Mercurial > repos > galaxyp > mqppep_preproc
diff macros.xml @ 0:8dfd5d2b5903 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mqppep commit 3a7b3609d6e514c9e8f980ecb684960c6b2252fe
| author | galaxyp |
|---|---|
| date | Mon, 11 Jul 2022 19:22:54 +0000 |
| parents | |
| children | b76c75521d91 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Jul 11 19:22:54 2022 +0000 @@ -0,0 +1,89 @@ +<macros> + <token name="@TOOL_VERSION@">0.1.13</token> + <token name="@VERSION_SUFFIX@">0</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="1.56.0" >bioconductor-preprocesscore</requirement> + <requirement type="package" version="1.22.2" >numpy</requirement> + <requirement type="package" version="0.3.3" >openblas</requirement> + <requirement type="package" version="1.4.1" >pandas</requirement> + <requirement type="package" version="1.64" >perl-dbd-sqlite</requirement> + <requirement type="package" version="5.26.2" >perl</requirement> + <requirement type="package" version="1.4.0" >pyahocorasick</requirement> + <requirement type="package" version="3.9.10" >python</requirement> + <requirement type="package" version="1.14.2" >r-data.table</requirement> + <requirement type="package" version="1.1.2" >r-dbi</requirement> + <requirement type="package" version="3.3.5" >r-ggplot2</requirement> + <requirement type="package" version="3.1.3" >r-gplots</requirement> + <requirement type="package" version="0.9.4" >r-latex2exp</requirement> + <requirement type="package" version="1.7.1" >r-optparse</requirement> + <requirement type="package" version="1.4.4" >r-reshape2</requirement> + <requirement type="package" version="2.11" >r-rmarkdown</requirement> + <requirement type="package" version="2.2.8" >r-rsqlite</requirement> + <requirement type="package" version="0.4.0" >r-sass</requirement> + <requirement type="package" version="0.4_11" >r-sqldf</requirement> + <requirement type="package" version="1.4.0" >r-stringr</requirement> + <requirement type="package" version="0.37" >r-tinytex</requirement> + <requirement type="package" version="0.3.7" >r-vioplot</requirement> + <!-- + It would be nice to use conda-forge/texlive-core rather than r-tinytex because the + former installs texlive when the package is built, but issue 23 blocked PDF-creation. + Also, texlive-core also gave pango font errors (output had missing symbols replaced + with boxes) unless I specified the build as well as the version when building a + conda environment, e.g.: texlive-core=20210325=h97429d4_0 + --> + </requirements> + <!-- I specified the versions above because it takes a VERY long time to search for package versions when they are not omitted; also, version numbers should lead to reproducible behavior. Contrast execution times of this (about 18 seconds): + echo n | time conda create -n mqppep_ver -c conda-forge -c bioconda \ + bioconductor-preprocesscore=1.56.0 \ + numpy=1.22.2 \ + openblas=0.3.3 \ + pandas=1.4.1 \ + perl-dbd-sqlite=1.64 \ + perl-dbd-sqlite=1.64 \ + perl=5.26.2 \ + pyahocorasick=1.4.0 \ + python=3.9.10 \ + r-data.table=1.14.2 \ + r-dbi=1.1.2 \ + r-ggplot2=3.3.5 \ + r-gplots=3.1.3 \ + r-latex2exp=0.9.4 \ + r-optparse=1.7.1 \ + r-reshape2=1.4.4 \ + r-rmarkdown=2.11 \ + r-rsqlite=2.2.8 \ + r-sass=0.4.0 \ + r-sqldf=0.4_11 \ + r-stringr=1.4.0 \ + r-tinytex=0.37 \ + r-vioplot=0.3.7 + with this (42 or more seconds): + echo n | time conda create -n mqppep_nover -c conda-forge -c bioconda \ + bioconductor-preprocesscore= \ + numpy \ + openblas=0.3.3 \ + pandas \ + perl \ + perl-dbd-sqlite \ + perl-dbd-sqlite \ + pyahocorasick \ + python \ + r-data.table \ + r-dbi \ + r-ggplot2 \ + r-gplots \ + r-latex2exp \ + r-optparse \ + r-reshape2 \ + r-rmarkdown \ + r-rsqlite \ + r-sass \ + r-sqldf \ + r-stringr \ + r-tinytex \ + r-vioplot + + --> + </xml> +</macros>