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comparison msconvert.xml @ 18:331a50e8fd2f draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit dade2a055b8b1bd4b3c177638e833eb2a6c65196
author galaxyp
date Mon, 10 Mar 2025 07:48:32 +0000
parents ab6c14374bc0
children
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17:ab6c14374bc0 18:331a50e8fd2f
1 <tool id="msconvert" name="msconvert" version="@VERSION@.4"> 1 <tool id="msconvert" name="msconvert" version="@VERSION@.5" profile="@PROFILE_VERSION@">
2 <description>Convert and/or filter mass spectrometry files</description> 2 <description>Convert and/or filter mass spectrometry files</description>
3 <macros> 3 <macros>
4 <import>msconvert_macros.xml</import> 4 <import>msconvert_macros.xml</import>
5 </macros> 5 </macros>
6 <xrefs> 6 <xrefs>
12 <stdio> 12 <stdio>
13 <regex match="Error writing run" source="stderr" level="fatal" description="Could not convert. Check stderr." /> 13 <regex match="Error writing run" source="stderr" level="fatal" description="Could not convert. Check stderr." />
14 </stdio> 14 </stdio>
15 <expand macro="msconvertCommand" /> 15 <expand macro="msconvertCommand" />
16 <inputs> 16 <inputs>
17 <param format="mzml,mzxml,mz5,mgf,ms2,thermo.raw,raw,wiff,wiff.tar,agilentbrukeryep.d.tar,agilentmasshunter.d.tar,brukerbaf.d.tar,brukertdf.d.tar,watersmasslynx.raw.tar" name="input" type="data" label="Input unrefined MS data" /> 17 <param format="mzml,mzxml,mz5,mgf,ms2,thermo.raw,wiff,wiff.tar,agilentbrukeryep.d.tar,agilentmasshunter.d.tar,brukerbaf.d.tar,brukertdf.d.tar,watersmasslynx.raw.tar" name="input" type="data" label="Input unrefined MS data" />
18 <expand macro="msconvertInputParameters" /> 18 <expand macro="msconvertInputParameters" />
19 </inputs> 19 </inputs>
20 <expand macro="msconvertOutput" /> 20 <expand macro="msconvertOutput" />
21 <tests> 21 <tests>
22 <expand macro="msconvert_tests" /> 22 <expand macro="msconvert_tests" />