Mercurial > repos > galaxyp > msconvert
diff README.md @ 0:10f4a0356342
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author | galaxyp |
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date | Wed, 19 Dec 2012 00:10:08 -0500 |
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children | d2c61663e33c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Wed Dec 19 00:10:08 2012 -0500 @@ -0,0 +1,47 @@ +# msconvert + +This repository contains Galaxy tool wrappers for msconvert, part of +the ProteoWizard (http://proteowizard.sourceforge.net/) package. + +# Installing + +Due to potential difficulties installing ProteoWizard with vendor +library support, tools for interacting with vendor types are seperated +out into their own wrappers. Galaxy is generally deployed under Linux, +but vendor support in ProteoWizard requires .NET 4.0. There are at +least two ways to get this to work: + + * Galaxy jobs may be configured to submit to a Windows host with + ProteoWizard installed using the + LWR. http://wiki.g2.bx.psu.edu/Admin/Config/LWR + + * ProteoWizard can be installed under Wine. Guidance on how to set + this up and package such environments for cloud deployments can be + found here: https://github.com/jmchilton/proteomics-wine-env + +Wrappers for both msconvert version 2 and version 3+ are provided +because version 3+ of msconvert with vendor library support requires +.NET 4.0 and this may difficult or impossible under Wine in Linux with +all but the most recent versions of Wine (1.4+). +# Obtaining Tools + +Repositories for all Galaxy-P tools can be found at +https:/bitbucket.org/galaxyp/. + +# Contact + +Please send suggestions for improvements and bug reports to +jmchilton@gmail.com. + +# License + +All Galaxy-P tools are licensed under the Apache License Version 2.0 +unless otherwise documented. + +# Tool Versioning + +Galaxy-P tools will have versions of the form X.Y.Z. Versions +differing only after the second decimal should be completely +compatible with each other. Breaking changes should result in an +increment of the number before and/or after the first decimal. All +tools of version less than 1.0.0 should be considered beta.