Mercurial > repos > galaxyp > maxquant

comparison test-data/01/config.yml @ 7:d253b379322b draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit f63ff6d5d0c44012a17e87293811765951655bd5"
author galaxyp
date Mon, 01 Jun 2020 11:51:25 -0400
parents 2133b0be850a
children 0839f84def5e
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6:2133b0be850a 7:d253b379322b
12 lfqStabilizeLargeRatios: True 12 lfqStabilizeLargeRatios: True
13 lfqRequireMsms: True 13 lfqRequireMsms: True
14 advancedSiteIntensities: True 14 advancedSiteIntensities: True
15 matchBetweenRuns: False 15 matchBetweenRuns: False
16 includeContaminants: True 16 includeContaminants: True
17 minPeptideLengthForUnspecificSearch: 8
18 maxPeptideLengthForUnspecificSearch: 25
19 decoyMode: revert
20 peptideFdr: 0.01
21 proteinFdr: 0.01
17 quantMode: 1 22 quantMode: 1
18 restrictProteinQuantification: True 23 restrictProteinQuantification: True
19 restrictMods: [] 24 restrictMods: [Oxidation (M),Acetyl (Protein N-term)]
20 useCounterparts: True 25 useCounterparts: True
21 paramGroups: 26 paramGroups:
22 - files: ['BSA_min_23.mzXML'] 27 - files: ['BSA_min_23.mzXML']
23 maxMissedCleavages: 1 28 maxMissedCleavages: 1
24 fixedModifications: [Carbamidomethyl (C)] 29 fixedModifications: [Carbamidomethyl (C)]