Mercurial > repos > galaxyp > mass_spectrometry_imaging_segmentations
comparison segmentation_tool.xml @ 3:830c6df59603 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_segmentation commit 06c2b45d8644b1d7fc01622a5c59dcbf8886d0f1
author | galaxyp |
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date | Mon, 23 Apr 2018 17:19:53 -0400 |
parents | f66c5789deac |
children | aec189b0c64d |
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2:f66c5789deac | 3:830c6df59603 |
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1 <tool id="mass_spectrometry_imaging_segmentations" name="MSI segmentation" version="1.7.0.2"> | 1 <tool id="mass_spectrometry_imaging_segmentations" name="MSI segmentation" version="1.7.0.3"> |
2 <description>tool for spatial clustering</description> | 2 <description>tool for spatial clustering</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement> | 4 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement> |
5 <requirement type="package" version="2.2.1">r-gridextra</requirement> | 5 <requirement type="package" version="2.2.1">r-gridextra</requirement> |
6 <requirement type="package" version="2.23-15">r-kernsmooth</requirement> | 6 <requirement type="package" version="2.23-15">r-kernsmooth</requirement> |
311 </sanitizer> | 311 </sanitizer> |
312 </param> | 312 </param> |
313 </repeat> | 313 </repeat> |
314 </inputs> | 314 </inputs> |
315 <outputs> | 315 <outputs> |
316 <data format="pdf" name="segmentationimages" from_work_dir="segmentationpdf.pdf" label = "${tool.name} on $infile.display_name"/> | 316 <data format="pdf" name="segmentationimages" from_work_dir="segmentationpdf.pdf" label = "${tool.name} ${on_string}"/> |
317 <data format="tabular" name="mzfeatures" label="mzfeatures ${tool.name} on $infile.display_name"/> | 317 <data format="tabular" name="mzfeatures" label="Mz features ${on_string}"/> |
318 <data format="tabular" name="pixeloutput" label="pixels ${tool.name} on $infile.display_name"/> | 318 <data format="tabular" name="pixeloutput" label="Pixels ${on_string}"/> |
319 </outputs> | 319 </outputs> |
320 <tests> | 320 <tests> |
321 <test> | 321 <test> |
322 <param name="infile" value="" ftype="imzml"> | 322 <param name="infile" value="" ftype="imzml"> |
323 <composite_data value="Example_Continuous.imzML"/> | 323 <composite_data value="Example_Continuous.imzML"/> |