Mercurial > repos > galaxyp > maxquant

comparison maxquant_mqpar.xml @ 22:9c52362ae7bb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit c810d2eaedfcad1edf1a84cab8296dcd7b35f5bc
author galaxyp
date Mon, 18 Mar 2024 13:07:04 +0000
parents 8934bc76bb52
children
comparison
equal deleted inserted replaced
21:8934bc76bb52 22:9c52362ae7bb
1 <tool id="maxquant_mqpar" name="MaxQuant (using mqpar.xml)" version="@VERSION@+galaxy@VERSION_SUFFIX_MQPAR@" profile="@PROFILE@"> 1 <tool id="maxquant_mqpar" name="MaxQuant (using mqpar.xml)" version="@VERSION@+galaxy@VERSION_SUFFIX_MQPAR@" profile="@PROFILE@">
2 <macros> 2 <macros>
3 <import>macros.xml</import> 3 <import>macros.xml</import>
4 </macros> 4 </macros>
5 <expand macro="xrefs"/>
5 <expand macro="requirements"/> 6 <expand macro="requirements"/>
6 <expand macro="required_files"/> 7 <expand macro="required_files"/>
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 export COMPlus_EnableDiagnostics=0 && 9 export COMPlus_EnableDiagnostics=0 &&
9 ## link galaxy datasets to filenames accepted by maxquant 10 ## link galaxy datasets to filenames accepted by maxquant
129 </inputs> 130 </inputs>
130 131
131 <expand macro="outputs"/> 132 <expand macro="outputs"/>
132 133
133 <tests> 134 <tests>
134 <test> 135 <test expect_num_outputs="19">
135 <param name="ftype" value=".mzxml" /> 136 <param name="ftype" value=".mzxml" />
136 <param name="infiles" value="BSA_min_22,BSA_min_21.mzXML" /> 137 <param name="infiles" value="BSA_min_22,BSA_min_21.mzXML" />
137 <param name="fasta_files" value="bsa.fasta" /> 138 <param name="fasta_files" value="bsa.fasta" />
138 <param name="identifier_parse_rule" value="&gt;([^\s]*)" /> 139 <param name="identifier_parse_rule" value="&gt;([^\s]*)" />
139 <param name="description_parse_rule" value="&gt;(.*)" /> 140 <param name="description_parse_rule" value="&gt;(.*)" />