Mercurial > repos > galaxyp > maxquant
view test-data/04/config.yml @ 12:0839f84def5e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author | galaxyp |
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date | Sun, 20 Jun 2021 16:37:41 +0000 |
parents | d253b379322b |
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fastaFiles: [/tmp/tmpyzym30dx/files/a/5/9/dataset_a592c8b5-872b-4804-9f05-abeef0fda2f1.dat] parseRules: identifierParseRule: '>([^\s]*)' descriptionParseRule: '>(.*)' minUniquePeptides: 0 minPepLen: 7 maxPeptideMass: 4600 calcPeakProperties: False writeMzTab: False separateLfq: False lfqStabilizeLargeRatios: True lfqRequireMsms: True advancedSiteIntensities: True matchBetweenRuns: False includeContaminants: True minPeptideLengthForUnspecificSearch: 8 maxPeptideLengthForUnspecificSearch: 25 decoyMode: revert peptideFdr: 0.01 proteinFdr: 0.01 quantMode: 1 restrictProteinQuantification: True restrictMods: [Oxidation (M),Acetyl (Protein N-term)] useCounterparts: True paramGroups: - files: ['BSA_min_23.mzXML', 'BSA_min_22.mzxml'] maxMissedCleavages: 2 fixedModifications: [Carbamidomethyl (C)] variableModifications: [Oxidation (M)] enzymes: [Trypsin/P] enzymeMode: 0 labelMods: - [Arg6,Lys4] - [] - [Arg10,DimethLys8]