Mercurial > repos > galaxyp > maxquant_mqpar

comparison maxquant_mqpar.xml @ 2:3fc2116ac6d9 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 74b5aa29e49deaaebe19ce2355a70d4f570f4951"
author galaxyp
date Thu, 15 Aug 2019 08:09:38 -0400
parents 256cc0e17454
children 2d67fb758956
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1:26693e21c3c8 2:3fc2116ac6d9
173 173
174 **Input files** 174 **Input files**
175 175
176 - Thermo raw file or mzXML file 176 - Thermo raw file or mzXML file
177 - The datatype has to be 'thermo.raw' or 'mzXML'. Make sure to specify the correct datatype either during upload to Galaxy or afterwards (edit attributes --> datatypes) 177 - The datatype has to be 'thermo.raw' or 'mzXML'. Make sure to specify the correct datatype either during upload to Galaxy or afterwards (edit attributes --> datatypes)
178 - Optional files: 178 - mqpar.xml:
179 - mqpar.xml: 179 - MaxQuant parameters will be taken from the provided mqpar.xml file. This parameter file MUST be created using the same version of MaxQuant as is used by this tool. The correct version of MaxQuant can be obtained via the bioconda channel for the conda package manager.
180 - MaxQuant parameters will be taken from the provided mqpar.xml file. This parameter file MUST be created using the same version of MaxQuant as is used by this tool. The correct version of MaxQuant can be obtained via the bioconda channel for the conda package manager.
181 180
182 **Output files** 181 **Output files**
183 182
184 Different output file options are available, most of them are part of the MaxQuant txt folder. An additional mztab output option is implemented. 183 Different output file options are available, most of them are part of the MaxQuant txt folder. An additional mztab output option is implemented.
185 ]]></help> 184 ]]></help>