# HG changeset patch
# User galaxyp
# Date 1565870978 14400
# Node ID 3fc2116ac6d9bca22b4eba7298ed73797fe7378b
# Parent  26693e21c3c85e4f1096724aac4d74457c8f05ef
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 74b5aa29e49deaaebe19ce2355a70d4f570f4951"

diff -r 26693e21c3c8 -r 3fc2116ac6d9 init.py
--- a/init.py	Wed Aug 07 10:50:29 2019 -0400
+++ b/init.py	Thu Aug 15 08:09:38 2019 -0400
@@ -45,8 +45,7 @@
     standard_mods = []
     label_mods = []
     for m in mods:
-        if (m.findtext('type') == 'Standard'
-            or m.findtext('type') == 'AaSubstitution'):
+        if (m.findtext('type') == 'Standard' or m.findtext('type') == 'AaSubstitution'):
             standard_mods.append(m.get('title'))
         elif m.findtext('type') == 'Label':
             label_mods.append(m.get('title'))
diff -r 26693e21c3c8 -r 3fc2116ac6d9 maxquant_mqpar.xml
--- a/maxquant_mqpar.xml	Wed Aug 07 10:50:29 2019 -0400
+++ b/maxquant_mqpar.xml	Thu Aug 15 08:09:38 2019 -0400
@@ -175,9 +175,8 @@
 
 - Thermo raw file or mzXML file
     - The datatype has to be 'thermo.raw' or 'mzXML'. Make sure to specify the correct datatype either during upload to Galaxy or afterwards (edit attributes --> datatypes)
-- Optional files:
-    - mqpar.xml: 
-        - MaxQuant parameters will be taken from the provided mqpar.xml file. This parameter file MUST be created using the same version of MaxQuant as is used by this tool. The correct version of MaxQuant can be obtained via the bioconda channel for the conda package manager.
+- mqpar.xml: 
+    - MaxQuant parameters will be taken from the provided mqpar.xml file. This parameter file MUST be created using the same version of MaxQuant as is used by this tool. The correct version of MaxQuant can be obtained via the bioconda channel for the conda package manager.
 
 **Output files**