Mercurial > repos > galaxyp > meta_proteome_analyzer

comparison meta_proteome_analyzer.xml @ 3:d8d23dfcf68b draft default tip

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/meta_proteome_analyzer commit 681518afc38787fd942ce201938c12c1dcdab1d1"
author galaxyp
date Sun, 03 Jan 2021 20:30:24 +0000
parents ad3e9fdeabb7
children
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2:ad3e9fdeabb7 3:d8d23dfcf68b
2 <description> 2 <description>
3 functional and taxonomic characterization of proteins 3 functional and taxonomic characterization of proteins
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <token name="@TOOL_VERSION@">2.0.0</token> 6 <token name="@TOOL_VERSION@">2.0.0</token>
7 <token name="@WRAPPER_VERSION@">0</token> 7 <token name="@WRAPPER_VERSION@">1</token>
8 <xml name="test_output" token_name="" token_has_text=""> 8 <xml name="test_output" token_name="" token_has_text="">
9 <output name="output_PSMs"> 9 <output name="output_PSMs">
10 <assert_contents> 10 <assert_contents>
11 <has_text text="A2SPK1" /> 11 <has_text text="A2SPK1" />
12 </assert_contents> 12 </assert_contents>
16 </macros> 16 </macros>
17 <requirements> 17 <requirements>
18 <requirement type="package" version="@TOOL_VERSION@">mpa-portable</requirement> 18 <requirement type="package" version="@TOOL_VERSION@">mpa-portable</requirement>
19 </requirements> 19 </requirements>
20 <stdio> 20 <stdio>
21 <regex match="Could not allocate metaspace" source="both" level="fatal_oom" description="Low space on device" /> 21 <regex match="Could not allocate metaspace" source="both" level="fatal_oom" description="Insufficient memory" />
22 <regex match="OutOfMemoryError" source="both" level="fatal_oom" description="Insufficient memory" />
23
22 </stdio> 24 </stdio>
23 <command detect_errors="exit_code"> 25 <command detect_errors="exit_code">
24 <![CDATA[ 26 <![CDATA[
25 mkdir -p output_dir && 27 mkdir -p output_dir &&
26 ## copy mpa conf dir to working dir 28 ## copy mpa conf dir to working dir