# ms2preproc

This repository contains a tool wrapper for ms2preproc.

http://hci.iwr.uni-heidelberg.de/MIP/Software/ms2preproc.php

This tool requires Galaxy to be equipped with common proteomic
datatypes. These can be obtained by installing Ira Cooke's ProtK via
the tool shed or merging the changesets from the following repository
into your Galaxy instance:

     https://bitbucket.org/galaxyp/galaxy-dist-proteomics

# Installing

This tool wrapper requires ms2preproc to be installed. 

For Galaxy-P we are installing this tool via CloudBioLinux
(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
this fabric script may not be exactly appropriate for your environment
it may serve as a template for how to install this software.