diff test-data/txt/peptides.txt @ 3:2d67fb758956 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit da342a782ccc391b87fb4fead956b7b3cbd21258"
author galaxyp
date Sat, 11 Apr 2020 11:50:09 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/txt/peptides.txt	Sat Apr 11 11:50:09 2020 -0400
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+Sequence	N-term cleavage window	C-term cleavage window	Amino acid before	First amino acid	Second amino acid	Second last amino acid	Last amino acid	Amino acid after	A Count	R Count	N Count	D Count	C Count	Q Count	E Count	G Count	H Count	I Count	L Count	K Count	M Count	F Count	P Count	S Count	T Count	W Count	Y Count	V Count	U Count	O Count	Length	Missed cleavages	Mass	Proteins	Leading razor protein	Start position	End position	Unique (Groups)	Unique (Proteins)	Charges	PEP	Score	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	MS/MS Count
+AEFVEVTK	LKAWSVARLSQKFPKAEFVEVTKLVTDLTK	LSQKFPKAEFVEVTKLVTDLTKVHKECCHG	K	A	E	T	K	L	1	0	0	0	0	0	2	0	0	0	0	1	0	1	0	0	1	0	0	2	0	0	8	0	921.48075	CON__P02769;bsa	CON__P02769	249	256	yes	no	2	0.010981	3.3922	43020		+	0	0	0	0	0	0		0
+DDPHACYSTVFDK	LAKEYEATLEECCAKDDPHACYSTVFDKLK	AKDDPHACYSTVFDKLKHLVDEPQNLIKQN	K	D	D	D	K	L	1	0	0	3	1	0	0	0	1	0	0	1	0	1	1	1	1	0	1	1	0	0	13	0	1553.6457	CON__P02769;bsa	CON__P02769	387	399	yes	no	2	0.0081868	0	32419		+	1	0	1	1	1	1		1
+ECCHGDLLECADDR	VEVTKLVTDLTKVHKECCHGDLLECADDRA	KECCHGDLLECADDRADLAKYICDNQDTIS	K	E	C	D	R	A	1	1	0	3	3	0	2	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	14	0	1748.6553	CON__P02769;bsa	CON__P02769	267	280	yes	no	2;3	0.011617	4.06	485350		+	2	0	2	2;3	2;3;4	2		3
+FNETTEK	NMENPPECYRHAENRFNETTEKSLKIVQRE	CYRHAENRFNETTEKSLKIVQRECEHFQNL	R	F	N	E	K	S	0	0	1	0	0	0	2	0	0	0	0	1	0	1	0	0	2	0	0	0	0	0	7	0	867.39741	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	401	407	yes	yes	1	0.0062991	0	40514		+	3	8	3	4	5	5		0
+GCTTTNSPSTPCQNCSR	______________________________	TTTNSPSTPCQNCSRITNVSTISSNNGCHP	K	G	C	S	R	I	0	1	2	0	3	1	0	1	0	0	0	0	0	0	2	3	4	0	0	0	0	0	17	0	1926.7618	CON__Q6IFU6	CON__Q6IFU6	5	21	yes	yes	2	0.016056	0	0		+	4	7	4	5	6	6		1
+GETGPAGPSGAPGPAGSR	GPPGPVGPAGKSGDRGETGPAGPSGAPGPA	GPAGPSGAPGPAGSRGPPGPQGPRGDKGET	R	G	E	S	R	G	3	1	0	0	0	0	1	6	0	0	0	0	0	0	4	2	1	0	0	0	0	0	18	0	1521.7172	CON__P04258	CON__P04258	1065	1082	yes	yes	3	0.014811	0	0		+	5	4	5	6	7	7		1
+LGQYTSPVAK	RKKRNVNFQKAIHEKLGQYTSPVAKRCCQD	AIHEKLGQYTSPVAKRCCQDGLTRLPMART	K	L	G	A	K	R	1	0	0	0	0	1	0	1	0	0	1	1	0	0	1	1	1	0	1	1	0	0	10	0	1062.571	CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	689	698	yes	no	2	0.0086806	9.2141	0		+	6	1	6	7	8	8		1
+TSDANINWNNLK	KNTPEKGYLAVAVVKTSDANINWNNLKDKK	VVKTSDANINWNNLKDKKSCHTAVDRTAGW	K	T	S	L	K	D	1	0	4	1	0	0	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	0	12	0	1388.6684	CON__Q29443;CON__Q0IIK2	CON__Q29443	438	449	yes	no	2;3	0.0052683	2.8669	137580		+	7	6	7	8;9	9;10;11	9		3
+VLDQYIFELSR	KLPMNKDVCDEGNTKVLDQYIFELSRKTQI	GNTKVLDQYIFELSRKTQIPEVFLTKILES	K	V	L	S	R	K	0	1	0	1	0	1	1	0	0	1	2	0	0	1	0	1	0	0	1	1	0	0	11	0	1381.7242	CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229	CON__Q3MHN5	341	351	yes	no	2	0.01812	0	89423		+	8	2	8	10	12	12		0
+VLYDAEISQIHQSVTDTNVILSMDNSR	QSKVDLLNQEIEFLKVLYDAEISQIHQSVT	SVTDTNVILSMDNSRNLDLDSIIAEVKAQY	K	V	L	S	R	N	1	1	2	3	0	2	1	0	1	3	2	0	1	0	0	4	2	0	1	3	0	0	27	0	3047.487	CON__P35908v2;CON__P35908	CON__P35908v2	315	341	yes	no	6	0.0020659	0	26948		+	9	5	9	11	13	13		0
+YCGVPGEYWLGNDR	KQGFGNIATNAEGKKYCGVPGEYWLGNDRI	KYCGVPGEYWLGNDRISQLTNMGPTKLLIE	K	Y	C	D	R	I	0	1	1	1	1	0	1	3	0	0	1	0	0	0	1	0	0	1	2	1	0	0	14	0	1684.7304	CON__P02676	CON__P02676	319	332	yes	yes	2;3	0.011617	3.6449	114330		+	10	3	10	12;13	14;15	14		2
+YICDNQDTISSK	GDLLECADDRADLAKYICDNQDTISSKLKE	LAKYICDNQDTISSKLKECCDKPLLEKSHC	K	Y	I	S	K	L	0	0	1	2	1	1	0	0	0	2	0	1	0	0	0	2	1	0	1	0	0	0	12	0	1442.6348	CON__P02769;bsa	CON__P02769	286	297	yes	no	2	4.413E-09	24.343	0		+	11	0	11	14	16	16		1