Mercurial > repos > galaxyp > maxquant
view test-data/02/config.yml @ 12:0839f84def5e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author | galaxyp |
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date | Sun, 20 Jun 2021 16:37:41 +0000 |
parents | d253b379322b |
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fastaFiles: [/tmp/tmpyzym30dx/files/d/3/1/dataset_d314bbcd-5f08-4e93-b285-2ad6e4739fc9.dat] parseRules: identifierParseRule: '>([^\s]*)' descriptionParseRule: '>(.*)' minUniquePeptides: 0 minPepLen: 7 maxPeptideMass: 4600 calcPeakProperties: False writeMzTab: True separateLfq: False lfqStabilizeLargeRatios: True lfqRequireMsms: True advancedSiteIntensities: True matchBetweenRuns: False includeContaminants: False minPeptideLengthForUnspecificSearch: 7 maxPeptideLengthForUnspecificSearch: 24 decoyMode: randomize peptideFdr: 0.5 proteinFdr: 0.4 quantMode: 0 restrictProteinQuantification: True restrictMods: [Pro5,Pro6] useCounterparts: True paramGroups: - files: ['BSA_min_23.mzXML'] maxMissedCleavages: 2 fixedModifications: [] variableModifications: [Oxidation (M)] enzymes: [Trypsin/P] enzymeMode: 0 lcmsRunType: 'Reporter ion MS2' reporterMassTolerance: 0.003 reporterPif: 0 reporterFraction: 0 reporterBasePeakRatio: 0 filterPif: False isobaricLabels: - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True] - ['TMT2plex-Lys127','TMT2plex-Nter127',0.0,0.0,0.0,0.0,True] - files: ['BSA_min_22.mzxml'] maxMissedCleavages: 2 fixedModifications: [] variableModifications: [] enzymes: [] enzymeMode: 0 lcmsRunType: 'Reporter ion MS2' reporterMassTolerance: 0.003 reporterPif: 0.8 reporterFraction: 0 reporterBasePeakRatio: 0 filterPif: True isobaricLabels: - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False] - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False] - [iTRAQ4plex-Lys116,iTRAQ4plex-Nter116,0,0,0,0,False] - [iTRAQ4plex-Lys117,iTRAQ4plex-Nter117,0,0,0,0,False]