Mercurial > repos > galaxyp > mqppep_preproc

comparison macros.xml @ 1:b76c75521d91 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 43e7a43b545c24b2dc33d039198551c032aa79be
author galaxyp
date Fri, 28 Oct 2022 18:26:42 +0000
parents 8dfd5d2b5903
children a5e7469dfdfa
comparison
equal deleted inserted replaced
0:8dfd5d2b5903 1:b76c75521d91
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.1.13</token> 2 <token name="@TOOL_VERSION@">0.1.15</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="1.56.0" >bioconductor-preprocesscore</requirement> 6 <requirement type="package" version="1.56.0" >bioconductor-preprocesscore</requirement>
7 <requirement type="package" version="1.22.2" >numpy</requirement> 7 <requirement type="package" version="6.2.1" >gmp</requirement>
8 <requirement type="package" version="1.23.4" >numpy</requirement>
8 <requirement type="package" version="0.3.3" >openblas</requirement> 9 <requirement type="package" version="0.3.3" >openblas</requirement>
9 <requirement type="package" version="1.4.1" >pandas</requirement> 10 <requirement type="package" version="1.5.1" >pandas</requirement>
10 <requirement type="package" version="1.64" >perl-dbd-sqlite</requirement> 11 <requirement type="package" version="1.70" >perl-dbd-sqlite</requirement>
11 <requirement type="package" version="5.26.2" >perl</requirement> 12 <requirement type="package" version="5.32.1" >perl</requirement>
12 <requirement type="package" version="1.4.0" >pyahocorasick</requirement> 13 <requirement type="package" version="1.4.4" >pyahocorasick</requirement>
13 <requirement type="package" version="3.9.10" >python</requirement> 14 <requirement type="package" version="3.10.6" >python</requirement>
14 <requirement type="package" version="1.14.2" >r-data.table</requirement> 15 <requirement type="package" version="4.1.3" >r-base</requirement>
15 <requirement type="package" version="1.1.2" >r-dbi</requirement> 16 <requirement type="package" version="6.0_93" >r-caret</requirement>
16 <requirement type="package" version="3.3.5" >r-ggplot2</requirement> 17 <requirement type="package" version="1.14.4" >r-data.table</requirement>
18 <requirement type="package" version="1.1.3" >r-dbi</requirement>
19 <requirement type="package" version="3.3.6" >r-ggplot2</requirement>
17 <requirement type="package" version="3.1.3" >r-gplots</requirement> 20 <requirement type="package" version="3.1.3" >r-gplots</requirement>
18 <requirement type="package" version="0.9.4" >r-latex2exp</requirement> 21 <requirement type="package" version="0.9.5" >r-latex2exp</requirement>
19 <requirement type="package" version="1.7.1" >r-optparse</requirement> 22 <requirement type="package" version="1.7.3" >r-optparse</requirement>
20 <requirement type="package" version="1.4.4" >r-reshape2</requirement> 23 <requirement type="package" version="1.4.4" >r-reshape2</requirement>
21 <requirement type="package" version="2.11" >r-rmarkdown</requirement> 24 <requirement type="package" version="2.17" >r-rmarkdown</requirement>
22 <requirement type="package" version="2.2.8" >r-rsqlite</requirement> 25 <!--
23 <requirement type="package" version="0.4.0" >r-sass</requirement> 26 <requirement type="package" version="2.2.18" >r-rsqlite</requirement>
27 <requirement type="package" version="0.4.2" >r-sass</requirement>
28 -->
29 <requirement type="package" version="1.2.2" >r-sessioninfo</requirement>
24 <requirement type="package" version="0.4_11" >r-sqldf</requirement> 30 <requirement type="package" version="0.4_11" >r-sqldf</requirement>
25 <requirement type="package" version="1.4.0" >r-stringr</requirement> 31 <requirement type="package" version="1.4.1" >r-stringr</requirement>
26 <requirement type="package" version="0.37" >r-tinytex</requirement> 32 <requirement type="package" version="0.42" >r-tinytex</requirement>
27 <requirement type="package" version="0.3.7" >r-vioplot</requirement> 33 <requirement type="package" version="0.3.7" >r-vioplot</requirement>
28 <!-- 34 <!--
29 It would be nice to use conda-forge/texlive-core rather than r-tinytex because the 35 It would be nice to use conda-forge/texlive-core rather than r-tinytex because the
30 former installs texlive when the package is built, but issue 23 blocked PDF-creation. 36 former installs texlive when the package is built, but issue 19/61 blocked PDF-creation.
31 Also, texlive-core also gave pango font errors (output had missing symbols replaced 37 Also, texlive-core also gave pango font errors (output had missing symbols replaced
32 with boxes) unless I specified the build as well as the version when building a 38 with boxes) unless I specified the build as well as the version when building a
33 conda environment, e.g.: texlive-core=20210325=h97429d4_0 39 conda environment, e.g.: texlive-core=20210325=h97429d4_0
34 --> 40 -->
35 </requirements> 41 </requirements>
36 <!-- I specified the versions above because it takes a VERY long time to search for package versions when they are not omitted; also, version numbers should lead to reproducible behavior. Contrast execution times of this (about 18 seconds): 42 <!-- I specified the versions above because it takes a VERY long time
37 echo n | time conda create -n mqppep_ver -c conda-forge -c bioconda \ 43 to search for package versions when they are not omitted; also,
38 bioconductor-preprocesscore=1.56.0 \ 44 locking version numbers might lead to more-reproducible behavior.
39 numpy=1.22.2 \
40 openblas=0.3.3 \
41 pandas=1.4.1 \
42 perl-dbd-sqlite=1.64 \
43 perl-dbd-sqlite=1.64 \
44 perl=5.26.2 \
45 pyahocorasick=1.4.0 \
46 python=3.9.10 \
47 r-data.table=1.14.2 \
48 r-dbi=1.1.2 \
49 r-ggplot2=3.3.5 \
50 r-gplots=3.1.3 \
51 r-latex2exp=0.9.4 \
52 r-optparse=1.7.1 \
53 r-reshape2=1.4.4 \
54 r-rmarkdown=2.11 \
55 r-rsqlite=2.2.8 \
56 r-sass=0.4.0 \
57 r-sqldf=0.4_11 \
58 r-stringr=1.4.0 \
59 r-tinytex=0.37 \
60 r-vioplot=0.3.7
61 with this (42 or more seconds):
62 echo n | time conda create -n mqppep_nover -c conda-forge -c bioconda \
63 bioconductor-preprocesscore= \
64 numpy \
65 openblas=0.3.3 \
66 pandas \
67 perl \
68 perl-dbd-sqlite \
69 perl-dbd-sqlite \
70 pyahocorasick \
71 python \
72 r-data.table \
73 r-dbi \
74 r-ggplot2 \
75 r-gplots \
76 r-latex2exp \
77 r-optparse \
78 r-reshape2 \
79 r-rmarkdown \
80 r-rsqlite \
81 r-sass \
82 r-sqldf \
83 r-stringr \
84 r-tinytex \
85 r-vioplot
86
87 --> 45 -->
88 </xml> 46 </xml>
89 </macros> 47 </macros>