Mercurial > repos > galaxyp > maxquant_mqpar
diff test-data/two/combined/txt/mzTab.mzTab @ 0:256cc0e17454 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit ab4e4f1817080cbe8a031a82cb180610ff140847
| author | galaxyp |
|---|---|
| date | Sat, 20 Jul 2019 04:53:23 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/two/combined/txt/mzTab.mzTab Sat Jul 20 04:53:23 2019 -0400 @@ -0,0 +1,55 @@ +MTD mzTab-version 1.0.0 +MTD mzTab-mode Complete +MTD mzTab-type Identification +MTD title null +MTD description null +MTD software[1] [MS, MS:1001583, MaxQuant,1.6.3.4] +COM [, CHEMMOD:57.0214637236, Carbamidomethyl (C),] +MTD fixed_mod[1] [, , CHEMMOD:57.0214637236,] +MTD fixed_mod[1]-site C +MTD fixed_mod[1]-position Anywhere +COM [, CHEMMOD:15.9949146221, Oxidation (M),] +MTD variable_mod[1] [, , CHEMMOD:15.9949146221,] +MTD variable_mod[1]-site M +MTD variable_mod[1]-position Anywhere +MTD protein_search_engine_score[1] [MS, MS:1002375, protein group-level combined FDRscore, ] +MTD peptide_search_engine_score[1] [MS, MS:1001250, local FDR, ] +MTD psm_search_engine_score[1] [MS, MS:1002338, Andromeda:score, ] +MTD psm_search_engine_score[2] [MS, MS:1002995, Andromeda:PEP, ] +MTD ms_run[1]-format [MS, MS:1002996, Andromeda:apl file format, ] +MTD ms_run[1]-location file://d:/shared/dglaetzer/maxquant_tool/test2/two_mzxml_short/combined/andromeda/allspectra.cid.ftms.iso_0.apl +MTD ms_run[1]-id_format [MS, MS:1000776, scan number only nativeID format, ] +MTD ms_run[2]-format [MS, MS:1002996, Andromeda:apl file format, ] +MTD ms_run[2]-location file://d:/shared/dglaetzer/maxquant_tool/test2/two_mzxml_short/combined/andromeda/allspectra.cid.ftms.iso_1.apl +MTD ms_run[2]-id_format [MS, MS:1000776, scan number only nativeID format, ] + +PRH accession description taxid species database database_version search_engine best_search_engine_score[1] search_engine_score[1]_ms_run[1] search_engine_score[1]_ms_run[2] num_psms_ms_run[1] num_psms_ms_run[2] num_peptides_distinct_ms_run[1] num_peptides_distinct_ms_run[2] num_peptides_unique_ms_run[1] num_peptides_unique_ms_run[2] ambiguity_members modifications protein_coverage opt_global_cv_MS:1002217_decoy_peptide +PRT CON__P02769 null null null null null [MS, MS:1002337, Andromeda, 1.6.3.4] 24.4111732500507 null null null null null null null null CON__P02769, bsa null 0.064 0 +PRT CON__P01030 null null null null null [MS, MS:1002337, Andromeda, 1.6.3.4] 6.12946896793655 null null null null null null null null CON__P01030, CON__ENSEMBL:ENSBTAP00000007350 null 0.006 0 +PRT CON__P02676 null null null null null [MS, MS:1002337, Andromeda, 1.6.3.4] 5.91168885522525 null null null null null null null null CON__P02676 null 0.028 0 +PRT CON__Q29443 null null null null null [MS, MS:1002337, Andromeda, 1.6.3.4] 6.27089675212204 null null null null null null null null CON__Q29443, CON__Q0IIK2 null 0.018 0 +PRT CON__Q6IFU6 null null null null null [MS, MS:1002337, Andromeda, 1.6.3.4] 5.79558497906794 null null null null null null null null CON__Q6IFU6 null 0.035 0 + +PSH sequence PSM_ID accession unique database database_version search_engine search_engine_score[1] search_engine_score[2] modifications retention_time charge exp_mass_to_charge calc_mass_to_charge spectra_ref pre post start end opt_global_cv_MS:1000776_scan_number_only_nativeID_format opt_global_cv_MS:1002217_decoy_peptide +PSM DDPHACYSTVFDK 1 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.00879376465973971 null 0.480878333333333 2 777.83 777.83011 ms_run[1]:index=121 K L 387 399 82 0 +PSM DDPHACYSTVFDK 1 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.00879376465973971 null 0.480878333333333 2 777.83 777.83011 ms_run[1]:index=121 K L 387 399 82 0 +PSM ECCHGDLLECADDR 2 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 4.06002529511453 0.0122549387437507 null 0.342775 3 583.89 583.89236 ms_run[1]:index=147 K A 267 280 60 0 +PSM ECCHGDLLECADDR 2 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 4.06002529511453 0.0122549387437507 null 0.342775 3 583.89 583.89236 ms_run[1]:index=147 K A 267 280 60 0 +PSM ECCHGDLLECADDR 3 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.0122549387437507 null 0.385801666666667 3 583.89 583.89236 ms_run[1]:index=146 K A 267 280 67 0 +PSM ECCHGDLLECADDR 3 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.0122549387437507 null 0.385801666666667 3 583.89 583.89236 ms_run[1]:index=146 K A 267 280 67 0 +PSM ECCHGDLLECADDR 4 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 3.64492303257886 0.0122549387437507 null 0.523276666666667 2 875.34 875.3349 ms_run[1]:index=148 K A 267 280 90 0 +PSM ECCHGDLLECADDR 4 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 3.64492303257886 0.0122549387437507 null 0.523276666666667 2 875.34 875.3349 ms_run[1]:index=148 K A 267 280 90 0 +PSM GCTTTNSPSTPCQNCSR 5 CON__Q6IFU6 1 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.0160108733047593 null 0.263751666666667 2 964.38 964.3882 ms_run[1]:index=170 K I 5 21 45 0 +PSM LGQYTSPVAK 6 CON__P01030 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 9.21405366890568 0.00742217230209436 null 0.0572883333333333 2 532.29 532.29276 ms_run[1]:index=35 K R 689 698 10 0 +PSM LGQYTSPVAK 6 CON__ENSEMBL:ENSBTAP00000007350 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 9.21405366890568 0.00742217230209436 null 0.0572883333333333 2 532.29 532.29276 ms_run[1]:index=35 K R 689 698 10 0 +PSM TSDANINWNNLK 7 CON__Q29443 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.00535924051359045 null 0.393891666666667 3 463.9 463.89676 ms_run[1]:index=84 K D 438 449 67 0 +PSM TSDANINWNNLK 7 CON__Q0IIK2 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.00535924051359045 null 0.393891666666667 3 463.9 463.89676 ms_run[1]:index=84 K D 438 449 67 0 +PSM TSDANINWNNLK 8 CON__Q29443 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 2.86688527480472 0.00535924051359045 null 0.578475 3 463.9 463.89676 ms_run[1]:index=85 K D 438 449 98 0 +PSM TSDANINWNNLK 8 CON__Q0IIK2 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 2.86688527480472 0.00535924051359045 null 0.578475 3 463.9 463.89676 ms_run[1]:index=85 K D 438 449 98 0 +PSM TSDANINWNNLK 9 CON__Q29443 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.00535924051359045 null 0.41019 2 695.34 695.3415 ms_run[1]:index=86 K D 438 449 70 0 +PSM TSDANINWNNLK 9 CON__Q0IIK2 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.00535924051359045 null 0.41019 2 695.34 695.3415 ms_run[1]:index=86 K D 438 449 70 0 +PSM YCGVPGEYWLGNDR 10 CON__P02676 1 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 0 0.0122549387437507 null 0.469416666666667 3 562.58 562.58407 ms_run[1]:index=140 K I 319 332 80 0 +PSM YCGVPGEYWLGNDR 11 CON__P02676 1 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 3.64492303257886 0.0122549387437507 null 0.540946666666667 2 843.37 843.37247 ms_run[1]:index=141 K I 319 332 92 0 +PSM YICDNQDTISSK 12 CON__P02769 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 24.3433433825462 3.60031720952497E-09 null 0.258266666666667 2 722.33 722.32466 ms_run[1]:index=94 K L 286 297 44 0 +PSM YICDNQDTISSK 12 bsa 0 null null [MS, MS:1002338, Andromeda:score, 1.6.3.4] 24.3433433825462 3.60031720952497E-09 null 0.258266666666667 2 722.33 722.32466 ms_run[1]:index=94 K L 286 297 44 0 +