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comparison msconvert_subset.xml @ 5:08bb52273ae1

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Bjoern: remove unused repository dependency, cleanups
author Jim Johnson <jj@umn.edu>
date Mon, 17 Feb 2014 08:13:33 -0600
parents 861e3f0c2bb6
children
comparison
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4:001e77708ec9 5:08bb52273ae1
1 <tool id="msconvert_subset" name="Subset Peak List" version="0.2.0"> 1 <tool id="msconvert_subset" name="Subset Peak List" version="0.2.1">
2 <description>against list of scan numbers or indices.</description> 2 <description>against list of scan numbers or indices.</description>
3 <requirements>
4 <requirement type="package">proteowizard</requirement>
5 </requirements>
3 <command interpreter="python"> 6 <command interpreter="python">
4 msconvert_wrapper.py 7 msconvert_wrapper.py
5 --input=${input} 8 --input=${input}
6 --output=${output} 9 --output=${output}
7 --fromextension=${input.ext} 10 --fromextension=${input.ext}
93 <when input="output_type" value="ms2" format="ms2" /> 96 <when input="output_type" value="ms2" format="ms2" />
94 <when input="output_type" value="mgf" format="mgf" /> 97 <when input="output_type" value="mgf" format="mgf" />
95 </change_format> 98 </change_format>
96 </data> 99 </data>
97 </outputs> 100 </outputs>
98
99 <requirements>
100 <requirement type="package">proteowizard</requirement>
101 </requirements>
102
103 <help> 101 <help>
104 </help> 102 </help>
105 </tool> 103 </tool>