annotate test-data/small-numpressLS.mzML @ 2:c9b96a178758 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 532424dd138aa77ec59704fb5680f5ed0e2195f3
author galaxyp
date Tue, 14 Mar 2017 17:48:15 -0400
parents 7016f1f10f42
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1 <?xml version="1.0" encoding="utf-8"?>
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2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
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3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
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4 <cvList count="2">
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5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
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6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
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7 </cvList>
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8 <fileDescription>
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9 <fileContent>
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12 </fileContent>
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14 <sourceFile id="RAW1" name="small.RAW" location="file:///C:\pwiz-src\trunk\pwiz\example_data">
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16 <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW format" value=""/>
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17 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="b43e9286b40e8b5dbc0dfa2e428495769ca96a96"/>
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18 </sourceFile>
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19 <sourceFile id="small.mzML" name="small.mzML" location="file:///">
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21 </sourceFile>
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22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
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24 </sourceFile>
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25 </sourceFileList>
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26 </fileDescription>
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27 <referenceableParamGroupList count="1">
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28 <referenceableParamGroup id="CommonInstrumentParams">
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31 </referenceableParamGroup>
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32 </referenceableParamGroupList>
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33 <softwareList count="3">
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34 <software id="Xcalibur" version="1.1 Beta 7">
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35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
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36 </software>
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37 <software id="pwiz" version="3.0.8981">
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38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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39 </software>
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40 <software id="pwiz_3.0.9987" version="3.0.9987">
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41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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42 </software>
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43 </softwareList>
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44 <instrumentConfigurationList count="2">
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45 <instrumentConfiguration id="IC1">
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46 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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47 <componentList count="3">
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48 <source order="1">
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49 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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50 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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51 </source>
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52 <analyzer order="2">
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53 <cvParam cvRef="MS" accession="MS:1000079" name="fourier transform ion cyclotron resonance mass spectrometer" value=""/>
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54 </analyzer>
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55 <detector order="3">
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56 <cvParam cvRef="MS" accession="MS:1000624" name="inductive detector" value=""/>
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57 </detector>
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58 </componentList>
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59 <softwareRef ref="Xcalibur"/>
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60 </instrumentConfiguration>
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61 <instrumentConfiguration id="IC2">
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62 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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63 <componentList count="3">
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64 <source order="1">
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65 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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66 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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67 </source>
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68 <analyzer order="2">
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69 <cvParam cvRef="MS" accession="MS:1000083" name="radial ejection linear ion trap" value=""/>
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70 </analyzer>
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71 <detector order="3">
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72 <cvParam cvRef="MS" accession="MS:1000253" name="electron multiplier" value=""/>
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73 </detector>
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74 </componentList>
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75 <softwareRef ref="Xcalibur"/>
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76 </instrumentConfiguration>
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
537 </scanWindowList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
539 </scanList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
540 <binaryDataArrayList count="2">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
542 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
546 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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547 <binaryDataArray encodedLength="3136">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
548 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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550 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
552 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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1965 <binary>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</binary>
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1966 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1967 <binaryDataArray encodedLength="1380">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1968 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
diff changeset
1969 <cvParam cvRef="MS" accession="MS:1002314" name="MS-Numpress short logged float compression" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1970 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1971 <binary>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</binary>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1972 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1973 </binaryDataArrayList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1974 </spectrum>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1975 <spectrum index="35" id="controllerType=0 controllerNumber=1 scan=36" defaultArrayLength="732" dataProcessingRef="pwiz_Reader_conversion">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
diff changeset
1976 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1977 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1978 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1979 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1980 <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="810.545532226563" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1981 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="1.057720703125e05" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
diff changeset
1982 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="6.5487065e06"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1983 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="200.090909093618" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1984 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="2000.00005364418" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
diff changeset
1985 <scanList count="1">
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1986 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1987 <scan instrumentConfigurationRef="IC2">
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parents:
diff changeset
1988 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="0.361428333333" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1989 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="ITMS + p ESI Full ms [200.00-2000.00]"/>
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1990 <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="2"/>
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1991 <cvParam cvRef="MS" accession="MS:1000927" name="ion injection time" value="1.416100502014" unitCvRef="UO" unitAccession="UO:0000028" unitName="millisecond"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1992 <scanWindowList count="1">
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1993 <scanWindow>
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1994 <cvParam cvRef="MS" accession="MS:1000501" name="scan window lower limit" value="200.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1995 <cvParam cvRef="MS" accession="MS:1000500" name="scan window upper limit" value="2000.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1996 </scanWindow>
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1997 </scanWindowList>
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1998 </scan>
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1999 </scanList>
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2000 <binaryDataArrayList count="2">
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2001 <binaryDataArray encodedLength="3496">
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2002 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
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2003 <cvParam cvRef="MS" accession="MS:1002312" name="MS-Numpress linear prediction compression" value=""/>
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parents:
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2004 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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diff changeset
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diff changeset
2006 </binaryDataArray>
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2007 <binaryDataArray encodedLength="1964">
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2008 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
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2009 <cvParam cvRef="MS" accession="MS:1002314" name="MS-Numpress short logged float compression" value=""/>
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diff changeset
2010 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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diff changeset
2011 <binary>QLYgAAAAAAAAAG6EM4tokMONbo+EhqKbMIfZmZWY2acCtSWo4qrnp3CMeIwooVufkqGIllGRyqs/l9WQYo8YntKq+JcprWW+b5VvnBScmL8TlqeSZo6Gkv6hdLOUiieTHpd9jUGPSpJrkX+gWZzMkL+WoqWxvBOhOZqJsYCq/IZpmbqZwomGkmediszUrn6UoI/tlk+k0pQrjmmVbpm7klus8ZnKlOecuJxrsV2UxJ7/lCOf0ZLkqlWdGaONnF6fwY99lP+W1JRrl+GVnLS/oISS5Zgolw6bdZ6nkhuS5Z7rmiOVJKQmoeKTb4vrpFuhnJUskteahJQIjuiWJZGlo2WX1JvUnSiwEpfCk+2PNJz4mKmXTJ6TkbGZX7PYlUWliJebkSGi35rcpTurIKpLm9Cr8ZvbphmaPZJ9kI6VSJ1tmMibOY/Cpcynp5FXqFCR4KTLlo+iUJa2o8KXuZypncqkU5uKk5ihAplKkd+ecqkUk7We2JkLk/mycKFno0iyvrHxz6unbJxfmNWZ9pwooC6ZVbCzrRWnTKYUpO2UxbkGtDeeyZ7BrEyq+ZgeyGbHfKWzolC3NJtnqlmgQsatxGuqXKaTqeqaOLrQrcWgOp2kpsic8aKSuRmTkqL5nM+Zm6YqnLKY15u9km2XHptXstavc5+JoL2g7KiQo5SoGp0VmF63mLaZu4yyFNYJz4K5bbiapj2Wl5YEqkOfbqXwl7aZC58zmKeUfJZnuSWn+KELze7JhZ7xumCnoLgooBSkIJeVkyaeNp2lmumqdY2erW6fS6IyrFOktqJzqSSnedphqUmUQ5jmnwTCX8HGsLKc/5XImRGV6JWSm72bw5rLlZq0mKQxniWXKpRTi8mUDKh2mpyak6Pos3atW6eEsG2v8qZEmR6Tq5gWjBqP2Y6HjaKPypE7vff/GPo3uumojaQsx1qhfby/7JrsAMrVoVKaxpPHn5CcWKAHt22x3aYml06ZQ6avujGrEKLLtOSgD5hGoFmpsaMam+KTRJoWnf2U65lRwxKx3aEY0bvFWrGrooafTp/0saeouZ8rnWicAZYOl4yOYZdOiYyQRJ0TkIqqnpgmnayRwotPm7+SXaL8meeQRZMvmJGSuIsYngCOhoxpnD2JtpNai5WJg4eakWObeIbyjPOHRZeIh9+OZYjXhv2Q84zJiQeUj5L5kEeV2pT6kx2Tk4rZibOU/4Vulm6V3oLxicCKupkRicWFS4uki1yMcYw/kxmUHIxDkqqgqqJ4l7+To4YfirCR5Y0Okla6zqrOlb+Un5SGmSuLr4wsipSWbJ2dn4iLQZL8ipmDVI74kx6MlJUdnZmogJmKnJWM949dovGOc4UNi3OFDYl6jZ2EPZKzflt6En6VlSKHpo4pjmCXgYaQhcmF+4ifh2GT44l/oIWWXIkGjxiRdJC4koWUy6LYkbiINo/9kLCBDZSNgzeSs4ZShBmIQZXCnoGqa5CbkLeOjY/Mn7aNFa1SpfGLk4LYgziRVpTpjlGFjIu2gxKNroOUhUKDSIMDl8iScYbvmOuGrn5miUGCgoLOiMOIZ4rghAeAt4IJhnN+2oD8hcC7C7ETqDKP5acLjaGMOoR4iJWHtYrwgRmA5Y0WfU2RYIfCjoiFBH9iiwCP5oh3jySPQInvib19YI0Si9eAhpXKjs2LoYwYd/6OCYeyigeUQ4mxhluCYIGwk6t9lpcUhPyKP5FpjreKZYHIh4SFDoZmg2CPy4oIhvKACIEXhMWNboovkfyXlXULii1/goZYv1q4U6I0kBGQ8n71gX+TYYCggAmMHY2eineOporSgXSZkoywhZqTxpVhj/uT2o1pmduL+oPrgJ+HZJNUmMSUMJBnfD+DyoaXiXOG/oPXju2Js41Wj76D34KOjUeCpo/7hE6PQJIYlSGAVYL4iHyByoKcgjWLA5OQj8GPpZJagbiKlJI/hguaFYDqjAaAw4k=</binary>
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diff changeset
2012 </binaryDataArray>
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diff changeset
2013 </binaryDataArrayList>
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diff changeset
2014 </spectrum>
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galaxyp
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diff changeset
2015 <spectrum index="36" id="controllerType=0 controllerNumber=1 scan=37" defaultArrayLength="572">
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diff changeset
2016 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
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2017 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="2"/>
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2018 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
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diff changeset
2019 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
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2020 <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="736.633056640625" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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2021 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="2.982659375e05" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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2022 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="1.04157375e06"/>
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2023 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="228.148010253906" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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2024 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1503.574340820313" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
2025 <scanList count="1">
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2026 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
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2027 <scan instrumentConfigurationRef="IC2">
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2028 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="0.364755" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
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2029 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="ITMS + c ESI d Full ms2 810.73@cid35.00 [210.00-1635.00]"/>
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2030 <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="3"/>
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2031 <cvParam cvRef="MS" accession="MS:1000927" name="ion injection time" value="11.512071609497" unitCvRef="UO" unitAccession="UO:0000028" unitName="millisecond"/>
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2032 <userParam name="[Thermo Trailer Extra]Monoisotopic M/Z:" value="0" type="xsd:float"/>
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2033 <scanWindowList count="1">
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2034 <scanWindow>
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2035 <cvParam cvRef="MS" accession="MS:1000501" name="scan window lower limit" value="210.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2036 <cvParam cvRef="MS" accession="MS:1000500" name="scan window upper limit" value="1635.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2037 </scanWindow>
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2038 </scanWindowList>
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2039 </scan>
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2040 </scanList>
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2041 <precursorList count="1">
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diff changeset
2342 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2343 <cvParam cvRef="MS" accession="MS:1002312" name="MS-Numpress linear prediction compression" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2344 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2345 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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2346 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2347 <binaryDataArray encodedLength="3592">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2348 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2349 <cvParam cvRef="MS" accession="MS:1002314" name="MS-Numpress short logged float compression" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
parents:
diff changeset
2350 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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