Mercurial > repos > galaxyp > metaquantome_stat

comparison metaquantome_stat.xml @ 1:982a442a98dd draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/metaquantome commit 74c403057350af3dde81aea154414a0d6a84d2a3"
author galaxyp
date Wed, 23 Sep 2020 17:02:11 +0000
parents 020a9ecdc1e1
children d46d64e7964d
comparison
equal deleted inserted replaced
0:020a9ecdc1e1 1:982a442a98dd
10 --mode '$mode_args.mode' 10 --mode '$mode_args.mode'
11 #if $mode_args.mode == 'f' or $mode_args.mode == 'ft' 11 #if $mode_args.mode == 'f' or $mode_args.mode == 'ft'
12 --ontology='$mode_args.ontology_args.ontology' 12 --ontology='$mode_args.ontology_args.ontology'
13 #end if 13 #end if
14 --file '$file' 14 --file '$file'
15 --control_group '$control_group'
15 --parametric '$parametric' 16 --parametric '$parametric'
16 $paired 17 $paired
17 --outfile='$outfile' 18 --outfile='$outfile'
18 ]]></command> 19 ]]></command>
19 <inputs> 20 <inputs>
33 </when> 34 </when>
34 <when value="ft"> 35 <when value="ft">
35 <expand macro="ONTOLOGY_ARGS"/> 36 <expand macro="ONTOLOGY_ARGS"/>
36 </when> 37 </when>
37 </conditional> 38 </conditional>
39 <param argument="--control_group" type="text" label="Name of the control sample group of control (used as denominator for fold change evaluation).">
40 <validator type="empty_field"/>
41 </param>
38 <param argument="--parametric" type="select" label="Statistical test to perform"> 42 <param argument="--parametric" type="select" label="Statistical test to perform">
39 <option value="False" selected="true">Wilcoxon test (nonparametric)</option> 43 <option value="False" selected="true">Wilcoxon test (nonparametric)</option>
40 <option value="True">standard t-test (parametric)</option> 44 <option value="True">standard t-test (parametric)</option>
41 </param> 45 </param>
42 <param argument="--paired" type="boolean" truevalue="--paired" falsevalue="" checked="false" label="Perform paired tests"/> 46 <param argument="--paired" type="boolean" truevalue="--paired" falsevalue="" checked="false" label="Perform paired tests"/>
49 <param name="file" value="ec_ttest.tab" ftype="tabular" /> 53 <param name="file" value="ec_ttest.tab" ftype="tabular" />
50 <param name="parametric" value="True" /> 54 <param name="parametric" value="True" />
51 <param name="ontology" value="ec" /> 55 <param name="ontology" value="ec" />
52 <param name="mode" value="f" /> 56 <param name="mode" value="f" />
53 <param name="samps" value="samples_basic.tab" ftype="tabular" /> 57 <param name="samps" value="samples_basic.tab" ftype="tabular" />
58 <param name="control_group" value="s2"/>
54 <output name="outfile" value="ec_ttest_tested.tab" ftype="tabular"/> 59 <output name="outfile" value="ec_ttest_tested.tab" ftype="tabular"/>
55 </test> 60 </test>
56 </tests> 61 </tests>
57 <help><![CDATA[ 62 <help><![CDATA[
58 metaQuantome stat 63 metaQuantome stat