Mercurial > repos > galaxyp > msconvert_nix

annotate test-data/small-denoise.mzML @ 0:baa6c072fccc draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
author galaxyp
date Fri, 08 Apr 2016 16:08:09 -0400
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children 7016f1f10f42
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1 <?xml version="1.0" encoding="utf-8"?>
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2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
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3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
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4 <cvList count="2">
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5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
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6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
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7 </cvList>
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8 <fileDescription>
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9 <fileContent>
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
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11 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
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12 </fileContent>
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13 <sourceFileList count="3">
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14 <sourceFile id="RAW1" name="small.RAW" location="file:///C:\pwiz-src\trunk\pwiz\example_data">
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15 <cvParam cvRef="MS" accession="MS:1000768" name="Thermo nativeID format" value=""/>
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16 <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW format" value=""/>
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17 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="b43e9286b40e8b5dbc0dfa2e428495769ca96a96"/>
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18 </sourceFile>
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19 <sourceFile id="small.mzML" name="small.mzML" location="file:///">
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20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/>
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21 </sourceFile>
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22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
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23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8af1e376b6ed33679f7fcf965a5e7fd6b1bf77b7"/>
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24 </sourceFile>
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25 </sourceFileList>
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26 </fileDescription>
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27 <referenceableParamGroupList count="1">
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28 <referenceableParamGroup id="CommonInstrumentParams">
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29 <cvParam cvRef="MS" accession="MS:1000448" name="LTQ FT" value=""/>
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30 <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="SN06061F"/>
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31 </referenceableParamGroup>
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32 </referenceableParamGroupList>
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33 <softwareList count="3">
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34 <software id="Xcalibur" version="1.1 Beta 7">
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35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
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36 </software>
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37 <software id="pwiz" version="3.0.8981">
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38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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39 </software>
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40 <software id="pwiz_3.0.8990" version="3.0.8990">
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41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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42 </software>
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43 </softwareList>
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44 <instrumentConfigurationList count="2">
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45 <instrumentConfiguration id="IC1">
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46 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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47 <componentList count="3">
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48 <source order="1">
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49 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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50 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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51 </source>
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52 <analyzer order="2">
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53 <cvParam cvRef="MS" accession="MS:1000079" name="fourier transform ion cyclotron resonance mass spectrometer" value=""/>
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54 </analyzer>
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55 <detector order="3">
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56 <cvParam cvRef="MS" accession="MS:1000624" name="inductive detector" value=""/>
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57 </detector>
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58 </componentList>
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59 <softwareRef ref="Xcalibur"/>
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60 </instrumentConfiguration>
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61 <instrumentConfiguration id="IC2">
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62 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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63 <componentList count="3">
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64 <source order="1">
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65 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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66 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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67 </source>
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68 <analyzer order="2">
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69 <cvParam cvRef="MS" accession="MS:1000083" name="radial ejection linear ion trap" value=""/>
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70 </analyzer>
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71 <detector order="3">
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72 <cvParam cvRef="MS" accession="MS:1000253" name="electron multiplier" value=""/>
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73 </detector>
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74 </componentList>
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75 <softwareRef ref="Xcalibur"/>
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76 </instrumentConfiguration>
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77 </instrumentConfigurationList>
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galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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galaxyp
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diff changeset
552 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
553 </binaryDataArrayList>
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galaxyp
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554 </spectrum>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1965 <binary>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</binary>
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1966 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1967 <binaryDataArray encodedLength="1612">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1968 <cvParam cvRef="MS" accession="MS:1000519" name="32-bit integer" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1969 <cvParam cvRef="MS" accession="MS:1002313" name="MS-Numpress positive integer compression" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1970 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1971 <binary>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</binary>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1972 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1973 </binaryDataArrayList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1974 </spectrum>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1975 <spectrum index="35" id="controllerType=0 controllerNumber=1 scan=36" defaultArrayLength="732" dataProcessingRef="pwiz_Reader_conversion">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1976 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1977 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1978 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1979 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1980 <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="810.545532226563" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1981 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="1.057720703125e05" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1982 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="6.5487065e06"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1983 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="200.090909093618" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1984 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="2000.00005364418" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1985 <scanList count="1">
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1986 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1987 <scan instrumentConfigurationRef="IC2">
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1988 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="0.361428333333" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1989 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="ITMS + p ESI Full ms [200.00-2000.00]"/>
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parents:
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1990 <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="2"/>
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1991 <cvParam cvRef="MS" accession="MS:1000927" name="ion injection time" value="1.416100502014" unitCvRef="UO" unitAccession="UO:0000028" unitName="millisecond"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1992 <scanWindowList count="1">
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1993 <scanWindow>
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1994 <cvParam cvRef="MS" accession="MS:1000501" name="scan window lower limit" value="200.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1995 <cvParam cvRef="MS" accession="MS:1000500" name="scan window upper limit" value="2000.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1996 </scanWindow>
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1997 </scanWindowList>
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1998 </scan>
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1999 </scanList>
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2000 <binaryDataArrayList count="2">
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2001 <binaryDataArray encodedLength="3496">
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2002 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
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2003 <cvParam cvRef="MS" accession="MS:1002312" name="MS-Numpress linear prediction compression" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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2004 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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diff changeset
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diff changeset
2006 </binaryDataArray>
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2007 <binaryDataArray encodedLength="1980">
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2008 <cvParam cvRef="MS" accession="MS:1000519" name="32-bit integer" value=""/>
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diff changeset
2009 <cvParam cvRef="MS" accession="MS:1002313" name="MS-Numpress positive integer compression" value=""/>
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diff changeset
2010 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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diff changeset
2011 <binary>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</binary>
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galaxyp
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diff changeset
2012 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
2013 </binaryDataArrayList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
2014 </spectrum>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
2015 <spectrum index="36" id="controllerType=0 controllerNumber=1 scan=37" defaultArrayLength="230" dataProcessingRef="pwiz_Reader_conversion">
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diff changeset
2016 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
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diff changeset
2017 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="2"/>
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diff changeset
2018 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
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diff changeset
2019 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
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diff changeset
2020 <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="736.633056640625" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
2021 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="2.982659375e05" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
2022 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="1.04157375e06"/>
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2023 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="228.148010253906" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
2024 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1503.574340820313" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
2025 <scanList count="1">
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diff changeset
2026 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
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2027 <scan instrumentConfigurationRef="IC2">
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2028 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="0.364755" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
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2029 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="ITMS + c ESI d Full ms2 810.73@cid35.00 [210.00-1635.00]"/>
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diff changeset
2030 <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="3"/>
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2031 <cvParam cvRef="MS" accession="MS:1000927" name="ion injection time" value="11.512071609497" unitCvRef="UO" unitAccession="UO:0000028" unitName="millisecond"/>
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2032 <userParam name="[Thermo Trailer Extra]Monoisotopic M/Z:" value="0" type="xsd:float"/>
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2033 <scanWindowList count="1">
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2034 <scanWindow>
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2035 <cvParam cvRef="MS" accession="MS:1000501" name="scan window lower limit" value="210.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2036 <cvParam cvRef="MS" accession="MS:1000500" name="scan window upper limit" value="1635.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2037 </scanWindow>
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diff changeset
2038 </scanWindowList>
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2039 </scan>
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diff changeset
2040 </scanList>
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2346 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2347 <binaryDataArray encodedLength="3732">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2348 <cvParam cvRef="MS" accession="MS:1000519" name="32-bit integer" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2349 <cvParam cvRef="MS" accession="MS:1002313" name="MS-Numpress positive integer compression" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2350 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
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galaxyp
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galaxyp
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galaxyp
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2767 </index>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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galaxyp
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galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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galaxyp
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diff changeset
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galaxyp
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2774 </indexedmzML>