0799973E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4135 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="12.176153" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4136 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.44444445" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4137 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.45070422" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4138 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4139 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4140 <userParam value="0.004764173" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4141 <userParam value="0.0019056693" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4142 <userParam value="0.002858504" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4143 <userParam value="2099.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4144 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4145 <userParam value="12.791509" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4146 <userParam value="2.1117246" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4147 <userParam value="12.791509" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4148 <userParam value="2.1117246" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4149 <userParam value="-12.791509" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4150 <userParam value="2.1117246" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4151 <userParam value="-12.791509" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4152 <userParam value="2.1117246" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4153 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4154 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4155 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1200 experiment=4" id="SIR_23">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4156 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep104" calculatedMassToCharge="554.571533203125" experimentalMassToCharge="554.2100219726562" chargeState="3" id="SII_23_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4157 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100095_104_184"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4158 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-23" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4159 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="45" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4160 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.5071408E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4161 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="14.039435" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4162 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.45333335" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4163 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.45945945" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4164 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4165 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4166 <userParam value="0.017699115" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4167 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4168 <userParam value="0.017699115" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4169 <userParam value="113.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4170 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4171 <userParam value="17.906084" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4172 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4173 <userParam value="17.906084" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4174 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4175 <userParam value="-17.906084" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4176 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4177 <userParam value="-17.906084" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4178 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4179 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4180 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4181 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1183 experiment=2" id="SIR_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4182 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep105" calculatedMassToCharge="415.5143737792969" experimentalMassToCharge="416.1649169921875" chargeState="3" id="SII_2_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4183 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84377_105_746"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4184 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85189_105_742"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4185 <PeptideEvidenceRef peptideEvidence_ref="PepEv_85956_105_697"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4186 <PeptideEvidenceRef peptideEvidence_ref="PepEv_94042_105_557"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4187 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-15" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4188 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="46" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4189 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.5078824E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4190 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="13.801412" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4191 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.45333335" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4192 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.45945945" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4193 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4194 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4195 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4196 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4197 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4198 <userParam value="400.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4199 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4200 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4201 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1208 experiment=3" id="SIR_38">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4202 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep106" calculatedMassToCharge="490.22198486328125" experimentalMassToCharge="490.20404052734375" chargeState="2" id="SII_38_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4203 <PeptideEvidenceRef peptideEvidence_ref="PepEv_37314_106_432"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4204 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-16" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4205 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="76" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4206 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.5935093E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4207 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="14.065715" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4208 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.45333335" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4209 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.45945945" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4210 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4211 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4212 <userParam value="0.015748031" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4213 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4214 <userParam value="0.015748031" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4215 <userParam value="889.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4216 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4217 <userParam value="4.8005342" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4218 <userParam value="0.8726339" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4219 <userParam value="4.8005342" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4220 <userParam value="0.8726339" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4221 <userParam value="-4.8005342" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4222 <userParam value="0.8726339" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4223 <userParam value="-4.8005342" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4224 <userParam value="0.8726339" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4225 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4226 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4227 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1214 experiment=2" id="SIR_58">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4228 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep107" calculatedMassToCharge="510.72637939453125" experimentalMassToCharge="510.2083740234375" chargeState="2" id="SII_58_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4229 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5805_107_1206"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4230 <PeptideEvidenceRef peptideEvidence_ref="PepEv_7003_107_1151"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4231 <PeptideEvidenceRef peptideEvidence_ref="PepEv_35125_107_1253"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4232 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4233 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="67" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4234 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.6073217E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4235 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="14.119779" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4236 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.45333335" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4237 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.45945945" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4238 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4239 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4240 <userParam value="0.0010373445" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4241 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4242 <userParam value="0.0010373445" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4243 <userParam value="1928.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4244 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4245 <userParam value="18.239857" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4246 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4247 <userParam value="18.239857" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4248 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4249 <userParam value="18.239857" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4250 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4251 <userParam value="18.239857" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4252 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4253 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4254 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4255 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1198 experiment=2" id="SIR_17">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4256 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep108" calculatedMassToCharge="438.2144775390625" experimentalMassToCharge="437.6932678222656" chargeState="2" id="SII_17_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4257 <PeptideEvidenceRef peptideEvidence_ref="PepEv_7831_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4258 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8686_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4259 <PeptideEvidenceRef peptideEvidence_ref="PepEv_35953_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4260 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36808_108_781"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4261 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-15" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4262 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="55" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4263 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.788726E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4264 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="14.746479" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4265 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.45333335" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4266 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.45945945" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4267 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4268 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4269 <userParam value="0.007352941" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4270 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4271 <userParam value="0.007352941" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4272 <userParam value="816.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4273 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4274 <userParam value="2.983935" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4275 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4276 <userParam value="2.983935" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4277 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4278 <userParam value="2.983935" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4279 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4280 <userParam value="2.983935" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4281 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4282 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4283 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4284 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1201 experiment=2" id="SIR_24">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4285 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep109" calculatedMassToCharge="439.1935729980469" experimentalMassToCharge="440.1820373535156" chargeState="2" id="SII_24_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4286 <PeptideEvidenceRef peptideEvidence_ref="PepEv_94192_109_80"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4287 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-13" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4288 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="44" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4289 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.8014934E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4290 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="14.796173" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4291 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.46666667" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4292 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.47297296" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4293 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4294 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4295 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4296 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4297 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4298 <userParam value="850.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4299 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4300 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4301 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1239 experiment=2" id="SIR_102">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4302 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep110" calculatedMassToCharge="486.2270812988281" experimentalMassToCharge="486.2041320800781" chargeState="2" id="SII_102_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4303 <PeptideEvidenceRef peptideEvidence_ref="PepEv_78879_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4304 <PeptideEvidenceRef peptideEvidence_ref="PepEv_79093_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4305 <PeptideEvidenceRef peptideEvidence_ref="PepEv_79300_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4306 <PeptideEvidenceRef peptideEvidence_ref="PepEv_79507_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4307 <PeptideEvidenceRef peptideEvidence_ref="PepEv_101025_110_43"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4308 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-28" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4309 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="56" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4310 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.9478173E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4311 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="15.365694" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4312 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.46753246" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4313 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.47368422" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4314 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4315 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4316 <userParam value="0.003539823" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4317 <userParam value="0.003539823" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4318 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4319 <userParam value="565.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4320 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4321 <userParam value="19.64971" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4322 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4323 <userParam value="19.64971" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4324 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4325 <userParam value="19.64971" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4326 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4327 <userParam value="19.64971" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4328 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4329 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4330 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4331 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1201 experiment=4" id="SIR_26">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4332 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep111" calculatedMassToCharge="793.35986328125" experimentalMassToCharge="792.8330078125" chargeState="2" id="SII_26_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4333 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44405_111_469"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4334 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-44" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4335 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="70" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4336 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.0535632E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4337 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="16.226818" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4338 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.46753246" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4339 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.47368422" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4340 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4341 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4342 <userParam value="0.016528925" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4343 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4344 <userParam value="0.016528925" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4345 <userParam value="121.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4346 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4347 <userParam value="0.32735664" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4348 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4349 <userParam value="0.32735664" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4350 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4351 <userParam value="0.32735664" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4352 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4353 <userParam value="0.32735664" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4354 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4355 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4356 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4357 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1188 experiment=3" id="SIR_6">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4358 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep112" calculatedMassToCharge="428.196044921875" experimentalMassToCharge="428.7035217285156" chargeState="2" id="SII_6_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4359 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5605_112_1006"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4360 <PeptideEvidenceRef peptideEvidence_ref="PepEv_6803_112_951"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4361 <PeptideEvidenceRef peptideEvidence_ref="PepEv_34925_112_1053"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4362 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4363 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="93" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4364 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="4.7757875E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4365 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="18.58832" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4366 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.46753246" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4367 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.47368422" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4368 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4369 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4370 <userParam value="0.07356322" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4371 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4372 <userParam value="0.07356322" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4373 <userParam value="870.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4374 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4375 <userParam value="9.841994" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4376 <userParam value="6.9095697" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4377 <userParam value="9.841994" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4378 <userParam value="6.9095697" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4379 <userParam value="-6.9095697" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4380 <userParam value="9.841994" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4381 <userParam value="-6.9095697" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4382 <userParam value="9.841994" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4383 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4384 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4385 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1213 experiment=2" id="SIR_54">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4386 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep113" calculatedMassToCharge="498.22113037109375" experimentalMassToCharge="497.6971435546875" chargeState="2" id="SII_54_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4387 <PeptideEvidenceRef peptideEvidence_ref="PepEv_68491_113_3012"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4388 <PeptideEvidenceRef peptideEvidence_ref="PepEv_76032_113_2942"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4389 <PeptideEvidenceRef peptideEvidence_ref="PepEv_97430_113_2942"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4390 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-19" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4391 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="66" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4392 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.252523E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4393 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="20.559427" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4394 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.47435898" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4395 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.48051947" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4396 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4397 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4398 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4399 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4400 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4401 <userParam value="1027.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4402 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4403 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4404 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1214 experiment=3" id="SIR_59">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4405 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep114" calculatedMassToCharge="493.5453796386719" experimentalMassToCharge="493.2047424316406" chargeState="3" id="SII_59_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4406 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15744_114_6240"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4407 <PeptideEvidenceRef peptideEvidence_ref="PepEv_21313_114_4198"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4408 <PeptideEvidenceRef peptideEvidence_ref="PepEv_42635_114_4122"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4409 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-25" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4410 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="81" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4411 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.50242E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4412 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="21.939798" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4413 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.47435898" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4414 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.48051947" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4415 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4416 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4417 <userParam value="0.11260504" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4418 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4419 <userParam value="0.11260504" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4420 <userParam value="595.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4421 <userParam value="2" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4422 <userParam value="17.520473" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4423 <userParam value="0.6188664" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4424 <userParam value="17.520473" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4425 <userParam value="0.6188664" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4426 <userParam value="0.6188526" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4427 <userParam value="17.520473" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4428 <userParam value="0.6188526" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4429 <userParam value="17.520473" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4430 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4431 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4432 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1200 experiment=2" id="SIR_21">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4433 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep115" calculatedMassToCharge="562.2216796875" experimentalMassToCharge="563.2123413085938" chargeState="2" id="SII_21_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4434 <PeptideEvidenceRef peptideEvidence_ref="PepEv_86278_115_95"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4435 <PeptideEvidenceRef peptideEvidence_ref="PepEv_101292_115_95"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4436 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-23" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4437 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="79" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4438 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="7.1178976E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4439 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="28.004656" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4440 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.4871795" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4441 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.4935065" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4442 <userParam value="2" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4443 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4444 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4445 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4446 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4447 <userParam value="552.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4448 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4449 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4450 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1229 experiment=5" id="SIR_93">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4451 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep116" calculatedMassToCharge="633.7927856445312" experimentalMassToCharge="633.7722778320312" chargeState="2" id="SII_93_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4452 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5603_116_1004"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4453 <PeptideEvidenceRef peptideEvidence_ref="PepEv_6801_116_949"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4454 <PeptideEvidenceRef peptideEvidence_ref="PepEv_34923_116_1051"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4455 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-28" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4456 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="78" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4457 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.0897915E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4458 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="31.981373" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4459 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4460 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.5063291" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4461 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4462 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4463 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4464 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4465 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4466 <userParam value="281.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4467 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4468 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep117" calculatedMassToCharge="633.2935180664062" experimentalMassToCharge="633.7722778320312" chargeState="2" id="SII_93_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4469 <PeptideEvidenceRef peptideEvidence_ref="PepEv_72012_117_6533"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4470 <PeptideEvidenceRef peptideEvidence_ref="PepEv_77513_117_4423"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4471 <PeptideEvidenceRef peptideEvidence_ref="PepEv_98911_117_4423"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4472 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-28" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4473 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="78" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4474 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.0897915E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4475 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="31.981373" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4476 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4477 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.5063291" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4478 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4479 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4480 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4481 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4482 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4483 <userParam value="281.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4484 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4485 <SpectrumIdentificationItem passThreshold="true" rank="3" peptide_ref="Pep118" calculatedMassToCharge="634.2715454101562" experimentalMassToCharge="633.7722778320312" chargeState="2" id="SII_93_3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4486 <PeptideEvidenceRef peptideEvidence_ref="PepEv_68042_118_2563"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4487 <PeptideEvidenceRef peptideEvidence_ref="PepEv_75583_118_2493"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4488 <PeptideEvidenceRef peptideEvidence_ref="PepEv_96981_118_2493"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4489 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-28" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4490 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="78" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4491 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.0897915E-4" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4492 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="32.122135" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4493 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4494 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.5063291" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4495 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4496 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4497 <userParam value="0.0035587188" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4498 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4499 <userParam value="0.0035587188" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4500 <userParam value="281.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4501 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4502 <userParam value="9.304958" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4503 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4504 <userParam value="9.304958" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4505 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4506 <userParam value="-9.304958" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4507 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4508 <userParam value="-9.304958" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4509 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4510 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4511 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4512 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1238 experiment=2" id="SIR_101">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4513 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep119" calculatedMassToCharge="455.3005065917969" experimentalMassToCharge="455.6540832519531" chargeState="3" id="SII_101_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4514 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36895_119_13"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4515 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-35" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4516 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="28" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4517 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0012417714" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4518 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="49.09095" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4519 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4520 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.5063291" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4521 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4522 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4523 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4524 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4525 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4526 <userParam value="352.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4527 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4528 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4529 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1188 experiment=2" id="SIR_5">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4530 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep120" calculatedMassToCharge="489.68280029296875" experimentalMassToCharge="489.1662292480469" chargeState="2" id="SII_5_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4531 <PeptideEvidenceRef peptideEvidence_ref="PepEv_60905_120_331"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4532 <PeptideEvidenceRef peptideEvidence_ref="PepEv_62158_120_331"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4533 <PeptideEvidenceRef peptideEvidence_ref="PepEv_90178_120_331"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4534 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-32" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4535 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="44" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4536 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0026912391" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4537 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="104.74841" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4538 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="0.5125" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4539 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="0.51898736" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4540 <userParam value="-1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4541 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4542 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4543 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4544 <userParam value="0.0" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4545 <userParam value="352.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4546 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4547 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4548 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="sample=1 period=1 cycle=1211 experiment=4" id="SIR_48">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4549 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep121" calculatedMassToCharge="677.2850341796875" experimentalMassToCharge="677.2626342773438" chargeState="2" id="SII_48_1">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4550 <PeptideEvidenceRef peptideEvidence_ref="PepEv_66843_121_1364"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4551 <PeptideEvidenceRef peptideEvidence_ref="PepEv_74384_121_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4552 <PeptideEvidenceRef peptideEvidence_ref="PepEv_95782_121_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4553 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-42" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4554 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="40" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4555 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0031106102" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4556 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="123.513" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4557 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4558 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4559 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4560 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4561 <userParam value="0.02173913" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4562 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4563 <userParam value="0.02173913" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4564 <userParam value="138.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4565 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4566 <userParam value="5.6731687" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4567 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4568 <userParam value="5.6731687" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4569 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4570 <userParam value="-5.6731687" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4571 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4572 <userParam value="-5.6731687" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4573 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4574 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4575 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep122" calculatedMassToCharge="676.79296875" experimentalMassToCharge="677.2626342773438" chargeState="2" id="SII_48_2">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4576 <PeptideEvidenceRef peptideEvidence_ref="PepEv_66843_122_1364"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4577 <PeptideEvidenceRef peptideEvidence_ref="PepEv_74384_122_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4578 <PeptideEvidenceRef peptideEvidence_ref="PepEv_95782_122_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4579 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-42" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4580 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="40" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4581 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0031106102" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4582 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="123.513" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4583 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4584 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4585 <userParam value="1" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4586 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4587 <userParam value="0.02173913" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4588 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4589 <userParam value="0.02173913" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4590 <userParam value="138.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4591 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4592 <userParam value="5.6731687" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4593 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4594 <userParam value="5.6731687" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4595 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4596 <userParam value="-5.6731687" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4597 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4598 <userParam value="-5.6731687" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4599 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4600 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4601 <SpectrumIdentificationItem passThreshold="true" rank="3" peptide_ref="Pep123" calculatedMassToCharge="677.2850341796875" experimentalMassToCharge="677.2626342773438" chargeState="2" id="SII_48_3">
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4602 <PeptideEvidenceRef peptideEvidence_ref="PepEv_66843_123_1364"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4603 <PeptideEvidenceRef peptideEvidence_ref="PepEv_74384_123_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4604 <PeptideEvidenceRef peptideEvidence_ref="PepEv_95782_123_1294"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4605 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-42" name="MS-GF:RawScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4606 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="40" name="MS-GF:DeNovoScore"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4607 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0031106102" name="MS-GF:SpecEValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4608 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="123.513" name="MS-GF:EValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4609 <cvParam accession="MS:1002054" cvRef="PSI-MS" value="1.0" name="MS-GF:QValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4610 <cvParam accession="MS:1002055" cvRef="PSI-MS" value="1.0" name="MS-GF:PepQValue"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4611 <userParam value="0" name="IsotopeError"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4612 <userParam value="HCD" name="AssumedDissociationMethod"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4613 <userParam value="0.02173913" name="ExplainedIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4614 <userParam value="0.0" name="NTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4615 <userParam value="0.02173913" name="CTermIonCurrentRatio"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4616 <userParam value="138.0" name="MS2IonCurrent"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4617 <userParam value="1" name="NumMatchedMainIons"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4618 <userParam value="5.6731687" name="MeanErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4619 <userParam value="0.0" name="StdevErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4620 <userParam value="5.6731687" name="MeanErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4621 <userParam value="0.0" name="StdevErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4622 <userParam value="-5.6731687" name="MeanRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4623 <userParam value="0.0" name="StdevRelErrorAll"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4624 <userParam value="-5.6731687" name="MeanRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4625 <userParam value="0.0" name="StdevRelErrorTop7"/>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4626 </SpectrumIdentificationItem>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4627 </SpectrumIdentificationResult>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4628 </SpectrumIdentificationList>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4629 </AnalysisData>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4630 </DataCollection>
032c02d10694 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
galaxyp
parents:
diff changeset
4631 </MzIdentML>