Mercurial > repos > galaxyp > metaquantome_db

comparison macros.xml @ 0:f1834b310c09 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit d45eb2747cc58e1120b3935f10ab47c4e0f8f44a
author galaxyp
date Thu, 25 Apr 2019 13:47:16 -0400
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children 7c45aa1c9464
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-1:000000000000 0:f1834b310c09
1 <macros>
2 <token name="@VERSION@">1.0.0</token>
3 <token name="@GVERSION@">1.0.0-0</token>
4 <xml name="requirements">
5 <requirements>
6 <requirement type="package" version="@VERSION@">metaquantome</requirement>
7 <yield/>
8 </requirements>
9 </xml>
10 <xml name="db">
11 <param argument="db_tar" type="data" label="Database Archive File"/>
12 </xml>
13 <xml name="ONTOLOGY_ARGS">
14 <conditional name="ontology_args">
15 <param name="ontology" type="select" label="Ontology">
16 <option value="go">Gene Ontology (GO terms)</option>
17 <option value="ec">Enzyme Commission (EC) numbers</option>
18 <option value="cog">Clusters of Orthologous Groups (COG categories)</option>
19 </param>
20 <when value="go">
21 <param argument="--slim_down" type="boolean" label="Use slim GO"/>
22 </when>
23 <when value="ec">
24 <!-- do nothing -->
25 </when>
26 <when value="cog">
27 <!-- do nothing -->
28 </when>
29 </conditional>
30 </xml>
31 <token name="@COMMON_PARAMS@"><![CDATA[
32 --samps '$samps'
33 --mode '$mode_args.mode'
34 #if $mode_args.mode == 'f'
35 --ontology='$mode_args.ontology_args.ontology'
36 #end if
37 #if $mode_args.mode == 'ft'
38 --ontology='$mode_args.ontology_args.ontology'
39 #end if
40 ]]>
41 </token>
42 <xml name="SAMPS">
43 <param name="samps" type="data" format="tabular" label="Samples file"
44 help="must be created by 'metaQuantome: create samples file'"/>
45 </xml>
46 <xml name="citations">
47 <citations>
48 <yield />
49 </citations>
50 </xml>
51 </macros>