Mercurial > repos > galaxyp > maxquant
view test-data/02/config.yml @ 4:dcd39bcc7481 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author | galaxyp |
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date | Sat, 11 Apr 2020 11:49:19 -0400 |
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children | 2133b0be850a |
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fastaFiles: [/tmp/tmpQsmPD9/files/7/b/e/dataset_7be42b54-5eac-4f1d-a6bb-0b85e8f1bd67.dat] parseRules: identifierParseRule: '>([^\s]*)' descriptionParseRule: '>(.*)' minUniquePeptides: 0 minPepLen: 7 maxPeptideMass: 4600 calcPeakProperties: False writeMzTab: True separateLfq: False lfqStabilizeLargeRatios: True lfqRequireMsms: True advancedSiteIntensities: True matchBetweenRuns: False paramGroups: - files: ['BSA_min_23.mzXML'] maxMissedCleavages: 2 fixedModifications: [] variableModifications: [Oxidation (M)] enzymes: [Trypsin/P] lcmsRunType: 'Reporter ion MS2' reporterMassTolerance: 0.003 reporterPif: 0 reporterFraction: 0 reporterBasePeakRatio: 0 isobaricLabels: - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True] - ['TMT2plex-Lys127','TMT2plex-Nter127',0.0,0.0,0.0,0.0,True] - files: ['BSA_min_22.mzxml'] maxMissedCleavages: 2 fixedModifications: [] variableModifications: [] enzymes: [] lcmsRunType: 'Reporter ion MS2' reporterMassTolerance: 0.003 reporterPif: 0 reporterFraction: 0 reporterBasePeakRatio: 0 isobaricLabels: - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False] - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False] - [iTRAQ4plex-Lys116,iTRAQ4plex-Nter116,0,0,0,0,False] - [iTRAQ4plex-Lys117,iTRAQ4plex-Nter117,0,0,0,0,False]