Mercurial > repos > galaxyp > maxquant

comparison test-data/04/config.yml @ 4:dcd39bcc7481 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author galaxyp
date Sat, 11 Apr 2020 11:49:19 -0400
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children 2133b0be850a
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3:175e062b6a17 4:dcd39bcc7481
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2 fastaFiles: [/home/galaxy/galaxy/database/files/000/dataset_4.dat]
3 parseRules:
4 identifierParseRule: '>([^\s]*)'
5 descriptionParseRule: '>(.*)'
6 minUniquePeptides: 0
7 minPepLen: 7
8 maxPeptideMass: 4600
9 calcPeakProperties: False
10 writeMzTab: False
11 separateLfq: False
12 lfqStabilizeLargeRatios: True
13 lfqRequireMsms: True
14 advancedSiteIntensities: True
15 matchBetweenRuns: False
16 paramGroups:
17 - files: ['BSA_min_23.mzXML', 'BSA_min_22.mzxml']
18 maxMissedCleavages: 2
19 fixedModifications: [Carbamidomethyl (C)]
20 variableModifications: [Oxidation (M)]
21 enzymes: [Trypsin/P]
22 labelMods:
23 - [Arg6,Lys4]
24 - []
25 - [Arg10,DimethLys8]
26