Mercurial > repos > galaxyp > msconvert
diff test-data/BrukerBafTest.mzML @ 15:6153e8ada1ee draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 7aa618964e95528ed59eea299701e65ccacae877"
| author | galaxyp |
|---|---|
| date | Mon, 30 Nov 2020 16:01:10 +0000 |
| parents | 9d5de24e6ef7 |
| children |
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--- a/test-data/BrukerBafTest.mzML Mon Nov 16 17:25:12 2020 +0000 +++ b/test-data/BrukerBafTest.mzML Mon Nov 30 16:01:10 2020 +0000 @@ -2,7 +2,7 @@ <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="BrukerBafTest" version="1.1.0"> <cvList count="2"> - <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.1.12" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"/> + <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.1.41" URI="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"/> <cv id="UO" fullName="Unit Ontology" version="09:04:2014" URI="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo"/> </cvList> <fileDescription> @@ -30,13 +30,14 @@ <software id="apexControl" version="ApexControl 3.0.0.alpha.35 (development version, April 18, 2008)"> <cvParam cvRef="MS" accession="MS:1000706" name="apexControl" value=""/> </software> - <software id="pwiz_Reader_Bruker" version="3.0.19044"> + <software id="pwiz_Reader_Bruker" version="3.0.20287"> <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> </software> </softwareList> <instrumentConfigurationList count="1"> <instrumentConfiguration id="IC1"> <referenceableParamGroupRef ref="CommonInstrumentParams"/> + <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="-1.3"/> <componentList count="3"> <source order="1"> <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/> @@ -99,15 +100,65 @@ </binaryDataArrayList> </spectrum> </spectrumList> + <chromatogramList count="2" defaultDataProcessingRef="pwiz_Reader_Bruker_conversion"> + <chromatogram index="0" id="TIC" defaultArrayLength="1"> + <cvParam cvRef="MS" accession="MS:1000235" name="total ion current chromatogram" value=""/> + <binaryDataArrayList count="3"> + <binaryDataArray encodedLength="16"> + <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/> + <cvParam cvRef="MS" accession="MS:1000574" name="zlib compression" value=""/> + <cvParam cvRef="MS" accession="MS:1000595" name="time array" value="" unitCvRef="UO" unitAccession="UO:0000010" unitName="second"/> + <binary>eJxjYIAAAAAIAAE=</binary> + </binaryDataArray> + <binaryDataArray encodedLength="16"> + <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/> + <cvParam cvRef="MS" accession="MS:1000574" name="zlib compression" value=""/> + <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/> + <binary>eJzT/rfSHwAFSwIi</binary> + </binaryDataArray> + <binaryDataArray arrayLength="1" encodedLength="16"> + <cvParam cvRef="MS" accession="MS:1000522" name="64-bit integer" value=""/> + <cvParam cvRef="MS" accession="MS:1000574" name="zlib compression" value=""/> + <cvParam cvRef="MS" accession="MS:1000786" name="non-standard data array" value="ms level" unitCvRef="UO" unitAccession="UO:0000186" unitName="dimensionless unit"/> + <binary>eJxjZIAAAAAQAAI=</binary> + </binaryDataArray> + </binaryDataArrayList> + </chromatogram> + <chromatogram index="1" id="BPC" defaultArrayLength="1"> + <cvParam cvRef="MS" accession="MS:1000628" name="basepeak chromatogram" value=""/> + <binaryDataArrayList count="3"> + <binaryDataArray encodedLength="16"> + <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" value=""/> + <cvParam cvRef="MS" accession="MS:1000574" name="zlib compression" value=""/> + <cvParam cvRef="MS" accession="MS:1000595" name="time array" value="" unitCvRef="UO" unitAccession="UO:0000010" unitName="second"/> + <binary>eJxjYIAAAAAIAAE=</binary> + </binaryDataArray> + <binaryDataArray encodedLength="16"> + <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/> + <cvParam cvRef="MS" accession="MS:1000574" name="zlib compression" value=""/> + <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/> + <binary>eJwTCLLyAwAB/ADr</binary> + </binaryDataArray> + <binaryDataArray arrayLength="1" encodedLength="16"> + <cvParam cvRef="MS" accession="MS:1000522" name="64-bit integer" value=""/> + <cvParam cvRef="MS" accession="MS:1000574" name="zlib compression" value=""/> + <cvParam cvRef="MS" accession="MS:1000786" name="non-standard data array" value="ms level" unitCvRef="UO" unitAccession="UO:0000186" unitName="dimensionless unit"/> + <binary>eJxjZIAAAAAQAAI=</binary> + </binaryDataArray> + </binaryDataArrayList> + </chromatogram> + </chromatogramList> </run> </mzML> <indexList count="2"> <index name="spectrum"> - 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