Mercurial > repos > galaxyp > maxquant
view test-data/08/config.yml @ 12:0839f84def5e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author | galaxyp |
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date | Sun, 20 Jun 2021 16:37:41 +0000 |
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fastaFiles: [/tmp/tmpd7w978vs/files/0/f/c/dataset_0fc77a17-694f-4046-a911-98d071f76050.dat] parseRules: identifierParseRule: '>([^\s]*)' descriptionParseRule: '>(.*)' minUniquePeptides: 0 minPepLen: 7 maxPeptideMass: 4600 calcPeakProperties: False writeMzTab: False separateLfq: False lfqStabilizeLargeRatios: True lfqRequireMsms: True advancedSiteIntensities: True matchBetweenRuns: False includeContaminants: True minPeptideLengthForUnspecificSearch: 8 maxPeptideLengthForUnspecificSearch: 25 decoyMode: revert peptideFdr: 0.01 proteinFdr: 0.01 quantMode: 1 restrictProteinQuantification: True restrictMods: [Oxidation (M),Acetyl (Protein N-term)] useCounterparts: True paramGroups: - files: ['tmt_data.mzXML'] maxMissedCleavages: 2 fixedModifications: [] variableModifications: [Oxidation (M)] enzymes: [Trypsin/P] enzymeMode: 0 lcmsRunType: 'Reporter ion MS2' reporterMassTolerance: 0.003 reporterPif: 0 reporterFraction: 0 reporterBasePeakRatio: 0 filterPif: False isobaricLabels: - [TMTpro16plex-Lys127N,TMTpro16plex-Nter127N,0,0,0,0,True] - [TMTpro16plex-Lys127C,TMTpro16plex-Nter127C,0,0,0,0,True] - [TMTpro16plex-Lys128N,TMTpro16plex-Nter128N,0,0,0,0,True] - [TMTpro16plex-Lys128C,TMTpro16plex-Nter128C,0,0,0,0,True] - [TMTpro16plex-Lys129N,TMTpro16plex-Nter129N,0,0,0,0,True] - [TMTpro16plex-Lys129C,TMTpro16plex-Nter129C,0,0,0,0,True] - [TMTpro16plex-Lys130N,TMTpro16plex-Nter130N,0,0,0,0,True] - [TMTpro16plex-Lys130C,TMTpro16plex-Nter130C,0,0,0,0,True] - [TMTpro16plex-Lys131N,TMTpro16plex-Nter131N,0,0,0,0,True] - [TMTpro16plex-Lys131C,TMTpro16plex-Nter131C,0,0,0,0,True] - [TMTpro16plex-Lys132N,TMTpro16plex-Nter132N,0,0,0,0,True] - [TMTpro16plex-Lys132C,TMTpro16plex-Nter132C,0,0,0,0,True] - [TMTpro16plex-Lys133N,TMTpro16plex-Nter133N,0,0,0,0,True] - [TMTpro16plex-Lys133C,TMTpro16plex-Nter133C,0,0,0,0,True] - [TMTpro16plex-Lys134N,TMTpro16plex-Nter134N,0,0,0,0,True] - [TMTpro16plex-Lys126C,TMTpro16plex-Nter126C,0,0,0,0,True]