Mercurial > repos > galaxyp > maxquant_mqpar

annotate test-data/txt/msms.txt @ 3:2d67fb758956 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author galaxyp
date Sat, 11 Apr 2020 11:50:09 -0400
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2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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1 Raw file Scan number Scan index Sequence Length Missed cleavages Modifications Modified sequence Oxidation (M) Probabilities Oxidation (M) Score diffs Acetyl (Protein N-term) Oxidation (M) Proteins Charge Fragmentation Mass analyzer Type Scan event number Isotope index m/z Mass Mass error [ppm] Mass error [Da] Simple mass error [ppm] Retention time PEP Score Delta score Score diff Localization prob Combinatorics PIF Fraction of total spectrum Base peak fraction Precursor full scan number Precursor Intensity Precursor apex fraction Precursor apex offset Precursor apex offset time Matches Intensities Mass deviations [Da] Mass deviations [ppm] Masses Number of matches Intensity coverage Peak coverage Neutral loss level ETD identification type Reverse All scores All sequences All modified sequences Reporter PIF Reporter fraction id Protein group IDs Peptide ID Mod. peptide ID Evidence ID Oxidation (M) site IDs
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
galaxyp
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2 BSA_min_21 85 69 AEFVEVTK 8 0 Unmodified _AEFVEVTK_ 0 0 CON__P02769;bsa 2 CID FTMS MULTI-SECPEP 1 0 461.74765 921.48075 0.05159 2.3822E-05 NaN 0.50044 0.010981 3.3922 3.3922 NaN NaN 1 0 0 0 84 8401.8173828125 1 0 0 b3 90 0.00372490351873012 10.6990826539628 348.151672363281 1 0.0187155550306724 0.00826446280991736 None Unknown 3.3921643866591;0 AEFVEVTK;LSVEAFEK _AEFVEVTK_;_LSVEAFEK_ 0 0 0 0 0
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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3 BSA_min_21 82 67 DDPHACYSTVFDK 13 0 Unmodified _DDPHACYSTVFDK_ 0 0 CON__P02769;bsa 2 CID FTMS MULTI-MSMS 4 0 777.83011 1553.6457 0.83472 0.00064927 NaN 0.48088 0.0081868 0 0 NaN NaN 1 0 0 0 78 14602.341796875 1 0 0 0 0 0 None Unknown 0 DDPHACYSTVFDK _DDPHACYSTVFDK_ 1 0 1 1 1
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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4 BSA_min_22 60 48 ECCHGDLLECADDR 14 0 Unmodified _ECCHGDLLECADDR_ 0 0 CON__P02769;bsa 3 CID FTMS MULTI-MSMS 2 1 583.89236 1748.6553 -1.2 -0.00070066 NaN 0.34278 0.011617 4.06 4.06 NaN NaN 1 0 0 0 58 153296.796875 1 0 0 y2;b7 100;60 0.000875681750017065;0.0151950483749488 3.01808299667453;17.4197737863645 290.14501953125;872.287353515625 2 0.0345694906307557 0.016260162601626 None Unknown 4.06002529511453 ECCHGDLLECADDR _ECCHGDLLECADDR_ 2 0 2 2 2
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
galaxyp
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5 BSA_min_22 67 53 ECCHGDLLECADDR 14 0 Unmodified _ECCHGDLLECADDR_ 0 0 CON__P02769;bsa 3 CID FTMS MULTI-MSMS 1 0 583.89236 1748.6553 -1.2 -0.00070066 NaN 0.3858 0.011617 0 0 NaN NaN 1 0 0 0 66 93077.6484375 0.590638368628048 -6 0.16876 0 0 0 None Unknown 0 ECCHGDLLECADDR _ECCHGDLLECADDR_ 3 0 2 2 2
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
galaxyp
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6 BSA_min_22 90 70 ECCHGDLLECADDR 14 0 Unmodified _ECCHGDLLECADDR_ 0 0 CON__P02769;bsa 2 CID FTMS MULTI-MSMS 2 0 875.3349 1748.6553 0.26945 0.00023586 NaN 0.52328 0.011617 3.6449 3.6449 NaN NaN 1 0 0 0 88 65524.953125 1 0 0 y10 80 -0.0168735156998991 -14.5021701256686 1163.5166015625 1 0.0263469586281723 0.00862068965517241 None Unknown 3.64492303257886 ECCHGDLLECADDR _ECCHGDLLECADDR_ 4 0 2 2 3
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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7 BSA_min_21 57 46 FNETTEK 7 0 Unmodified _FNETTEK_ 0 0 CON__REFSEQ:XP_585019 1 CID FTMS MULTI-SECPEP 3 0 868.40469 867.39741 1.5658 0.0013597 NaN 0.33417 0.0062991 0 0 NaN NaN 1 0 0 0 54 12854.5830078125 0.610546493461869 -2 0.0649316666666667 0 0 0 None Unknown 0 FNETTEK _FNETTEK_ 5 8 3 3 4
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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8 BSA_min_21 45 36 GCTTTNSPSTPCQNCSR 17 0 Unmodified _GCTTTNSPSTPCQNCSR_ 0 0 CON__Q6IFU6 2 CID FTMS MSMS 2 964.3882 1926.7618 NaN NaN NaN 0.26375 0.016056 0 0 NaN NaN 1 0 0 0 -1 NaN NaN 0 NaN 0 0 0 None Unknown 0 GCTTTNSPSTPCQNCSR _GCTTTNSPSTPCQNCSR_ 6 7 4 4 5
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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9 BSA_min_21 16 12 GETGPAGPSGAPGPAGSR 18 0 Unmodified _GETGPAGPSGAPGPAGSR_ 0 0 CON__P04258 3 CID FTMS MSMS 3 508.24634 1521.7172 NaN NaN NaN 0.091825 0.014811 0 0 NaN NaN 1 0 0 0 -1 NaN NaN 0 NaN a2 4 0.0013149045343539 8.2659354184025 159.075103759766 1 0.000881609535771964 0.00869565217391304 None Unknown 0;0 GETGPAGPSGAPGPAGSR;GSGAPGPAGSPGAPGTER _GETGPAGPSGAPGPAGSR_;_GSGAPGPAGSPGAPGTER_ 7 4 5 5 6
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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10 BSA_min_21 10 7 LGQYTSPVAK 10 0 Unmodified _LGQYTSPVAK_ 0 0 CON__P01030;CON__ENSEMBL:ENSBTAP00000007350 2 CID FTMS MSMS 3 532.29276 1062.571 NaN NaN NaN 0.057288 0.0086806 9.2141 9.2141 NaN NaN 1 0 0 0 -1 NaN NaN 0 NaN y3;b2;b4 10;20;200 -0.00279849649376729;-0.00340676689998531;-0.00711106876252643 -8.82191072988591;-19.9090833143192;-15.3838714608204 317.221130371094;171.1162109375;462.241821289063 3 0.0308188417439214 0.0245901639344262 None Unknown 9.21405366890568;0;0 LGQYTSPVAK;AQYELIAQK;AQYEIIAQK _LGQYTSPVAK_;_AQYELIAQK_;_AQYEIIAQK_ 8 1 6 6 7
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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11 BSA_min_21 67 54 TSDANINWNNLK 12 0 Unmodified _TSDANINWNNLK_ 0 0 CON__Q29443;CON__Q0IIK2 3 CID FTMS MULTI-MSMS 1 0 463.89676 1388.6684 0.2251 0.00010442 NaN 0.39389 0.0052683 0 0 NaN NaN 1 0 0 0 66 23524.845703125 0.459529453830584 -1 0.0348916666666667 0 0 0 None Unknown 0 TSDANINWNNLK _TSDANINWNNLK_ 9 6 7 7 8
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
galaxyp
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12 BSA_min_21 98 80 TSDANINWNNLK 12 0 Unmodified _TSDANINWNNLK_ 0 0 CON__Q29443;CON__Q0IIK2 3 CID FTMS MULTI-MSMS 5 1 463.89676 1388.6684 0.2251 0.00010442 NaN 0.57847 0.0052683 2.8669 2.8669 NaN NaN 1 0 0 0 93 7351.9912109375 0.14361227054852 4 NaN b9 6 -0.00485963613130025 -4.78099799382671 1016.44805908203 1 0.00268406539551173 0.00961538461538462 None Unknown 2.86688527480472 TSDANINWNNLK _TSDANINWNNLK_ 10 6 7 7 8
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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13 BSA_min_21 70 57 TSDANINWNNLK 12 0 Unmodified _TSDANINWNNLK_ 0 0 CON__Q29443;CON__Q0IIK2 2 CID FTMS MULTI-MSMS 4 0 695.3415 1388.6684 1.6082 0.0011183 NaN 0.41019 0.0052683 0 0 NaN NaN 1 0 0 0 66 16808.548828125 0.978200928418143 -1 0.0348916666666667 0 0 0 None Unknown 0;0 TSDANINWNNLK;HVFAVDGAGEMLK _TSDANINWNNLK_;_HVFAVDGAGEM(Oxidation (M))LK_ 11 6 7 7 9
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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14 BSA_min_22 48 39 VLDQYIFELSR 11 0 Unmodified _VLDQYIFELSR_ 0 0 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 2 CID FTMS MULTI-SECPEP 5 1 691.86936 1381.7242 3.4987 0.0024207 NaN 0.27297 0.01812 0 0 NaN NaN 1 0 0 0 43 22886.505859375 1 0 0 0 0 0 None Unknown 0 VLDQYIFELSR _VLDQYIFELSR_ 12 2 8 8 10
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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15 BSA_min_21 73 59 VLYDAEISQIHQSVTDTNVILSMDNSR 27 0 Unmodified _VLYDAEISQIHQSVTDTNVILSMDNSR_ 0 0 CON__P35908v2;CON__P35908 6 CID FTMS MULTI-SECPEP 1 -2 508.92177 3047.487 -0.028189 -1.4346E-05 NaN 0.42964 0.0020659 0 0 NaN NaN 1 0 0 0 72 23982.154296875 1 0 0 0 0 0 None Unknown 0;0 VLYDAEISQIHQSVTDTNVILSMDNSR;NTMVVHEPSAHIQVQPNEFTVEIWSR _VLYDAEISQIHQSVTDTNVILSMDNSR_;_NTMVVHEPSAHIQVQPNEFTVEIWSR_ 13 5 9 9 11
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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16 BSA_min_21 80 65 YCGVPGEYWLGNDR 14 0 Unmodified _YCGVPGEYWLGNDR_ 0 0 CON__P02676 3 CID FTMS MULTI-MSMS 2 0 562.58407 1684.7304 -0.095012 -5.3452E-05 NaN 0.46942 0.011617 0 0 NaN NaN 1 0 0 0 78 21744.55859375 0.743883342518387 -1 0.0342566666666667 0 0 0 None Unknown 0 YCGVPGEYWLGNDR _YCGVPGEYWLGNDR_ 14 3 10 10 12
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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17 BSA_min_21 92 75 YCGVPGEYWLGNDR 14 0 Unmodified _YCGVPGEYWLGNDR_ 0 0 CON__P02676 2 CID FTMS MULTI-MSMS 3 1 843.37247 1684.7304 1.6852 0.0014212 NaN 0.54095 0.011617 3.6449 3.6449 NaN NaN 1 0 0 0 89 10235.505859375 1 0 0 y13 5 0.01796629868727 11.7993127121924 1522.65637207031 1 0.00360499788750048 0.00961538461538462 None Unknown 3.64492303257886 YCGVPGEYWLGNDR _YCGVPGEYWLGNDR_ 15 3 10 10 13
2d67fb758956 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
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18 BSA_min_21 44 35 YICDNQDTISSK 12 0 Unmodified _YICDNQDTISSK_ 0 0 CON__P02769;bsa 2 CID FTMS MSMS 1 722.32466 1442.6348 NaN NaN NaN 0.25827 4.413E-09 24.343 7.7115 NaN NaN 1 0 0 0 -1 NaN NaN 0 NaN y3;y8;y9;y10;b9 300;200;500;700;30 -0.00453549397497;-0.0138762988750614;-0.0167184231250985;-0.0175643623499582;-0.0019145705750816 -14.1212848085697;-15.5485287132689;-16.594286035641;-15.0442644146915;-1.70415154482157 321.181396484375;892.450927734375;1007.48071289063;1167.51220703125;1123.47436523438 5 0.182617971514711 0.0357142857142857 None Unknown 24.3433433825462;16.6318347984703 YICDNQDTISSK;YICENQDSISSK _YICDNQDTISSK_;_YICENQDSISSK_ 16 0 11 11 14