Mercurial > repos > galaxyp > msconvert_win

annotate job_conf.xml.sample @ 0:f8cf3be564bb draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
author galaxyp
date Fri, 08 Apr 2016 16:09:02 -0400
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0
f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1 <?xml version="1.0"?>
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2 <job_conf>
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3 <plugins workers="4">
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4 <!-- "workers" is the number of threads for the runner's work queue.
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5 The default from <plugins> is used if not defined for a <plugin>.
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6 -->
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7 <plugin id="plugin_local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/>
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8 <plugin id="plugin_pulsar_rest" type="runner" load="galaxy.jobs.runners.pulsar:PulsarRESTJobRunner">
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9 <!-- Allow optimized HTTP calls with libcurl (defaults to urllib) -->
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10 <!-- <param id="transport">curl</param> -->
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11 <!-- *Experimental Caching*: Next parameter enables caching.
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12 Likely will not work with newer features such as MQ support.
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13 If this is enabled be sure to specify a `file_cache_dir` in
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14 the remote Pulsar's servers main configuration file.
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15 -->
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16 <!-- <param id="cache">True</param> -->
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17 </plugin>
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18 </plugins>
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19
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20 <destinations default="destination_local">
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21 <destination id="destination_local" runner="plugin_local"/>
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22
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23 <destination id="destination_winserver_pulsar_rest" runner="plugin_pulsar_rest">
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24 <param id="manager">_default_</param>
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25 <param id="url">http://winserver.myu.edu:8900/</param>
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26 <!-- If set, private_token must match token in remote Pulsar's
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27 configuration. -->
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28 <param id="private_token">your_ultra-secret_magic_token_here</param>
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29 <!-- Uncomment the following statement to disable file staging (e.g.
f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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30 if there is a shared file system between Galaxy and the Pulsar
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31 server). Alternatively action can be set to 'copy' - to replace
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32 http transfers with file system copies, 'remote_transfer' to cause
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33 the Pulsar to initiate HTTP transfers instead of Galaxy, or
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34 'remote_copy' to cause Pulsar to initiate file system copies.
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35 If setting this to 'remote_transfer' be sure to specify a
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36 'galaxy_url' attribute on the runner plugin above.
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37 -->
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38 <!-- <param id="default_file_action">none</param> -->
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39 <!-- The above option is just the default, the transfer behavior
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40 none|copy|http can be configured on a per path basis via the
f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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41 following file. See Pulsar documentation for more details and
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42 examples.
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43 -->
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44 <!-- <param id="file_action_config">file_actions.yaml</param> -->
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45 <!-- The non-legacy Pulsar runners will attempt to resolve Galaxy
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46 dependencies remotely - to enable this set a tool_dependency_dir
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47 in Pulsar's configuration (can work with all the same dependency
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48 resolutions mechanisms as Galaxy - tool Shed installs, Galaxy
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49 packages, etc...). To disable this behavior, set the follow parameter
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50 to none. To generate the dependency resolution command locally
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51 set the following parameter local.
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52 -->
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53 <!-- <param id="dependency_resolution">none</params> -->
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54 <!-- Uncomment following option to enable setting metadata on remote
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55 Pulsar server. The 'use_remote_datatypes' option is available for
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56 determining whether to use remotely configured datatypes or local
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57 ones (both alternatives are a little brittle).
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58 -->
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59 <!-- <param id="remote_metadata">true</param> -->
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60 <!-- <param id="use_remote_datatypes">false</param> -->
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61 <!-- <param id="remote_property_galaxy_home">/path/to/remote/galaxy-central</param> -->
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62 <!-- If remote Pulsar server is configured to run jobs as the real user,
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63 uncomment the following line to pass the current Galaxy user
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64 along.
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65 -->
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66 <!-- <param id="submit_user">$__user_name__</param> -->
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67 <!-- Various other submission parameters can be passed along to the Pulsar
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68 whose use will depend on the remote Pulsar's configured job manager.
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69 For instance:
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70 -->
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71 <!-- <param id="submit_native_specification">-P bignodes -R y -pe threads 8</param> -->
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72 <!-- Disable parameter rewriting and rewrite generated commands
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73 instead. This may be required if remote host is Windows machine
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74 but probably not otherwise.
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75 -->
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76 <!-- <param id="rewrite_parameters">false</params> -->
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77 </destination>
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78
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79 </destinations>
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80
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81 <tools>
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82 <tool id="msconvert_win" destination="destination_winserver_pulsar_rest"/>
f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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83 </tools>
f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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84
f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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85 </job_conf>
f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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f8cf3be564bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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