Mercurial > repos > galaxyp > maxquant
view test-data/07/config.yml @ 12:0839f84def5e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author | galaxyp |
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date | Sun, 20 Jun 2021 16:37:41 +0000 |
parents | d72c96ad9a16 |
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fastaFiles: [/tmp/tmpaa0pqa83/files/b/b/8/dataset_bb8c7384-70b6-410c-8efd-e0cfdf7cb971.dat] parseRules: identifierParseRule: '>([^\s]*)' descriptionParseRule: '>(.*)' minUniquePeptides: 0 minPepLen: 7 maxPeptideMass: 4600 calcPeakProperties: False writeMzTab: False separateLfq: False lfqStabilizeLargeRatios: True lfqRequireMsms: True advancedSiteIntensities: True matchBetweenRuns: False includeContaminants: True minPeptideLengthForUnspecificSearch: 8 maxPeptideLengthForUnspecificSearch: 25 decoyMode: revert peptideFdr: 0.01 proteinFdr: 0.01 quantMode: 1 restrictProteinQuantification: True restrictMods: [Oxidation (M),Acetyl (Protein N-term)] useCounterparts: True paramGroups: - files: ['tmt_data.mzXML'] maxMissedCleavages: 2 fixedModifications: [] variableModifications: [Oxidation (M)] enzymes: [Trypsin/P] enzymeMode: 0 lcmsRunType: 'Reporter ion MS2' reporterMassTolerance: 0.003 reporterPif: 0 reporterFraction: 0 reporterBasePeakRatio: 0 filterPif: False isobaricLabels: - [TMT10plex-Lys126C,TMT10plex-Nter126C,0,0,0,0,True] - [TMT10plex-Lys127N,TMT10plex-Nter127N,0,0,0,0,True] - [TMT10plex-Lys127C,TMT10plex-Nter127C,0,0,0,0,True] - [TMT10plex-Lys128N,TMT10plex-Nter128N,0,0,0,0,True] - [TMT10plex-Lys128C,TMT10plex-Nter128C,0,0,0,0,True] - [TMT10plex-Lys129N,TMT10plex-Nter129N,0,0,0,0,True] - [TMT10plex-Lys129C,TMT10plex-Nter129C,0,0,0,0,True] - [TMT10plex-Lys130N,TMT10plex-Nter130N,0,0,0,0,True] - [TMT10plex-Lys130C,TMT10plex-Nter130C,0,0,0,0,True] - [TMT10plex-Lys131N,TMT10plex-Nter131N,0,0,0,0,True]