# HG changeset patch
# User galaxyp
# Date 1373647551 14400
# Node ID 001e77708ec982dfda1f41ead909f09ef97df2d8
# Parent 7e41529ee90cc193fe276152964c127f8b6f121c
Uploaded
diff -r 7e41529ee90c -r 001e77708ec9 msconvert3.xml
--- a/msconvert3.xml Thu Jun 20 16:08:23 2013 -0400
+++ b/msconvert3.xml Fri Jul 12 12:45:51 2013 -0400
@@ -116,7 +116,7 @@
-
+
@@ -136,7 +136,7 @@
-
+
@@ -145,7 +145,7 @@
-
+
@@ -363,7 +363,7 @@
**What it does**
-Converts between various mass spectrometry peak list representations. Additional options such as filtering and/or precursor recalculation are available.
+Allows interconversion within various mass spectrometry peak list formats. Additional options such as filtering and/or precursor recalculation are available.
You can view the original documentation here_.
diff -r 7e41529ee90c -r 001e77708ec9 msconvert3_raw.xml
--- a/msconvert3_raw.xml Thu Jun 20 16:08:23 2013 -0400
+++ b/msconvert3_raw.xml Fri Jul 12 12:45:51 2013 -0400
@@ -114,10 +114,10 @@
-
+
-
+
@@ -126,7 +126,7 @@
-
+
@@ -353,6 +353,21 @@
.. _here: http://proteowizard.sourceforge.net/tools/msconvert.html
+**Recommended**
+
+For X!tandem searches: Use mzml format generated from RAW file.
+
+ RAW → mzml
+
+For ProteinPilot searches: Use MGF format generated from mzml file using MGF formatter.
+
+ RAW → mzml → MGF (ProteinPilot)
+
+For MaxQuant searches: Use RAW file as an input.
+
+For OMSSA : Use MGF format generated from mzml file using MGF formatter.
+
+ RAW → mzml → MGF (Mascot)
------
**Citation**