Mercurial > repos > galaxyp > maxquant_mqpar

comparison README.md @ 3:2d67fb758956 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author galaxyp
date Sat, 11 Apr 2020 11:50:09 -0400
parents 256cc0e17454
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2:3fc2116ac6d9 3:2d67fb758956
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9 Description 9 Description
10 ----------- 10 -----------
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12 Wrapper for the MaxQuant version available in conda. 12 Wrapper for the MaxQuant version available in conda.
13 It is based on parts of the 'maxquant'-tool which
14 must be placed in the same tool directory as this tool.
13 15
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15 Updating 17 Updating
16 -------- 18 --------
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18 MaxQuant often changes the layout of its parameters file. 20 For informations on updating see '../maxquant/README.md'.
19 So changes to the code are likely to be necessary when
20 updating to a new version of MaxQuant. The init.py script
21 can be used to initialize the tool with a new list of
22 modifications or enzymes. From the tool dir run:
23
24 ./init.py -m MODIFICATIONS.XML -e ENZYMES.XML
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26 The location of these xml files usually is:
27 ANACONDA_DIR/bin/conf/