Mercurial > repos > galaxyp > maxquant

diff test-data/01/combined/txt/msms.txt @ 21:8934bc76bb52 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 419e4f6608f60f0d73987b890d6b7f8854e874fb
author galaxyp
date Mon, 19 Jun 2023 17:02:17 +0000
parents 0839f84def5e
children
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--- a/test-data/01/combined/txt/msms.txt	Tue Jan 31 18:14:40 2023 +0000
+++ b/test-data/01/combined/txt/msms.txt	Mon Jun 19 17:02:17 2023 +0000
@@ -1,7 +1,7 @@
 Raw file	Scan number	Scan index	Sequence	Length	Missed cleavages	Modifications	Modified sequence	Oxidation (M) Probabilities	Oxidation (M) Score diffs	Oxidation (M)	Proteins	Charge	Fragmentation	Mass analyzer	Type	Scan event number	Isotope index	m/z	Mass	Mass error [ppm]	Mass error [Da]	Simple mass error [ppm]	Retention time	PEP	Score	Delta score	Score diff	Localization prob	Combinatorics	PIF	Fraction of total spectrum	Base peak fraction	Precursor full scan number	Precursor Intensity	Precursor apex fraction	Precursor apex offset	Precursor apex offset time	Matches	Intensities	Mass deviations [Da]	Mass deviations [ppm]	Masses	Number of matches	Intensity coverage	Peak coverage	Neutral loss level	ETD identification type	Reverse	All scores	All sequences	All modified sequences	Reporter PIF	Reporter fraction	id	Protein group IDs	Peptide ID	Mod. peptide ID	Evidence ID	Oxidation (M) site IDs
-BSA_min_23	96	77	DSFDIIK	7	0	Unmodified	_DSFDIIK_			0	CON__ENSEMBL:ENSBTAP00000016046	2	CID	FTMS	MULTI-MSMS	1	0	419.22127	836.42798	0.51923	0.00021767	NaN	0.57043	0.010549	0	0	NaN	NaN	1	0	0	0	95	346270.625	0.704625040984097	-1	0.0243583333333334						0	0	0	None	Unknown		0	DSFDIIK	_DSFDIIK_			0	1	0	0	0	
+BSA_min_23	96	77	DSFDIIK	7	0	Unmodified	_DSFDIIK_			0	CON__ENSEMBL:ENSBTAP00000016046	2	CID	FTMS	MULTI-MSMS	1	0	419.22127	836.42798	0.51923	0.00021767	NaN	0.57043	0.010549	0	0	NaN	NaN	1	0	0	0	95	346270.625	0.704625040984097	-1	0.0243583333333334						0	0	0	None	Unknown		0	DSFDIIK	_DSFDIIK_			0	2	0	0	0	
 BSA_min_23	86	70	LLESEECR	8	0	Unmodified	_LLESEECR_			0	CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	2	CID	FTMS	MSMS	5		518.24241	1034.4703	NaN	NaN	NaN	0.50957	0.0075205	1.6313	1.6313	NaN	NaN	1	0	0	0	81	10271.2001953125	1	0	0	y6	10	0.0135096433999706	16.6930827476743	809.2958984375	1	0.00309955136291107	0.00847457627118644	None	Unknown		1.63126590808724;0;0	LLESEECR;LGSDMEDLR;QLNQEMEK	_LLESEECR_;_LGSDMEDLR_;_QLNQEM(Oxidation (M))EK_			1	5	1	1	1	
-BSA_min_23	2	0	LVTDLTK	7	0	Unmodified	_LVTDLTK_			0	bsa;CON__P02769;CON__P02768-1	2	CID	FTMS	MSMS	1		395.23946	788.46437	NaN	NaN	NaN	0.010013	0.0046553	0	0	NaN	NaN	1	0	0	0	-1	NaN	NaN	0	NaN						0	0	0	None	Unknown		0;0	LVTDLTK;DSLLTLK	_LVTDLTK_;_DSLLTLK_			2	3	2	2	2	
-BSA_min_23	96	77	QLELEKQLEK	10	1	Unmodified	_QLELEKQLEK_			0	CON__ENSEMBL:ENSBTAP00000001528	3	CID	FTMS	MULTI-SECPEP	1	-2	419.90648	1256.6976	0.05222	2.1927E-05	NaN	0.57043	0.011549	0	0	NaN	NaN	1	0	0	0	95	346270.625	0.704625040984097	-1	0.0243583333333334						0	0	0	None	Unknown		0	QLELEKQLEK	_QLELEKQLEK_			3	0	3	3	3	
+BSA_min_23	2	0	LVTDLTK	7	0	Unmodified	_LVTDLTK_			0	CON__P02769;bsa;CON__P02768-1	2	CID	FTMS	MSMS	1		395.23946	788.46437	NaN	NaN	NaN	0.010013	0.0046553	0	0	NaN	NaN	1	0	0	0	-1	NaN	NaN	0	NaN						0	0	0	None	Unknown		0;0	LVTDLTK;DSLLTLK	_LVTDLTK_;_DSLLTLK_			2	0	2	2	2	
+BSA_min_23	96	77	QLELEKQLEK	10	1	Unmodified	_QLELEKQLEK_			0	CON__ENSEMBL:ENSBTAP00000001528	3	CID	FTMS	MULTI-SECPEP	1	-2	419.90648	1256.6976	0.05222	2.1927E-05	NaN	0.57043	0.011549	0	0	NaN	NaN	1	0	0	0	95	346270.625	0.704625040984097	-1	0.0243583333333334						0	0	0	None	Unknown		0	QLELEKQLEK	_QLELEKQLEK_			3	1	3	3	3	
 BSA_min_23	17	13	SLSAIRER	8	1	Unmodified	_SLSAIRER_			0	CON__Q03247	2	CID	FTMS	MULTI-SECPEP	4	-1	466.26962	930.52468	-3.0889	-0.0014403	NaN	0.096553	0.011549	0	0	NaN	NaN	1	0	0	0	-1	NaN	NaN	0	NaN						0	0	0	None	Unknown		0	SLSAIRER	_SLSAIRER_			4	4	4	4	4	
-BSA_min_23	72	58	TLGPWGQR	8	0	Unmodified	_TLGPWGQR_			0	CON__ENSEMBL:ENSBTAP00000018574	2	CID	FTMS	MULTI-MSMS	1	0	457.74578	913.477	-0.28247	-0.0001293	NaN	0.42593	0.01108	0	0	NaN	NaN	1	0	0	0	71	32936.3203125	0.758644306612328	-2	0.0615566666666666						0	0	0	None	Unknown		0;0	TLGPWGQR;IHVFNER	_TLGPWGQR_;_IHVFNER_			5	2	5	5	5	
+BSA_min_23	72	58	TLGPWGQR	8	0	Unmodified	_TLGPWGQR_			0	CON__ENSEMBL:ENSBTAP00000018574	2	CID	FTMS	MULTI-MSMS	1	0	457.74578	913.477	-0.28247	-0.0001293	NaN	0.42593	0.01108	0	0	NaN	NaN	1	0	0	0	71	32936.3203125	0.758644306612328	-2	0.0615566666666666						0	0	0	None	Unknown		0;0	TLGPWGQR;IHVFNER	_TLGPWGQR_;_IHVFNER_			5	3	5	5	5