Mercurial > repos > galaxyp > maxquant
diff test-data/01/combined/txt/mzTab.mzTab @ 4:dcd39bcc7481 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
| author | galaxyp |
|---|---|
| date | Sat, 11 Apr 2020 11:49:19 -0400 |
| parents | |
| children | 0839f84def5e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/01/combined/txt/mzTab.mzTab Sat Apr 11 11:49:19 2020 -0400 @@ -0,0 +1,49 @@ +MTD mzTab-version 1.0.0 +MTD mzTab-mode Complete +MTD mzTab-type Identification +MTD title null +MTD description null +MTD software[1] [MS, MS:1001583, MaxQuant,1.6.10.43] +COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),] +MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,] +MTD fixed_mod[1]-site C +MTD fixed_mod[1]-position Anywhere +COM [, CHEMMOD:15.9949146221, Oxidation (M),] +MTD variable_mod[1] [, , CHEMMOD:15.9949146221,] +MTD variable_mod[1]-site M +MTD variable_mod[1]-position Anywhere +MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ] +MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ] +MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ] +MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda:PEP, ] +MTD ms_run[1]-format [MS, MS:1002996, Andromeda:apl file format, ] +MTD ms_run[1]-location file://d:/shared/dglaetzer/maxquant_tool/test1/combined/andromeda/allspectra.cid.ftms.secpep.sil0_0.apl +MTD ms_run[1]-id_format [MS, MS:1000776, scan number only nativeID format, ] +MTD ms_run[2]-format [MS, MS:1002996, Andromeda:apl file format, ] +MTD ms_run[2]-location file://d:/shared/dglaetzer/maxquant_tool/test1/combined/andromeda/allspectra.cid.ftms.iso_0.apl +MTD ms_run[2]-id_format [MS, MS:1000776, scan number only nativeID format, ] + +PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] search_engine_score[1]_ms_run[2] num_psms_ms_run[1] num_psms_ms_run[2] num_peptides_distinct_ms_run[1] num_peptides_distinct_ms_run[2] num_peptides_unique_ms_run[1] num_peptides_unique_ms_run[2] ambiguity_members modifications protein_coverage opt_global_cv_MS:1002217_decoy_peptide +PRT CON__P02769 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 6.22453365714539 null null null null null null null null CON__P02769, bsa, CON__P02768-1 null 0.012 0 +PRT CON__ENSEMBL:ENSBTAP00000001528 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 7.46941253488722 null null null null null null null null CON__ENSEMBL:ENSBTAP00000001528 null 0.008 0 +PRT CON__ENSEMBL:ENSBTAP00000016046 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 8.04777465053044 null null null null null null null null CON__ENSEMBL:ENSBTAP00000016046 null 0.01 0 +PRT CON__ENSEMBL:ENSBTAP00000018574 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 7.73737648138078 null null null null null null null null CON__ENSEMBL:ENSBTAP00000018574 null 0.016 0 +PRT CON__P50446 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 6.03764269117454 null null null null null null null null CON__P50446 null 0.025 0 +PRT CON__Q03247 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 5.81086493552667 null null null null null null null null CON__Q03247 null 0.025 0 +PRT CON__Q14CN4-1 null null null null null [MS, MS:1002337, Andromeda, 1.6.10.43] 5.99478997658237 null null null null null null null null CON__Q14CN4-1, CON__Q3SY84, CON__Q9R0H5 null 0.016 0 + +PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide +PSM DSFDIIK 1 CON__ENSEMBL:ENSBTAP00000016046 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 8.95829478642414E-05 null 0.570428333333333 2 419.22 419.22127 ms_run[2]:index=5 R R 646 652 96 0 +PSM LLESEECR 2 CON__Q14CN4-1 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 +PSM LLESEECR 2 CON__Q3SY84 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 +PSM LLESEECR 2 CON__Q9R0H5 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 1.63126590808724 0.0101206876914345 null 0.509571666666667 2 518.24 518.24241 ms_run[2]:index=13 K M 430 437 86 0 +PSM LVTDLTK 3 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 +PSM LVTDLTK 3 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 +PSM LVTDLTK 3 CON__P02768-1 0 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00596302105559693 null 0.0100133333333333 2 395.24 395.23946 ms_run[2]:index=4 K V 257 263 2 0 +PSM QLELEKQLEK 4 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00033930281684504 null 0.304175 2 629.36 629.35608 ms_run[2]:index=31 R Q 408 417 52 0 +PSM QLELEKQLEK 5 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00033930281684504 null 0.487221666666667 2 629.36 629.35608 ms_run[2]:index=30 R Q 408 417 82 0 +PSM QLELEKQLEK 6 CON__ENSEMBL:ENSBTAP00000001528 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.015457350844535 null 0.570428333333333 3 419.91 419.90648 ms_run[1]:index=5 R Q 408 417 96 0 +PSM SLSAIRER 7 CON__Q03247 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.015457350844535 null 0.0965533333333333 2 466.27 466.26962 ms_run[1]:index=2 R F 190 197 17 0 +PSM SQTSHRGYSASSAR 8 CON__P50446 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.00916974606023747 null 0.309418333333333 2 747.86 747.85583 ms_run[2]:index=48 K V 9 22 53 0 +PSM TLGPWGQR 9 CON__ENSEMBL:ENSBTAP00000018574 1 null null [MS, MS:1002338, Andromeda:score, 1.6.10.43] 0 0.000183072671316044 null 0.425933333333333 2 457.75 457.74578 ms_run[2]:index=9 R D 20 27 72 0 +