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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 80eb79844e82da22ce44a2ee9c9f202bed0b94d1
author galaxyp
date Fri, 22 Jul 2022 07:10:28 +0000
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GalaxyP - MaxQuant
==================


* Home: https://github.com/galaxyproteomics/tools-galaxyp/
* Tool ID: ``maxquant``
* Tool Type: ``default``

Description
-----------

Wrapper for the MaxQuant version available in conda.

Updating
--------

MaxQuant often changes the layout of its parameters file.
So changes to the code are likely to be necessary when
updating to a new version of MaxQuant. The init.py script
can be used to initialize the tool with a new list of
modifications or enzymes. From the tool dir run:

./init.py -m MODIFICATIONS.XML -e ENZYMES.XML

The location of these xml files usually is:
ANACONDA_DIR/bin/conf/