--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/maxquant_mods.loc.sample.default	Fri May 10 17:22:51 2013 -0400
@@ -0,0 +1,396 @@
+Oxidation (M)
+Acetyl (Protein N-term)
+Acetyl (K)
+Ala->Arg
+Ala->Asn
+Ala->Asp
+Ala->CamCys
+Ala->Cys
+Ala->Gln
+Ala->Glu
+Ala->Gly
+Ala->His
+Ala->Lys
+Ala->Met
+Ala->Phe
+Ala->Pro
+Ala->Ser
+Ala->Thr
+Ala->Trp
+Ala->Tyr
+Ala->Val
+Ala->Xle
+Arg->Ala
+Arg->Asn
+Arg->Asp
+Arg->CamCys
+Arg->Cys
+Arg->Gln
+Arg->Glu
+Arg->Gly
+Arg->His
+Arg->Lys
+Arg->Met
+Arg->Phe
+Arg->Pro
+Arg->Ser
+Arg->Thr
+Arg->Trp
+Arg->Tyr
+Arg->Val
+Arg->Xle
+Asn->Ala
+Asn->Arg
+Asn->Asp
+Asn->CamCys
+Asn->Cys
+Asn->Gln
+Asn->Glu
+Asn->Gly
+Asn->His
+Asn->Lys
+Asn->Met
+Asn->Phe
+Asn->Pro
+Asn->Ser
+Asn->Thr
+Asn->Trp
+Asn->Tyr
+Asn->Val
+Asn->Xle
+Asp->Ala
+Asp->Arg
+Asp->Asn
+Asp->CamCys
+Asp->Cys
+Asp->Gln
+Asp->Glu
+Asp->Gly
+Asp->His
+Asp->Lys
+Asp->Met
+Asp->Phe
+Asp->Pro
+Asp->Ser
+Asp->Thr
+Asp->Trp
+Asp->Tyr
+Asp->Val
+Asp->Xle
+CamCys->Ala
+CamCys->Arg
+CamCys->Asn
+CamCys->Asp
+CamCys->Gln
+CamCys->Glu
+CamCys->Gly
+CamCys->His
+CamCys->Lys
+CamCys->Met
+CamCys->Phe
+CamCys->Pro
+CamCys->Ser
+CamCys->Thr
+CamCys->Trp
+CamCys->Tyr
+CamCys->Val
+CamCys->Xle
+Carbamidomethyl (C)
+Cys->Ala
+Cys->Arg
+Cys->Asn
+Cys->Asp
+Cys->Gln
+Cys->Glu
+Cys->Gly
+Cys->His
+Cys->Lys
+Cys->Met
+Cys->Phe
+Cys->Pro
+Cys->Ser
+Cys->Thr
+Cys->Trp
+Cys->Tyr
+Cys->Val
+Cys->Xle
+Deamidation (N)
+Deamidation (NQ)
+Deamidation 18O (N)
+Dimethyl (KR)
+Gln->Ala
+Gln->Arg
+Gln->Asn
+Gln->Asp
+Gln->CamCys
+Gln->Cys
+Gln->Glu
+Gln->Gly
+Gln->His
+Gln->Lys
+Gln->Met
+Gln->Phe
+Gln->Pro
+Gln->pyro-Glu
+Gln->Ser
+Gln->Thr
+Gln->Trp
+Gln->Tyr
+Gln->Val
+Gln->Xle
+Glu->Ala
+Glu->Arg
+Glu->Asn
+Glu->Asp
+Glu->CamCys
+Glu->Cys
+Glu->Gln
+Glu->Gly
+Glu->His
+Glu->Lys
+Glu->Met
+Glu->Phe
+Glu->Pro
+Glu->pyro-Glu
+Glu->Ser
+Glu->Thr
+Glu->Trp
+Glu->Tyr
+Glu->Val
+Glu->Xle
+Gly->Ala
+Gly->Arg
+Gly->Asn
+Gly->Asp
+Gly->CamCys
+Gly->Cys
+Gly->Gln
+Gly->Glu
+Gly->His
+Gly->Lys
+Gly->Met
+Gly->Phe
+Gly->Pro
+Gly->Ser
+Gly->Thr
+Gly->Trp
+Gly->Tyr
+Gly->Val
+Gly->Xle
+GlyGly (K)
+His->Ala
+His->Arg
+His->Asn
+His->Asp
+His->CamCys
+His->Cys
+His->Gln
+His->Glu
+His->Gly
+His->Lys
+His->Met
+His->Phe
+His->Pro
+His->Ser
+His->Thr
+His->Trp
+His->Tyr
+His->Val
+His->Xle
+Lys->Ala
+Lys->Arg
+Lys->Asn
+Lys->Asp
+Lys->CamCys
+Lys->Cys
+Lys->Gln
+Lys->Glu
+Lys->Gly
+Lys->His
+Lys->Met
+Lys->Phe
+Lys->Pro
+Lys->Ser
+Lys->Thr
+Lys->Trp
+Lys->Tyr
+Lys->Val
+Lys->Xle
+Met->Ala
+Met->Arg
+Met->Asn
+Met->Asp
+Met->CamCys
+Met->Cys
+Met->Gln
+Met->Glu
+Met->Gly
+Met->His
+Met->Lys
+Met->Phe
+Met->Pro
+Met->Ser
+Met->Thr
+Met->Trp
+Met->Tyr
+Met->Val
+Met->Xle
+Methyl (KR)
+OHexNAc
+Phe->Ala
+Phe->Arg
+Phe->Asn
+Phe->Asp
+Phe->CamCys
+Phe->Cys
+Phe->Gln
+Phe->Glu
+Phe->Gly
+Phe->His
+Phe->Lys
+Phe->Met
+Phe->Pro
+Phe->Ser
+Phe->Thr
+Phe->Trp
+Phe->Tyr
+Phe->Val
+Phe->Xle
+Phospho (STY)
+Pro->Ala
+Pro->Arg
+Pro->Asn
+Pro->Asp
+Pro->CamCys
+Pro->Cys
+Pro->Gln
+Pro->Glu
+Pro->Gly
+Pro->His
+Pro->Lys
+Pro->Met
+Pro->Phe
+Pro->Ser
+Pro->Thr
+Pro->Trp
+Pro->Tyr
+Pro->Val
+Pro->Xle
+Pro5
+Pro6
+QQTGG (K)
+Ser->Ala
+Ser->Arg
+Ser->Asn
+Ser->Asp
+Ser->CamCys
+Ser->Cys
+Ser->Gln
+Ser->Glu
+Ser->Gly
+Ser->His
+Ser->Lys
+Ser->Met
+Ser->Phe
+Ser->Pro
+Ser->Thr
+Ser->Trp
+Ser->Tyr
+Ser->Val
+Ser->Xle
+Thr->Ala
+Thr->Arg
+Thr->Asn
+Thr->Asp
+Thr->CamCys
+Thr->Cys
+Thr->Gln
+Thr->Glu
+Thr->Gly
+Thr->His
+Thr->Lys
+Thr->Met
+Thr->Phe
+Thr->Pro
+Thr->Ser
+Thr->Trp
+Thr->Tyr
+Thr->Val
+Thr->Xle
+Trimethyl (K)
+Trp->Ala
+Trp->Arg
+Trp->Asn
+Trp->Asp
+Trp->CamCys
+Trp->Cys
+Trp->Gln
+Trp->Glu
+Trp->Gly
+Trp->His
+Trp->Lys
+Trp->Met
+Trp->Phe
+Trp->Pro
+Trp->Ser
+Trp->Thr
+Trp->Tyr
+Trp->Val
+Trp->Xle
+Tyr->Ala
+Tyr->Arg
+Tyr->Asn
+Tyr->Asp
+Tyr->CamCys
+Tyr->Cys
+Tyr->Gln
+Tyr->Glu
+Tyr->Gly
+Tyr->His
+Tyr->Lys
+Tyr->Met
+Tyr->Phe
+Tyr->Pro
+Tyr->Ser
+Tyr->Thr
+Tyr->Trp
+Tyr->Val
+Tyr->Xle
+Val->Ala
+Val->Arg
+Val->Asn
+Val->Asp
+Val->CamCys
+Val->Cys
+Val->Gln
+Val->Glu
+Val->Gly
+Val->His
+Val->Lys
+Val->Met
+Val->Phe
+Val->Pro
+Val->Ser
+Val->Thr
+Val->Trp
+Val->Tyr
+Val->Xle
+Xle->Ala
+Xle->Arg
+Xle->Asn
+Xle->Asp
+Xle->CamCys
+Xle->Cys
+Xle->Gln
+Xle->Glu
+Xle->Gly
+Xle->His
+Xle->Lys
+Xle->Met
+Xle->Phe
+Xle->Pro
+Xle->Ser
+Xle->Thr
+Xle->Trp
+Xle->Tyr
+Xle->Val