Mercurial > repos > galaxyp > maxquant_mqpar
diff test-data/txt/evidence.txt @ 3:2d67fb758956 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author | galaxyp |
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date | Sat, 11 Apr 2020 11:50:09 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/txt/evidence.txt Sat Apr 11 11:50:09 2020 -0400 @@ -0,0 +1,16 @@ +Sequence Length Modifications Modified sequence Oxidation (M) Probabilities Oxidation (M) Score Diffs Acetyl (Protein N-term) Oxidation (M) Missed cleavages Proteins Leading proteins Leading razor protein Type Raw file MS/MS m/z Charge m/z Mass Resolution Uncalibrated - Calibrated m/z [ppm] Uncalibrated - Calibrated m/z [Da] Mass error [ppm] Mass error [Da] Uncalibrated mass error [ppm] Uncalibrated mass error [Da] Max intensity m/z 0 Retention time Retention length Calibrated retention time Calibrated retention time start Calibrated retention time finish Retention time calibration Match time difference Match m/z difference Match q-value Match score Number of data points Number of scans Number of isotopic peaks PIF Fraction of total spectrum Base peak fraction PEP MS/MS count MS/MS scan number Score Delta score Combinatorics Intensity Reporter PIF Reporter fraction Reverse Potential contaminant id Protein group IDs Peptide ID Mod. peptide ID MS/MS IDs Best MS/MS Oxidation (M) site IDs +AEFVEVTK 8 Unmodified _AEFVEVTK_ 0 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MULTI-SECPEP BSA_min_21 461.747985839844 2 461.74765 921.480748 NaN 0 0 0.05159 2.3822E-05 0.05159 2.3822E-05 461.747684636513 0.52947 0.23399 0.52947 0.3685 0.60249 0 14 6 3 0 0 0 0.010981 1 85 3.3922 3.3922 1 43020 + 0 0 0 0 0 0 +DDPHACYSTVFDK 13 Unmodified _DDPHACYSTVFDK_ 0 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MULTI-MSMS BSA_min_21 777.835021972656 2 777.830105 1553.64566 NaN 0 0 0.83472 0.00064927 0.83472 0.00064927 777.830735936543 0.47149 0.26748 0.47149 0.29786 0.56534 0 10 7 2 0 0 0 0.0081868 1 82 0 0 1 32419 + 1 0 1 1 1 1 +ECCHGDLLECADDR 14 Unmodified _ECCHGDLLECADDR_ 0 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MULTI-MSMS BSA_min_22 584.229736328125 3 583.892361 1748.65525 NaN 0 0 -1.2 -0.00070066 -1.2 -0.00070066 583.891878608632 0.42243 0.40142 0.42243 0.19137 0.59279 0 52 16 4 0 0 0 0.011617 2 60 4.06 4.06 1 339840 + 2 0 2 2 2;3 2 +ECCHGDLLECADDR 14 Unmodified _ECCHGDLLECADDR_ 0 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MULTI-MSMS BSA_min_22 875.332336425781 2 875.334903 1748.65525 NaN 0 0 0.26945 0.00023586 0.26945 0.00023586 875.335151892134 0.508 0.18103 0.508 0.41176 0.59279 0 16 8 3 0 0 0 0.011617 1 90 3.6449 3.6449 1 145520 + 3 0 2 2 4 4 +FNETTEK 7 Unmodified _FNETTEK_ 0 0 0 CON__REFSEQ:XP_585019 CON__REFSEQ:XP_585019 CON__REFSEQ:XP_585019 MULTI-SECPEP BSA_min_21 868.867431640625 1 868.404689 867.397412 NaN 0 0 1.5658 0.0013597 1.5658 0.0013597 868.405948529351 0.54676 0.26937 0.54676 0.33312 0.60249 0 14 7 2 0 0 0 0.0062991 1 57 0 0 1 40514 + 4 8 3 3 5 5 +GCTTTNSPSTPCQNCSR 17 Unmodified _GCTTTNSPSTPCQNCSR_ 0 0 0 CON__Q6IFU6 CON__Q6IFU6 CON__Q6IFU6 MSMS BSA_min_21 964.384521484375 2 964.388198 1926.76184 NaN NaN NaN NaN NaN NaN NaN NaN 0.26375 1 0.26375 -0.23625 0.76375 0 0 0 0 0.016056 1 45 0 0 1 + 5 7 4 4 6 6 +GETGPAGPSGAPGPAGSR 18 Unmodified _GETGPAGPSGAPGPAGSR_ 0 0 0 CON__P04258 CON__P04258 CON__P04258 MSMS BSA_min_21 508.24755859375 3 508.246338 1521.71718 NaN NaN NaN NaN NaN NaN NaN NaN 0.091825 1 0.091825 -0.40818 0.59183 0 0 0 0 0.014811 1 16 0 0 1 + 6 4 5 5 7 7 +LGQYTSPVAK 10 Unmodified _LGQYTSPVAK_ 0 0 0 CON__P01030;CON__ENSEMBL:ENSBTAP00000007350 CON__P01030 CON__P01030 MSMS BSA_min_21 532.293029785156 2 532.292756 1062.57096 NaN NaN NaN NaN NaN NaN NaN NaN 0.057288 1 0.057288 -0.44271 0.55729 6.9389E-18 0 0 0 0.0086806 1 10 9.2141 9.2141 1 + 7 1 6 6 8 8 +TSDANINWNNLK 12 Unmodified _TSDANINWNNLK_ 0 0 0 CON__Q29443;CON__Q0IIK2 CON__Q29443 CON__Q29443 MULTI-MSMS BSA_min_21 463.896636962891 3 463.896757 1388.66844 NaN 0 0 0.2251 0.00010442 0.2251 0.00010442 463.896829521798 0.42161 0.33709 0.42161 0.2654 0.60249 0 18 9 3 0 0 0 0.0052683 2 67 2.8669 2.8669 1 99326 + 8 6 7 7 9;10 9 +TSDANINWNNLK 12 Unmodified _TSDANINWNNLK_ 0 0 0 CON__Q29443;CON__Q0IIK2 CON__Q29443 CON__Q29443 MULTI-MSMS BSA_min_21 695.341064453125 2 695.341498 1388.66844 NaN 0 0 1.6082 0.0011183 1.6082 0.0011183 695.342847214244 0.40624 0.23684 0.40624 0.29786 0.5347 -5.5511E-17 11 6 2 0 0 0 0.0052683 1 70 0 0 1 38250 + 9 6 7 7 11 11 +VLDQYIFELSR 11 Unmodified _VLDQYIFELSR_ 0 0 0 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 CON__Q3MHN5 CON__Q3MHN5 MULTI-SECPEP BSA_min_22 692.368225097656 2 691.86936 1381.72417 NaN 0 0 3.4987 0.0024207 3.4987 0.0024207 691.872041785377 0.50384 0.436 0.50384 0.15679 0.59279 0 27 17 2 0 0 0 0.01812 1 48 0 0 1 89423 + 10 2 8 8 12 12 +VLYDAEISQIHQSVTDTNVILSMDNSR 27 Unmodified _VLYDAEISQIHQSVTDTNVILSMDNSR_ 0 0 0 CON__P35908v2;CON__P35908 CON__P35908v2 CON__P35908v2 MULTI-SECPEP BSA_min_21 508.586730957031 6 508.921773 3047.48698 NaN 0 0 -0.028189 -1.4346E-05 -0.028189 -1.4346E-05 509.256120722166 0.35628 0.17335 0.35628 0.2654 0.43874 0 6 4 2 0 0 0 0.0020659 1 73 0 0 1 26948 + 11 5 9 9 13 13 +YCGVPGEYWLGNDR 14 Unmodified _YCGVPGEYWLGNDR_ 0 0 0 CON__P02676 CON__P02676 CON__P02676 MULTI-MSMS BSA_min_21 562.586242675781 3 562.584073 1684.73039 NaN 0 0 -0.095012 -5.3452E-05 -0.095012 -5.3452E-05 562.584772670959 0.49991 0.26937 0.49991 0.33312 0.60249 0 23 7 4 0 0 0 0.011617 1 80 0 0 1 78017 + 12 3 10 10 14 14 +YCGVPGEYWLGNDR 14 Unmodified _YCGVPGEYWLGNDR_ 0 0 0 CON__P02676 CON__P02676 CON__P02676 MULTI-MSMS BSA_min_21 843.877807617188 2 843.372472 1684.73039 NaN 0 0 1.6852 0.0014212 1.6852 0.0014212 843.374714279736 0.52265 0.19871 0.52265 0.40378 0.60249 0 16 5 4 0 0 0 0.011617 1 92 3.6449 3.6449 1 36308 + 13 3 10 10 15 15 +YICDNQDTISSK 12 Unmodified _YICDNQDTISSK_ 0 0 0 CON__P02769;bsa CON__P02769 CON__P02769 MSMS BSA_min_21 722.326232910156 2 722.324656 1442.63476 NaN NaN NaN NaN NaN NaN NaN NaN 0.25827 1 0.25827 -0.24173 0.75827 0 0 0 0 4.413E-09 1 44 24.343 7.7115 1 + 14 0 11 11 16 16