msgfplus: test-data/201208-378803-msgf_20161026-2mmu-tryptic-many

annotate test-data/201208-378803-msgf_20161026-2mmu-tryptic-many_mods.mzid @ 5:ce4882b95b73 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit a030bdf85b5d74b7c1a16926322e47154b120fea

author	galaxyp
date	Wed, 13 Sep 2017 15:57:41 -0400
parents	058a2ab1d462
children	09e0ae6f661b

rev	line source
2 058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1 <?xml version="1.0" encoding="UTF-8"?>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	2 <MzIdentML xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" id="MS-GF+" version="1.1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2016-11-10T20:39:33">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	4 <cv fullName="PSI-MS" version="3.30.0" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" id="PSI-MS"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	5 <cv fullName="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" id="UNIMOD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	6 <cv fullName="UNIT-ONTOLOGY" uri="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" id="UO"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	7 </cvList>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	8 <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	9 <AnalysisSoftware version="Release (v2016.10.26)" id="ID_software" name="MS-GF+">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	10 <SoftwareName>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	11 <cvParam cvRef="PSI-MS" accession="MS:1002048" name="MS-GF+"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	12 </SoftwareName>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	13 </AnalysisSoftware>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	14 </AnalysisSoftwareList>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	15 <SequenceCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	16 <DBSequence length="206" searchDatabase_ref="SearchDB_1" accession="gi\|528953238\|ref\|XP_005208082.1\|" id="DBSeq23283">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	17 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528953238\|ref\|XP_005208082.1\| PREDICTED: alpha-S1-casein isoform X3 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	18 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	19 <DBSequence length="206" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528953238\|ref\|XP_005208082.1\|" id="DBSeq79258"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	20 <DBSequence length="811" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528968106\|ref\|XP_005212568.1\|" id="DBSeq84448"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	21 <DBSequence length="811" searchDatabase_ref="SearchDB_1" accession="gi\|528968106\|ref\|XP_005212568.1\|" id="DBSeq28473">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	22 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528968106\|ref\|XP_005212568.1\| PREDICTED: exocyst complex component 6B isoform X2 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	23 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	24 <DBSequence length="7610" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528944676\|ref\|XP_005204734.1\|" id="DBSeq65480"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	25 <DBSequence length="5498" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528944678\|ref\|XP_005204735.1\|" id="DBSeq73091"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	26 <DBSequence length="5422" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|219804516\|ref\|NP_001137332.1\|" id="DBSeq94489"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	27 <DBSequence length="7610" searchDatabase_ref="SearchDB_1" accession="gi\|528944676\|ref\|XP_005204734.1\|" id="DBSeq9505">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	28 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528944676\|ref\|XP_005204734.1\| PREDICTED: microtubule-actin cross-linking factor 1 isoform X1 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	29 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	30 <DBSequence length="5498" searchDatabase_ref="SearchDB_1" accession="gi\|528944678\|ref\|XP_005204735.1\|" id="DBSeq17116">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	31 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528944678\|ref\|XP_005204735.1\| PREDICTED: microtubule-actin cross-linking factor 1 isoform X2 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	32 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	33 <DBSequence length="5422" searchDatabase_ref="SearchDB_1" accession="gi\|219804516\|ref\|NP_001137332.1\|" id="DBSeq38514">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	34 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|219804516\|ref\|NP_001137332.1\| microtubule-actin cross-linking factor 1 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	35 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	36 <DBSequence length="607" searchDatabase_ref="SearchDB_1" accession="gi\|30794280\|ref\|NP_851335.1\|" id="DBSeq43937">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	37 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|30794280\|ref\|NP_851335.1\| serum albumin precursor [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	38 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	39 <DBSequence length="607" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|30794280\|ref\|NP_851335.1\|" id="DBSeq99912"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	40 <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|358414198\|ref\|XP_002700672.2\|" id="DBSeq104353"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	41 <DBSequence length="1131" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528966552\|ref\|XP_005211956.1\|" id="DBSeq107227"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	42 <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528966554\|ref\|XP_005211957.1\|" id="DBSeq108359"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	43 <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|297479727\|ref\|XP_002690982.1\|" id="DBSeq109459"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	44 <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="gi\|358414198\|ref\|XP_002700672.2\|" id="DBSeq48378">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	45 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|358414198\|ref\|XP_002700672.2\| PREDICTED: LOW QUALITY PROTEIN: solute carrier family 12 member 1 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	46 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	47 <DBSequence length="1131" searchDatabase_ref="SearchDB_1" accession="gi\|528966552\|ref\|XP_005211956.1\|" id="DBSeq51252">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	48 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528966552\|ref\|XP_005211956.1\| PREDICTED: solute carrier family 12 member 1 isoform X2 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	49 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	50 <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="gi\|528966554\|ref\|XP_005211957.1\|" id="DBSeq52384">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	51 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528966554\|ref\|XP_005211957.1\| PREDICTED: solute carrier family 12 member 1 isoform X3 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	52 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	53 <DBSequence length="1099" searchDatabase_ref="SearchDB_1" accession="gi\|297479727\|ref\|XP_002690982.1\|" id="DBSeq53484">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	54 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|297479727\|ref\|XP_002690982.1\| PREDICTED: solute carrier family 12 member 1 isoform X1 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	55 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	56 <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528995061\|ref\|XP_005220351.1\|" id="DBSeq89236"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	57 <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|528995063\|ref\|XP_005220352.1\|" id="DBSeq89542"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	58 <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|27806505\|ref\|NP_776558.1\|" id="DBSeq100520"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	59 <DBSequence length="690" searchDatabase_ref="SearchDB_1" accession="XXX_gi\|329665078\|ref\|NP_001193236.1\|" id="DBSeq101624"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	60 <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="gi\|528995061\|ref\|XP_005220351.1\|" id="DBSeq33261">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	61 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528995061\|ref\|XP_005220351.1\| PREDICTED: polyubiquitin-B isoform X1 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	62 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	63 <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="gi\|528995063\|ref\|XP_005220352.1\|" id="DBSeq33567">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	64 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528995063\|ref\|XP_005220352.1\| PREDICTED: polyubiquitin-B isoform X2 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	65 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	66 <DBSequence length="305" searchDatabase_ref="SearchDB_1" accession="gi\|27806505\|ref\|NP_776558.1\|" id="DBSeq44545">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	67 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|27806505\|ref\|NP_776558.1\| polyubiquitin-B [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	68 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	69 <DBSequence length="690" searchDatabase_ref="SearchDB_1" accession="gi\|329665078\|ref\|NP_001193236.1\|" id="DBSeq45649">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	70 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|329665078\|ref\|NP_001193236.1\| polyubiquitin-C [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	71 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	72 <DBSequence length="588" searchDatabase_ref="SearchDB_1" accession="gi\|528908812\|ref\|XP_609847.5\|" id="DBSeq3312">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	73 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528908812\|ref\|XP_609847.5\| PREDICTED: zinc finger protein 169 isoform X6 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	74 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	75 <DBSequence length="588" searchDatabase_ref="SearchDB_1" accession="gi\|528959657\|ref\|XP_002689899.2\|" id="DBSeq27068">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	76 <cvParam cvRef="PSI-MS" accession="MS:1001088" name="protein description" value="gi\|528959657\|ref\|XP_002689899.2\| PREDICTED: zinc finger protein 169 isoform X1 [Bos taurus]"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	77 </DBSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	78 <Peptide id="Pep_130--17128+16EAESISSSEQKHIQK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	79 <PeptideSequence>QMEAESISSSEQKHIQK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	80 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	81 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	82 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	83 <Modification location="0" monoisotopicMassDelta="-17.026549105">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	84 <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	85 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	86 <Modification location="2" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	87 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	88 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	89 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	90 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	91 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	92 <Modification location="17" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	93 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	94 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	95 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	96 <Peptide id="Pep_130--17IHKQESSSISEAE128+16QK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	97 <PeptideSequence>QIHKQESSSISEAEMQK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	98 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	99 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	100 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	101 <Modification location="0" monoisotopicMassDelta="-17.026549105">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	102 <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	103 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	104 <Modification location="4" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	105 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	106 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	107 <Modification location="15" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	108 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	109 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	110 <Modification location="17" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	111 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	112 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	113 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	114 <Peptide id="Pep_RFQAF128+16NNKRSTDK128+16K">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	115 <PeptideSequence>RFQAFMNNKRSTDKMK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	116 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	117 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	118 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	119 <Modification location="6" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	120 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	121 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	122 <Modification location="9" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	123 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	124 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	125 <Modification location="14" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	126 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	127 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	128 <Modification location="15" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	129 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	130 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	131 <Modification location="16" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	132 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	133 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	134 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	135 <Peptide id="Pep_129+16KDTSRKNN128+16FAQFRK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	136 <PeptideSequence>MKDTSRKNNMFAQFRK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	137 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	138 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	139 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	140 <Modification location="1" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	141 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	142 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	143 <Modification location="2" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	144 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	145 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	146 <Modification location="7" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	147 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	148 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	149 <Modification location="10" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	150 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	151 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	152 <Modification location="16" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	153 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	154 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	155 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	156 <Peptide id="Pep_RDDLLRQLLK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	157 <PeptideSequence>RDDLLRQLLK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	158 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	159 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	160 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	161 <Modification location="10" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	162 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	163 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	164 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	165 <Peptide id="Pep_LLQRLLDDRK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	166 <PeptideSequence>LLQRLLDDRK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	167 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	168 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	169 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	170 <Modification location="10" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	171 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	172 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	173 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	174 <Peptide id="Pep_NE128+16A128+16CGSNVRQK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	175 <PeptideSequence>NEMAMCGSNVRQK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	176 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	177 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	178 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	179 <Modification location="3" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	180 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	181 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	182 <Modification location="5" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	183 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	184 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	185 <Modification location="6" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	186 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	187 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	188 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	189 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	190 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	191 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	192 <Peptide id="Pep_QRVNSGC128+16A128+16ENK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	193 <PeptideSequence>QRVNSGCMAMENK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	194 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	195 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	196 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	197 <Modification location="7" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	198 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	199 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	200 <Modification location="8" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	201 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	202 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	203 <Modification location="10" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	204 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	205 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	206 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	207 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	208 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	209 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	210 <Peptide id="Pep_130--17ESSSISEAE128+16QK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	211 <PeptideSequence>QESSSISEAEMQK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	212 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	213 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	214 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	215 <Modification location="0" monoisotopicMassDelta="-17.026549105">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	216 <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	217 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	218 <Modification location="11" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	219 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	220 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	221 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	222 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	223 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	224 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	225 <Peptide id="Pep_130--17128+16EAESISSSEQK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	226 <PeptideSequence>QMEAESISSSEQK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	227 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	228 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	229 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	230 <Modification location="0" monoisotopicMassDelta="-17.026549105">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	231 <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	232 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	233 <Modification location="2" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	234 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	235 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	236 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	237 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	238 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	239 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	240 <Peptide id="Pep_LQKVAHDLMEIEGEPAPDRK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	241 <PeptideSequence>LQKVAHDLMEIEGEPAPDRK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	242 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	243 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	244 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	245 <Modification location="3" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	246 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	247 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	248 <Modification location="20" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	249 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	250 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	251 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	252 <Peptide id="Pep_RDPAPEGEIEMLDHAVKQLK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	253 <PeptideSequence>RDPAPEGEIEMLDHAVKQLK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	254 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	255 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	256 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	257 <Modification location="17" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	258 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	259 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	260 <Modification location="20" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	261 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	262 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	263 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	264 <Peptide id="Pep_ECCDKPLLEK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	265 <PeptideSequence>ECCDKPLLEK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	266 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	267 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	268 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	269 <Modification location="2" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	270 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	271 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	272 <Modification location="3" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	273 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	274 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	275 <Modification location="5" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	276 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	277 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	278 <Modification location="10" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	279 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	280 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	281 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	282 <Peptide id="Pep_ELLPKDCCEK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	283 <PeptideSequence>ELLPKDCCEK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	284 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	285 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	286 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	287 <Modification location="5" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	288 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	289 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	290 <Modification location="7" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	291 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	292 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	293 <Modification location="8" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	294 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	295 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	296 <Modification location="10" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	297 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	298 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	299 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	300 <Peptide id="Pep_VASLRETYGD128+16ADCCEK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	301 <PeptideSequence>VASLRETYGDMADCCEK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	302 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	303 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	304 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	305 <Modification location="11" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	306 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	307 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	308 <Modification location="14" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	309 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	310 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	311 <Modification location="15" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	312 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	313 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	314 <Modification location="17" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	315 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	316 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	317 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	318 <Peptide id="Pep_ECCDA128+16DGYTERLSAVK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	319 <PeptideSequence>ECCDAMDGYTERLSAVK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	320 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	321 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	322 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	323 <Modification location="2" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	324 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	325 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	326 <Modification location="3" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	327 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	328 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	329 <Modification location="6" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	330 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	331 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	332 <Modification location="17" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	333 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	334 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	335 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	336 <Peptide id="Pep_LPQGYHPNDVEEEWGK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	337 <PeptideSequence>LPQGYHPNDVEEEWGK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	338 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	339 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	340 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	341 <Modification location="16" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	342 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	343 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	344 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	345 <Peptide id="Pep_GWEEEVDNPHYGQPLK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	346 <PeptideSequence>GWEEEVDNPHYGQPLK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	347 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	348 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	349 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	350 <Modification location="16" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	351 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	352 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	353 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	354 <Peptide id="Pep_ILWAQKKAMGSNMEKVCLK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	355 <PeptideSequence>ILWAQKKAMGSNMEKVCLK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	356 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	357 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	358 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	359 <Modification location="6" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	360 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	361 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	362 <Modification location="7" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	363 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	364 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	365 <Modification location="15" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	366 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	367 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	368 <Modification location="17" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	369 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	370 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	371 <Modification location="19" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	372 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	373 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	374 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	375 <Peptide id="Pep_LCVKEMNSGMAKKQAWLIK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	376 <PeptideSequence>LCVKEMNSGMAKKQAWLIK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	377 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	378 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	379 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	380 <Modification location="2" monoisotopicMassDelta="57.021463735">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	381 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	382 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	383 <Modification location="4" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	384 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	385 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	386 <Modification location="12" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	387 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	388 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	389 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	390 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	391 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	392 <Modification location="19" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	393 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	394 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	395 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	396 <Peptide id="Pep_S128+16ENEDKEETVAK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	397 <PeptideSequence>SMENEDKEETVAK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	398 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	399 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	400 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	401 <Modification location="2" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	402 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	403 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	404 <Modification location="7" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	405 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	406 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	407 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	408 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	409 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	410 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	411 <Peptide id="Pep_AVTEEKDENE128+16SK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	412 <PeptideSequence>AVTEEKDENEMSK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	413 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	414 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	415 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	416 <Modification location="6" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	417 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	418 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	419 <Modification location="11" monoisotopicMassDelta="15.99491463">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	420 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	421 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	422 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	423 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	424 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	425 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	426 <Peptide id="Pep_VFIQMGGRLRLVLHLTSEK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	427 <PeptideSequence>VFIQMGGRLRLVLHLTSEK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	428 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	429 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	430 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	431 <Modification location="19" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	432 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	433 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	434 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	435 <Peptide id="Pep_ESTLHLVLRLRGGMQIFVK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	436 <PeptideSequence>ESTLHLVLRLRGGMQIFVK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	437 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	438 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	439 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	440 <Modification location="19" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	441 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	442 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	443 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	444 <Peptide id="Pep_MAFRDVAVAFTQK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	445 <PeptideSequence>MAFRDVAVAFTQK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	446 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	447 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	448 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	449 <Modification location="13" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	450 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	451 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	452 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	453 <Peptide id="Pep_130--17TVEAYSAAVQSQLQWMK">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	454 <PeptideSequence>QTVEAYSAAVQSQLQWMK</PeptideSequence>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	455 <Modification location="0" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	456 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	457 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	458 <Modification location="0" monoisotopicMassDelta="-17.026549105">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	459 <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	460 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	461 <Modification location="18" monoisotopicMassDelta="144.102063">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	462 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	463 </Modification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	464 </Peptide>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	465 <PeptideEvidence dBSequence_ref="DBSeq23283" peptide_ref="Pep_130--17128+16EAESISSSEQKHIQK" start="74" end="90" pre="K" post="E" isDecoy="false" id="PepEv_23356_130--17128+16EAESISSSEQKHIQK_74"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	466 <PeptideEvidence dBSequence_ref="DBSeq79258" peptide_ref="Pep_130--17IHKQESSSISEAE128+16QK" start="118" end="134" pre="K" post="I" isDecoy="true" id="PepEv_79375_130--17IHKQESSSISEAE128+16QK_118"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	467 <PeptideEvidence dBSequence_ref="DBSeq84448" peptide_ref="Pep_RFQAF128+16NNKRSTDK128+16K" start="27" end="42" pre="K" post="E" isDecoy="true" id="PepEv_84474_RFQAF128+16NNKRSTDK128+16K_27"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	468 <PeptideEvidence dBSequence_ref="DBSeq28473" peptide_ref="Pep_129+16KDTSRKNN128+16FAQFRK" start="771" end="786" pre="K" post="N" isDecoy="false" id="PepEv_29243_129+16KDTSRKNN128+16FAQFRK_771"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	469 <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_RDDLLRQLLK" start="2171" end="2180" pre="K" post="Q" isDecoy="true" id="PepEv_67650_RDDLLRQLLK_2171"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	470 <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_RDDLLRQLLK" start="2101" end="2110" pre="K" post="Q" isDecoy="true" id="PepEv_75191_RDDLLRQLLK_2101"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	471 <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_RDDLLRQLLK" start="2101" end="2110" pre="K" post="Q" isDecoy="true" id="PepEv_96589_RDDLLRQLLK_2101"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	472 <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_LLQRLLDDRK" start="5432" end="5441" pre="K" post="A" isDecoy="false" id="PepEv_14936_LLQRLLDDRK_5432"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	473 <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_LLQRLLDDRK" start="3390" end="3399" pre="K" post="A" isDecoy="false" id="PepEv_20505_LLQRLLDDRK_3390"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	474 <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_LLQRLLDDRK" start="3314" end="3323" pre="K" post="A" isDecoy="false" id="PepEv_41827_LLQRLLDDRK_3314"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	475 <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" start="2447" end="2459" pre="K" post="V" isDecoy="true" id="PepEv_67926_NE128+16A128+16CGSNVRQK_2447"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	476 <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" start="2377" end="2389" pre="K" post="V" isDecoy="true" id="PepEv_75467_NE128+16A128+16CGSNVRQK_2377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	477 <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" start="2377" end="2389" pre="K" post="V" isDecoy="true" id="PepEv_96865_NE128+16A128+16CGSNVRQK_2377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	478 <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" start="5153" end="5165" pre="K" post="L" isDecoy="false" id="PepEv_14657_QRVNSGC128+16A128+16ENK_5153"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	479 <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" start="3111" end="3123" pre="K" post="L" isDecoy="false" id="PepEv_20226_QRVNSGC128+16A128+16ENK_3111"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	480 <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" start="3035" end="3047" pre="K" post="L" isDecoy="false" id="PepEv_41548_QRVNSGC128+16A128+16ENK_3035"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	481 <PeptideEvidence dBSequence_ref="DBSeq79258" peptide_ref="Pep_130--17ESSSISEAE128+16QK" start="122" end="134" pre="K" post="I" isDecoy="true" id="PepEv_79379_130--17ESSSISEAE128+16QK_122"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	482 <PeptideEvidence dBSequence_ref="DBSeq23283" peptide_ref="Pep_130--17128+16EAESISSSEQK" start="74" end="86" pre="K" post="H" isDecoy="false" id="PepEv_23356_130--17128+16EAESISSSEQK_74"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	483 <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" start="4104" end="4123" pre="K" post="H" isDecoy="false" id="PepEv_13608_LQKVAHDLMEIEGEPAPDRK_4104"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	484 <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" start="2062" end="2081" pre="K" post="H" isDecoy="false" id="PepEv_19177_LQKVAHDLMEIEGEPAPDRK_2062"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	485 <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" start="1986" end="2005" pre="K" post="H" isDecoy="false" id="PepEv_40499_LQKVAHDLMEIEGEPAPDRK_1986"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	486 <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" start="3489" end="3508" pre="K" post="E" isDecoy="true" id="PepEv_68968_RDPAPEGEIEMLDHAVKQLK_3489"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	487 <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" start="3419" end="3438" pre="K" post="E" isDecoy="true" id="PepEv_76509_RDPAPEGEIEMLDHAVKQLK_3419"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	488 <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" start="3419" end="3438" pre="K" post="E" isDecoy="true" id="PepEv_97907_RDPAPEGEIEMLDHAVKQLK_3419"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	489 <PeptideEvidence dBSequence_ref="DBSeq43937" peptide_ref="Pep_ECCDKPLLEK" start="300" end="309" pre="K" post="S" isDecoy="false" id="PepEv_44236_ECCDKPLLEK_300"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	490 <PeptideEvidence dBSequence_ref="DBSeq99912" peptide_ref="Pep_ELLPKDCCEK" start="300" end="309" pre="K" post="L" isDecoy="true" id="PepEv_100211_ELLPKDCCEK_300"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	491 <PeptideEvidence dBSequence_ref="DBSeq43937" peptide_ref="Pep_VASLRETYGD128+16ADCCEK" start="101" end="117" pre="K" post="Q" isDecoy="false" id="PepEv_44037_VASLRETYGD128+16ADCCEK_101"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	492 <PeptideEvidence dBSequence_ref="DBSeq99912" peptide_ref="Pep_ECCDA128+16DGYTERLSAVK" start="492" end="508" pre="K" post="C" isDecoy="true" id="PepEv_100403_ECCDA128+16DGYTERLSAVK_492"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	493 <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_LPQGYHPNDVEEEWGK" start="468" end="483" pre="K" post="L" isDecoy="false" id="PepEv_9972_LPQGYHPNDVEEEWGK_468"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	494 <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_LPQGYHPNDVEEEWGK" start="468" end="483" pre="K" post="L" isDecoy="false" id="PepEv_17583_LPQGYHPNDVEEEWGK_468"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	495 <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_LPQGYHPNDVEEEWGK" start="392" end="407" pre="K" post="L" isDecoy="false" id="PepEv_38905_LPQGYHPNDVEEEWGK_392"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	496 <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_GWEEEVDNPHYGQPLK" start="7129" end="7144" pre="K" post="I" isDecoy="true" id="PepEv_72608_GWEEEVDNPHYGQPLK_7129"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	497 <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_GWEEEVDNPHYGQPLK" start="5017" end="5032" pre="K" post="I" isDecoy="true" id="PepEv_78107_GWEEEVDNPHYGQPLK_5017"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	498 <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_GWEEEVDNPHYGQPLK" start="5017" end="5032" pre="K" post="I" isDecoy="true" id="PepEv_99505_GWEEEVDNPHYGQPLK_5017"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	499 <PeptideEvidence dBSequence_ref="DBSeq104353" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_104712_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	500 <PeptideEvidence dBSequence_ref="DBSeq107227" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_107586_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	501 <PeptideEvidence dBSequence_ref="DBSeq108359" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_108718_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	502 <PeptideEvidence dBSequence_ref="DBSeq109459" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" start="360" end="378" pre="K" post="R" isDecoy="true" id="PepEv_109818_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	503 <PeptideEvidence dBSequence_ref="DBSeq48378" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="723" end="741" pre="K" post="N" isDecoy="false" id="PepEv_49100_LCVKEMNSGMAKKQAWLIK_723"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	504 <PeptideEvidence dBSequence_ref="DBSeq51252" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="755" end="773" pre="K" post="N" isDecoy="false" id="PepEv_52006_LCVKEMNSGMAKKQAWLIK_755"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	505 <PeptideEvidence dBSequence_ref="DBSeq52384" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="723" end="741" pre="K" post="N" isDecoy="false" id="PepEv_53106_LCVKEMNSGMAKKQAWLIK_723"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	506 <PeptideEvidence dBSequence_ref="DBSeq53484" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" start="723" end="741" pre="K" post="N" isDecoy="false" id="PepEv_54206_LCVKEMNSGMAKKQAWLIK_723"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	507 <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_S128+16ENEDKEETVAK" start="1113" end="1125" pre="K" post="M" isDecoy="false" id="PepEv_10617_S128+16ENEDKEETVAK_1113"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	508 <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_S128+16ENEDKEETVAK" start="1111" end="1123" pre="K" post="M" isDecoy="false" id="PepEv_18226_S128+16ENEDKEETVAK_1111"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	509 <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_S128+16ENEDKEETVAK" start="1035" end="1047" pre="K" post="M" isDecoy="false" id="PepEv_39548_S128+16ENEDKEETVAK_1035"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	510 <PeptideEvidence dBSequence_ref="DBSeq65480" peptide_ref="Pep_AVTEEKDENE128+16SK" start="6487" end="6499" pre="K" post="L" isDecoy="true" id="PepEv_71966_AVTEEKDENE128+16SK_6487"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	511 <PeptideEvidence dBSequence_ref="DBSeq73091" peptide_ref="Pep_AVTEEKDENE128+16SK" start="4377" end="4389" pre="K" post="L" isDecoy="true" id="PepEv_77467_AVTEEKDENE128+16SK_4377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	512 <PeptideEvidence dBSequence_ref="DBSeq94489" peptide_ref="Pep_AVTEEKDENE128+16SK" start="4377" end="4389" pre="K" post="L" isDecoy="true" id="PepEv_98865_AVTEEKDENE128+16SK_4377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	513 <PeptideEvidence dBSequence_ref="DBSeq89236" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="73" end="91" pre="K" post="Q" isDecoy="true" id="PepEv_89308_VFIQMGGRLRLVLHLTSEK_73"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	514 <PeptideEvidence dBSequence_ref="DBSeq89236" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="149" end="167" pre="K" post="Q" isDecoy="true" id="PepEv_89384_VFIQMGGRLRLVLHLTSEK_149"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	515 <PeptideEvidence dBSequence_ref="DBSeq89236" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="225" end="243" pre="K" post="Q" isDecoy="true" id="PepEv_89460_VFIQMGGRLRLVLHLTSEK_225"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	516 <PeptideEvidence dBSequence_ref="DBSeq89542" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="73" end="91" pre="K" post="Q" isDecoy="true" id="PepEv_89614_VFIQMGGRLRLVLHLTSEK_73"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	517 <PeptideEvidence dBSequence_ref="DBSeq89542" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="149" end="167" pre="K" post="Q" isDecoy="true" id="PepEv_89690_VFIQMGGRLRLVLHLTSEK_149"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	518 <PeptideEvidence dBSequence_ref="DBSeq89542" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="225" end="243" pre="K" post="Q" isDecoy="true" id="PepEv_89766_VFIQMGGRLRLVLHLTSEK_225"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	519 <PeptideEvidence dBSequence_ref="DBSeq100520" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="73" end="91" pre="K" post="Q" isDecoy="true" id="PepEv_100592_VFIQMGGRLRLVLHLTSEK_73"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	520 <PeptideEvidence dBSequence_ref="DBSeq100520" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="149" end="167" pre="K" post="Q" isDecoy="true" id="PepEv_100668_VFIQMGGRLRLVLHLTSEK_149"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	521 <PeptideEvidence dBSequence_ref="DBSeq100520" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="225" end="243" pre="K" post="Q" isDecoy="true" id="PepEv_100744_VFIQMGGRLRLVLHLTSEK_225"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	522 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="78" end="96" pre="K" post="Q" isDecoy="true" id="PepEv_101701_VFIQMGGRLRLVLHLTSEK_78"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	523 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="154" end="172" pre="K" post="Q" isDecoy="true" id="PepEv_101777_VFIQMGGRLRLVLHLTSEK_154"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	524 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="230" end="248" pre="K" post="Q" isDecoy="true" id="PepEv_101853_VFIQMGGRLRLVLHLTSEK_230"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	525 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="306" end="324" pre="K" post="Q" isDecoy="true" id="PepEv_101929_VFIQMGGRLRLVLHLTSEK_306"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	526 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="382" end="400" pre="K" post="Q" isDecoy="true" id="PepEv_102005_VFIQMGGRLRLVLHLTSEK_382"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	527 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="458" end="476" pre="K" post="Q" isDecoy="true" id="PepEv_102081_VFIQMGGRLRLVLHLTSEK_458"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	528 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="534" end="552" pre="K" post="Q" isDecoy="true" id="PepEv_102157_VFIQMGGRLRLVLHLTSEK_534"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	529 <PeptideEvidence dBSequence_ref="DBSeq101624" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" start="610" end="628" pre="K" post="Q" isDecoy="true" id="PepEv_102233_VFIQMGGRLRLVLHLTSEK_610"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	530 <PeptideEvidence dBSequence_ref="DBSeq33261" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_33324_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	531 <PeptideEvidence dBSequence_ref="DBSeq33261" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_33400_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	532 <PeptideEvidence dBSequence_ref="DBSeq33261" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_33476_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	533 <PeptideEvidence dBSequence_ref="DBSeq33567" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_33630_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	534 <PeptideEvidence dBSequence_ref="DBSeq33567" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_33706_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	535 <PeptideEvidence dBSequence_ref="DBSeq33567" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_33782_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	536 <PeptideEvidence dBSequence_ref="DBSeq44545" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_44608_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	537 <PeptideEvidence dBSequence_ref="DBSeq44545" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_44684_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	538 <PeptideEvidence dBSequence_ref="DBSeq44545" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_44760_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	539 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="64" end="82" pre="K" post="T" isDecoy="false" id="PepEv_45712_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	540 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="140" end="158" pre="K" post="T" isDecoy="false" id="PepEv_45788_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	541 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="216" end="234" pre="K" post="T" isDecoy="false" id="PepEv_45864_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	542 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="292" end="310" pre="K" post="T" isDecoy="false" id="PepEv_45940_ESTLHLVLRLRGGMQIFVK_292"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	543 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="368" end="386" pre="K" post="T" isDecoy="false" id="PepEv_46016_ESTLHLVLRLRGGMQIFVK_368"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	544 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="444" end="462" pre="K" post="T" isDecoy="false" id="PepEv_46092_ESTLHLVLRLRGGMQIFVK_444"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	545 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="520" end="538" pre="K" post="T" isDecoy="false" id="PepEv_46168_ESTLHLVLRLRGGMQIFVK_520"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	546 <PeptideEvidence dBSequence_ref="DBSeq45649" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" start="596" end="614" pre="K" post="T" isDecoy="false" id="PepEv_46244_ESTLHLVLRLRGGMQIFVK_596"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	547 <PeptideEvidence dBSequence_ref="DBSeq3312" peptide_ref="Pep_MAFRDVAVAFTQK" start="1" end="13" pre="-" post="E" isDecoy="false" id="PepEv_3312_MAFRDVAVAFTQK_1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	548 <PeptideEvidence dBSequence_ref="DBSeq27068" peptide_ref="Pep_MAFRDVAVAFTQK" start="1" end="13" pre="-" post="E" isDecoy="false" id="PepEv_27068_MAFRDVAVAFTQK_1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	549 <PeptideEvidence dBSequence_ref="DBSeq9505" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" start="831" end="848" pre="K" post="Q" isDecoy="false" id="PepEv_10335_130--17TVEAYSAAVQSQLQWMK_831"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	550 <PeptideEvidence dBSequence_ref="DBSeq17116" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" start="831" end="848" pre="K" post="Q" isDecoy="false" id="PepEv_17946_130--17TVEAYSAAVQSQLQWMK_831"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	551 <PeptideEvidence dBSequence_ref="DBSeq38514" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" start="755" end="772" pre="K" post="Q" isDecoy="false" id="PepEv_39268_130--17TVEAYSAAVQSQLQWMK_755"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	552 </SequenceCollection>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	553 <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	554 <SpectrumIdentification spectrumIdentificationProtocol_ref="SearchProtocol_1" spectrumIdentificationList_ref="SI_LIST_1" id="SpecIdent_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	555 <InputSpectra spectraData_ref="SID_1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	556 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	557 </SpectrumIdentification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	558 </AnalysisCollection>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	559 <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	560 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	561 <SearchType>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	562 <cvParam cvRef="PSI-MS" accession="MS:1001083" name="ms-ms search"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	563 </SearchType>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	564 <AdditionalSearchParams>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	565 <cvParam cvRef="PSI-MS" accession="MS:1001211" name="parent mass type mono"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	566 <cvParam cvRef="PSI-MS" accession="MS:1001256" name="fragment mass type mono"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	567 <userParam name="TargetDecoyApproach" value="true"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	568 <userParam name="MinIsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	569 <userParam name="MaxIsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	570 <userParam name="FragmentMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	571 <userParam name="Instrument" value="QExactive"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	572 <userParam name="Protocol" value="iTRAQ"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	573 <userParam name="NumTolerableTermini" value="2"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	574 <userParam name="NumMatchesPerSpec" value="2"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	575 <userParam name="MaxNumModifications" value="2"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	576 <userParam name="MinPepLength" value="10"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	577 <userParam name="MaxPepLength" value="20"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	578 <userParam name="MinCharge" value="2"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	579 <userParam name="MaxCharge" value="6"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	580 <userParam name="ChargeCarrierMass" value="1.00727649"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	581 </AdditionalSearchParams>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	582 <ModificationParams>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	583 <SearchModification fixedMod="true" massDelta="57.021465" residues="C">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	584 <cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	585 </SearchModification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	586 <SearchModification fixedMod="true" massDelta="144.10207" residues=".">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	587 <SpecificityRules>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	588 <cvParam cvRef="PSI-MS" accession="MS:1001189" name="modification specificity N-term"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	589 </SpecificityRules>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	590 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	591 </SearchModification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	592 <SearchModification fixedMod="true" massDelta="144.10207" residues="K">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	593 <cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	594 </SearchModification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	595 <SearchModification fixedMod="false" massDelta="15.994915" residues="M">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	596 <cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	597 </SearchModification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	598 <SearchModification fixedMod="false" massDelta="-17.026548" residues="Q">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	599 <SpecificityRules>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	600 <cvParam cvRef="PSI-MS" accession="MS:1001189" name="modification specificity N-term"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	601 </SpecificityRules>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	602 <cvParam cvRef="UNIMOD" accession="UNIMOD:28" name="Gln->pyro-Glu"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	603 </SearchModification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	604 <SearchModification fixedMod="false" massDelta="-58.005478" residues="G">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	605 <SpecificityRules>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	606 <cvParam cvRef="PSI-MS" accession="MS:1001190" name="modification specificity C-term"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	607 </SpecificityRules>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	608 <cvParam cvRef="UNIMOD" accession="UNIMOD:822" name="Gly-loss+Amide"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	609 </SearchModification>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	610 </ModificationParams>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	611 <Enzymes>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	612 <Enzyme semiSpecific="false" missedCleavages="1000" id="LysC">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	613 <EnzymeName>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	614 <cvParam cvRef="PSI-MS" accession="MS:1001309" name="Lys-C"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	615 </EnzymeName>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	616 </Enzyme>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	617 </Enzymes>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	618 <ParentTolerance>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	619 <cvParam cvRef="PSI-MS" accession="MS:1001412" name="search tolerance plus value" value="0.02" unitAccession="UO:0000221" unitName="dalton" unitCvRef="UO"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	620 <cvParam cvRef="PSI-MS" accession="MS:1001413" name="search tolerance minus value" value="0.02" unitAccession="UO:0000221" unitName="dalton" unitCvRef="UO"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	621 </ParentTolerance>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	622 <Threshold>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	623 <cvParam cvRef="PSI-MS" accession="MS:1001494" name="no threshold"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	624 </Threshold>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	625 </SpectrumIdentificationProtocol>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	626 </AnalysisProtocolCollection>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	627 <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	628 <Inputs>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	629 <SearchDatabase numDatabaseSequences="144" location="/private/tmp/tmp7jlHMg/job_working_directory/000/6/working/cow.protein.PRG2012-subset.fasta" id="SearchDB_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	630 <FileFormat>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	631 <cvParam cvRef="PSI-MS" accession="MS:1001348" name="FASTA format"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	632 </FileFormat>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	633 <DatabaseName>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	634 <userParam name="cow.protein.PRG2012-subset.fasta"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	635 </DatabaseName>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	636 <cvParam cvRef="PSI-MS" accession="MS:1001197" name="DB composition target+decoy"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	637 <cvParam cvRef="PSI-MS" accession="MS:1001283" name="decoy DB accession regexp" value="^XXX"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	638 <cvParam cvRef="PSI-MS" accession="MS:1001195" name="decoy DB type reverse"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	639 </SearchDatabase>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	640 <SpectraData location="/private/tmp/tmp7jlHMg/job_working_directory/000/6/working/201208-378803.mzML" id="SID_1" name="201208-378803.mzML">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	641 <FileFormat>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	642 <cvParam cvRef="PSI-MS" accession="MS:1000584" name="mzML file"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	643 </FileFormat>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	644 <SpectrumIDFormat>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	645 <cvParam cvRef="PSI-MS" accession="MS:1000770" name="WIFF nativeID format"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	646 </SpectrumIDFormat>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	647 </SpectraData>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	648 </Inputs>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	649 <AnalysisData>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	650 <SpectrumIdentificationList id="SI_LIST_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	651 <FragmentationTable>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	652 <Measure id="Measure_MZ">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	653 <cvParam cvRef="PSI-MS" accession="MS:1001225" name="product ion m/z" unitAccession="MS:1000040" unitName="m/z" unitCvRef="PSI-MS"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	654 </Measure>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	655 </FragmentationTable>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	656 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1212 experiment=4" spectraData_ref="SID_1" id="SIR_52">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	657 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="598.3059692382812" calculatedMassToCharge="598.56005859375" peptide_ref="Pep_130--17128+16EAESISSSEQKHIQK" rank="1" passThreshold="true" id="SII_52_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	658 <PeptideEvidenceRef peptideEvidence_ref="PepEv_23356_130--17128+16EAESISSSEQKHIQK_74"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	659 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-18"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	660 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="68"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	661 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="3.735076E-5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	662 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="1.5176361"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	663 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	664 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	665 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	666 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	667 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	668 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	669 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	670 <userParam name="MS2IonCurrent" value="443.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	671 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	672 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="598.3059692382812" calculatedMassToCharge="598.56005859375" peptide_ref="Pep_130--17IHKQESSSISEAE128+16QK" rank="2" passThreshold="true" id="SII_52_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	673 <PeptideEvidenceRef peptideEvidence_ref="PepEv_79375_130--17IHKQESSSISEAE128+16QK_118"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	674 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-23"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	675 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="68"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	676 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.1482805E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	677 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="4.6656933"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	678 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	679 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	680 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	681 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	682 <userParam name="ExplainedIonCurrentRatio" value="0.004514673"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	683 <userParam name="NTermIonCurrentRatio" value="0.004514673"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	684 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	685 <userParam name="MS2IonCurrent" value="443.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	686 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	687 <userParam name="MeanErrorAll" value="6.2688584"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	688 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	689 <userParam name="MeanErrorTop7" value="6.2688584"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	690 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	691 <userParam name="MeanRelErrorAll" value="6.2688584"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	692 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	693 <userParam name="MeanRelErrorTop7" value="6.2688584"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	694 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	695 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	696 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	697 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1229 experiment=2" spectraData_ref="SID_1" id="SIR_90">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	698 <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="522.6893920898438" calculatedMassToCharge="522.8875732421875" peptide_ref="Pep_RFQAF128+16NNKRSTDK128+16K" rank="1" passThreshold="true" id="SII_90_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	699 <PeptideEvidenceRef peptideEvidence_ref="PepEv_84474_RFQAF128+16NNKRSTDK128+16K_27"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	700 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-20"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	701 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="69"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	702 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="4.725597E-5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	703 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="1.9131106"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	704 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="0.5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	705 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="0.5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	706 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	707 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	708 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	709 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	710 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	711 <userParam name="MS2IonCurrent" value="817.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	712 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	713 <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="522.6893920898438" calculatedMassToCharge="522.8875732421875" peptide_ref="Pep_129+16KDTSRKNN128+16FAQFRK" rank="2" passThreshold="true" id="SII_90_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	714 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29243_129+16KDTSRKNN128+16FAQFRK_771"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	715 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-21"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	716 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="69"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	717 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="5.994706E-5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	718 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="2.4268968"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	719 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="0.5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	720 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="0.5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	721 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	722 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	723 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	724 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	725 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	726 <userParam name="MS2IonCurrent" value="817.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	727 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	728 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	729 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1214 experiment=5" spectraData_ref="SID_1" id="SIR_61">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	730 <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="519.6590576171875" calculatedMassToCharge="519.994140625" peptide_ref="Pep_RDDLLRQLLK" rank="1" passThreshold="true" id="SII_61_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	731 <PeptideEvidenceRef peptideEvidence_ref="PepEv_67650_RDDLLRQLLK_2171"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	732 <PeptideEvidenceRef peptideEvidence_ref="PepEv_75191_RDDLLRQLLK_2101"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	733 <PeptideEvidenceRef peptideEvidence_ref="PepEv_96589_RDDLLRQLLK_2101"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	734 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-12"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	735 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="47"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	736 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="7.9344725E-5"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	737 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="3.1367352"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	738 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	739 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	740 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	741 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	742 <userParam name="ExplainedIonCurrentRatio" value="0.004137931"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	743 <userParam name="NTermIonCurrentRatio" value="0.004137931"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	744 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	745 <userParam name="MS2IonCurrent" value="725.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	746 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	747 <userParam name="MeanErrorAll" value="17.95661"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	748 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	749 <userParam name="MeanErrorTop7" value="17.95661"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	750 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	751 <userParam name="MeanRelErrorAll" value="17.95661"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	752 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	753 <userParam name="MeanRelErrorTop7" value="17.95661"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	754 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	755 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	756 <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="519.6590576171875" calculatedMassToCharge="519.994140625" peptide_ref="Pep_LLQRLLDDRK" rank="2" passThreshold="true" id="SII_61_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	757 <PeptideEvidenceRef peptideEvidence_ref="PepEv_14936_LLQRLLDDRK_5432"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	758 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20505_LLQRLLDDRK_3390"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	759 <PeptideEvidenceRef peptideEvidence_ref="PepEv_41827_LLQRLLDDRK_3314"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	760 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-23"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	761 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="47"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	762 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="8.972333E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	763 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="35.470325"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	764 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	765 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	766 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	767 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	768 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	769 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	770 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	771 <userParam name="MS2IonCurrent" value="725.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	772 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	773 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	774 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1210 experiment=3" spectraData_ref="SID_1" id="SIR_44">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	775 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="461.7162170410156" calculatedMassToCharge="461.9718322753906" peptide_ref="Pep_NE128+16A128+16CGSNVRQK" rank="1" passThreshold="true" id="SII_44_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	776 <PeptideEvidenceRef peptideEvidence_ref="PepEv_67926_NE128+16A128+16CGSNVRQK_2447"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	777 <PeptideEvidenceRef peptideEvidence_ref="PepEv_75467_NE128+16A128+16CGSNVRQK_2377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	778 <PeptideEvidenceRef peptideEvidence_ref="PepEv_96865_NE128+16A128+16CGSNVRQK_2377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	779 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-17"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	780 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="57"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	781 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.6894571E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	782 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="6.763066"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	783 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	784 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	785 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	786 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	787 <userParam name="ExplainedIonCurrentRatio" value="0.0044247787"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	788 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	789 <userParam name="CTermIonCurrentRatio" value="0.0044247787"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	790 <userParam name="MS2IonCurrent" value="452.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	791 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	792 <userParam name="MeanErrorAll" value="16.15865"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	793 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	794 <userParam name="MeanErrorTop7" value="16.15865"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	795 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	796 <userParam name="MeanRelErrorAll" value="16.15865"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	797 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	798 <userParam name="MeanRelErrorTop7" value="16.15865"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	799 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	800 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	801 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="461.7162170410156" calculatedMassToCharge="461.9718322753906" peptide_ref="Pep_QRVNSGC128+16A128+16ENK" rank="2" passThreshold="true" id="SII_44_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	802 <PeptideEvidenceRef peptideEvidence_ref="PepEv_14657_QRVNSGC128+16A128+16ENK_5153"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	803 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20226_QRVNSGC128+16A128+16ENK_3111"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	804 <PeptideEvidenceRef peptideEvidence_ref="PepEv_41548_QRVNSGC128+16A128+16ENK_3035"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	805 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-30"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	806 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="57"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	807 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0018074971"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	808 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="72.35592"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	809 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	810 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	811 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	812 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	813 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	814 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	815 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	816 <userParam name="MS2IonCurrent" value="452.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	817 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	818 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	819 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1191 experiment=2" spectraData_ref="SID_1" id="SIR_8">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	820 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="435.7113037109375" calculatedMassToCharge="435.96044921875" peptide_ref="Pep_130--17ESSSISEAE128+16QK" rank="1" passThreshold="true" id="SII_8_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	821 <PeptideEvidenceRef peptideEvidence_ref="PepEv_79379_130--17ESSSISEAE128+16QK_122"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	822 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-28"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	823 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="40"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	824 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.7160356E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	825 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="6.869462"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	826 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	827 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	828 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	829 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	830 <userParam name="ExplainedIonCurrentRatio" value="0.044554457"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	831 <userParam name="NTermIonCurrentRatio" value="0.03217822"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	832 <userParam name="CTermIonCurrentRatio" value="0.012376238"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	833 <userParam name="MS2IonCurrent" value="404.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	834 <userParam name="NumMatchedMainIons" value="2"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	835 <userParam name="MeanErrorAll" value="19.003765"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	836 <userParam name="StdevErrorAll" value="0.682242"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	837 <userParam name="MeanErrorTop7" value="19.003765"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	838 <userParam name="StdevErrorTop7" value="0.682242"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	839 <userParam name="MeanRelErrorAll" value="-19.003765"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	840 <userParam name="StdevRelErrorAll" value="0.682242"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	841 <userParam name="MeanRelErrorTop7" value="-19.003765"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	842 <userParam name="StdevRelErrorTop7" value="0.682242"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	843 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	844 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="435.7113037109375" calculatedMassToCharge="435.96044921875" peptide_ref="Pep_130--17128+16EAESISSSEQK" rank="2" passThreshold="true" id="SII_8_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	845 <PeptideEvidenceRef peptideEvidence_ref="PepEv_23356_130--17128+16EAESISSSEQK_74"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	846 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-36"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	847 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="40"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	848 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="6.8353146E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	849 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="27.362448"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	850 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	851 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	852 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	853 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	854 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	855 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	856 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	857 <userParam name="MS2IonCurrent" value="404.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	858 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	859 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	860 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1209 experiment=2" spectraData_ref="SID_1" id="SIR_39">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	861 <SpectrumIdentificationItem chargeState="6" experimentalMassToCharge="452.254638671875" calculatedMassToCharge="452.25213623046875" peptide_ref="Pep_LQKVAHDLMEIEGEPAPDRK" rank="1" passThreshold="true" id="SII_39_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	862 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13608_LQKVAHDLMEIEGEPAPDRK_4104"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	863 <PeptideEvidenceRef peptideEvidence_ref="PepEv_19177_LQKVAHDLMEIEGEPAPDRK_2062"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	864 <PeptideEvidenceRef peptideEvidence_ref="PepEv_40499_LQKVAHDLMEIEGEPAPDRK_1986"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	865 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-24"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	866 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	867 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="1.8168578E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	868 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="7.461472"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	869 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	870 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	871 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	872 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	873 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	874 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	875 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	876 <userParam name="MS2IonCurrent" value="1024.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	877 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	878 <SpectrumIdentificationItem chargeState="6" experimentalMassToCharge="452.254638671875" calculatedMassToCharge="452.25213623046875" peptide_ref="Pep_RDPAPEGEIEMLDHAVKQLK" rank="2" passThreshold="true" id="SII_39_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	879 <PeptideEvidenceRef peptideEvidence_ref="PepEv_68968_RDPAPEGEIEMLDHAVKQLK_3489"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	880 <PeptideEvidenceRef peptideEvidence_ref="PepEv_76509_RDPAPEGEIEMLDHAVKQLK_3419"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	881 <PeptideEvidenceRef peptideEvidence_ref="PepEv_97907_RDPAPEGEIEMLDHAVKQLK_3419"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	882 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-40"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	883 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	884 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0029742222"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	885 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="122.14536"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	886 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	887 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	888 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	889 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	890 <userParam name="ExplainedIonCurrentRatio" value="0.001953125"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	891 <userParam name="NTermIonCurrentRatio" value="0.001953125"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	892 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	893 <userParam name="MS2IonCurrent" value="1024.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	894 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	895 <userParam name="MeanErrorAll" value="4.5456934"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	896 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	897 <userParam name="MeanErrorTop7" value="4.5456934"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	898 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	899 <userParam name="MeanRelErrorAll" value="4.5456934"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	900 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	901 <userParam name="MeanRelErrorTop7" value="4.5456934"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	902 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	903 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	904 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	905 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1213 experiment=5" spectraData_ref="SID_1" id="SIR_57">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	906 <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="575.3018188476562" calculatedMassToCharge="575.3076171875" peptide_ref="Pep_ECCDKPLLEK" rank="1" passThreshold="true" id="SII_57_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	907 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44236_ECCDKPLLEK_300"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	908 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-22"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	909 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="59"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	910 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="2.1942661E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	911 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="8.674592"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	912 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	913 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	914 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	915 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	916 <userParam name="ExplainedIonCurrentRatio" value="0.0014619883"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	917 <userParam name="NTermIonCurrentRatio" value="0.0014619883"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	918 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	919 <userParam name="MS2IonCurrent" value="684.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	920 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	921 <userParam name="MeanErrorAll" value="12.832601"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	922 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	923 <userParam name="MeanErrorTop7" value="12.832601"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	924 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	925 <userParam name="MeanRelErrorAll" value="12.832601"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	926 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	927 <userParam name="MeanRelErrorTop7" value="12.832601"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	928 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	929 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	930 <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="575.3018188476562" calculatedMassToCharge="575.3076171875" peptide_ref="Pep_ELLPKDCCEK" rank="2" passThreshold="true" id="SII_57_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	931 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100211_ELLPKDCCEK_300"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	932 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-26"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	933 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="59"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	934 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="4.269645E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	935 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="16.879189"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	936 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	937 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	938 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	939 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	940 <userParam name="ExplainedIonCurrentRatio" value="0.0058479533"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	941 <userParam name="NTermIonCurrentRatio" value="0.0058479533"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	942 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	943 <userParam name="MS2IonCurrent" value="684.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	944 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	945 <userParam name="MeanErrorAll" value="6.54115"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	946 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	947 <userParam name="MeanErrorTop7" value="6.54115"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	948 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	949 <userParam name="MeanRelErrorAll" value="-6.54115"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	950 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	951 <userParam name="MeanRelErrorTop7" value="-6.54115"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	952 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	953 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	954 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	955 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1218 experiment=2" spectraData_ref="SID_1" id="SIR_73">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	956 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="577.770751953125" calculatedMassToCharge="578.0166625976562" peptide_ref="Pep_VASLRETYGD128+16ADCCEK" rank="1" passThreshold="true" id="SII_73_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	957 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44037_VASLRETYGD128+16ADCCEK_101"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	958 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-24"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	959 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="78"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	960 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="3.0161935E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	961 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="12.255397"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	962 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	963 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	964 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	965 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	966 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	967 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	968 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	969 <userParam name="MS2IonCurrent" value="939.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	970 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	971 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="577.770751953125" calculatedMassToCharge="578.0166625976562" peptide_ref="Pep_ECCDA128+16DGYTERLSAVK" rank="2" passThreshold="true" id="SII_73_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	972 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100403_ECCDA128+16DGYTERLSAVK_492"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	973 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-40"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	974 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="78"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	975 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0042000134"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	976 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="170.65494"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	977 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	978 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	979 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	980 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	981 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	982 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	983 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	984 <userParam name="MS2IonCurrent" value="939.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	985 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	986 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	987 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1213 experiment=3" spectraData_ref="SID_1" id="SIR_55">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	988 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="547.2749633789062" calculatedMassToCharge="547.2743530273438" peptide_ref="Pep_LPQGYHPNDVEEEWGK" rank="1" passThreshold="true" id="SII_55_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	989 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9972_LPQGYHPNDVEEEWGK_468"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	990 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17583_LPQGYHPNDVEEEWGK_468"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	991 <PeptideEvidenceRef peptideEvidence_ref="PepEv_38905_LPQGYHPNDVEEEWGK_392"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	992 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-24"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	993 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="71"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	994 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="3.7047637E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	995 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="14.998364"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	996 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	997 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	998 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	999 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1000 <userParam name="ExplainedIonCurrentRatio" value="0.0031120332"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1001 <userParam name="NTermIonCurrentRatio" value="0.0031120332"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1002 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1003 <userParam name="MS2IonCurrent" value="964.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1004 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1005 <userParam name="MeanErrorAll" value="19.94787"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1006 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1007 <userParam name="MeanErrorTop7" value="19.94787"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1008 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1009 <userParam name="MeanRelErrorAll" value="-19.94787"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1010 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1011 <userParam name="MeanRelErrorTop7" value="-19.94787"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1012 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1013 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1014 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="547.2749633789062" calculatedMassToCharge="547.2743530273438" peptide_ref="Pep_GWEEEVDNPHYGQPLK" rank="2" passThreshold="true" id="SII_55_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1015 <PeptideEvidenceRef peptideEvidence_ref="PepEv_72608_GWEEEVDNPHYGQPLK_7129"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1016 <PeptideEvidenceRef peptideEvidence_ref="PepEv_78107_GWEEEVDNPHYGQPLK_5017"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1017 <PeptideEvidenceRef peptideEvidence_ref="PepEv_99505_GWEEEVDNPHYGQPLK_5017"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1018 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-38"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1019 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="71"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1020 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.003828229"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1021 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="154.98203"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1022 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1023 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1024 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1025 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1026 <userParam name="ExplainedIonCurrentRatio" value="0.0031120332"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1027 <userParam name="NTermIonCurrentRatio" value="0.0031120332"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1028 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1029 <userParam name="MS2IonCurrent" value="964.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1030 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1031 <userParam name="MeanErrorAll" value="13.475464"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1032 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1033 <userParam name="MeanErrorTop7" value="13.475464"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1034 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1035 <userParam name="MeanRelErrorAll" value="-13.475464"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1036 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1037 <userParam name="MeanRelErrorTop7" value="-13.475464"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1038 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1039 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1040 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1041 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1281 experiment=2" spectraData_ref="SID_1" id="SIR_103">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1042 <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="591.745361328125" calculatedMassToCharge="591.944091796875" peptide_ref="Pep_ILWAQKKAMGSNMEKVCLK" rank="1" passThreshold="true" id="SII_103_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1043 <PeptideEvidenceRef peptideEvidence_ref="PepEv_104712_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1044 <PeptideEvidenceRef peptideEvidence_ref="PepEv_107586_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1045 <PeptideEvidenceRef peptideEvidence_ref="PepEv_108718_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1046 <PeptideEvidenceRef peptideEvidence_ref="PepEv_109818_ILWAQKKAMGSNMEKVCLK_360"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1047 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-35"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1048 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="107"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1049 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="6.732259E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1050 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="27.551098"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1051 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1052 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1053 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1054 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1055 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1056 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1057 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1058 <userParam name="MS2IonCurrent" value="571.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1059 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1060 <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="591.745361328125" calculatedMassToCharge="591.944091796875" peptide_ref="Pep_LCVKEMNSGMAKKQAWLIK" rank="2" passThreshold="true" id="SII_103_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1061 <PeptideEvidenceRef peptideEvidence_ref="PepEv_49100_LCVKEMNSGMAKKQAWLIK_723"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1062 <PeptideEvidenceRef peptideEvidence_ref="PepEv_52006_LCVKEMNSGMAKKQAWLIK_755"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1063 <PeptideEvidenceRef peptideEvidence_ref="PepEv_53106_LCVKEMNSGMAKKQAWLIK_723"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1064 <PeptideEvidenceRef peptideEvidence_ref="PepEv_54206_LCVKEMNSGMAKKQAWLIK_723"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1065 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-40"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1066 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="107"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1067 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0014232383"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1068 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="58.244606"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1069 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1070 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1071 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1072 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1073 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1074 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1075 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1076 <userParam name="MS2IonCurrent" value="571.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1077 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1078 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1079 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1231 experiment=2" spectraData_ref="SID_1" id="SIR_96">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1080 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="490.2488098144531" calculatedMassToCharge="490.2491760253906" peptide_ref="Pep_S128+16ENEDKEETVAK" rank="1" passThreshold="true" id="SII_96_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1081 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10617_S128+16ENEDKEETVAK_1113"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1082 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18226_S128+16ENEDKEETVAK_1111"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1083 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39548_S128+16ENEDKEETVAK_1035"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1084 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-26"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1085 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="72"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1086 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="6.884119E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1087 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="27.557816"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1088 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1089 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1090 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1091 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1092 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1093 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1094 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1095 <userParam name="MS2IonCurrent" value="611.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1096 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1097 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="490.2488098144531" calculatedMassToCharge="490.2491760253906" peptide_ref="Pep_AVTEEKDENE128+16SK" rank="2" passThreshold="true" id="SII_96_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1098 <PeptideEvidenceRef peptideEvidence_ref="PepEv_71966_AVTEEKDENE128+16SK_6487"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1099 <PeptideEvidenceRef peptideEvidence_ref="PepEv_77467_AVTEEKDENE128+16SK_4377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1100 <PeptideEvidenceRef peptideEvidence_ref="PepEv_98865_AVTEEKDENE128+16SK_4377"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1101 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-32"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1102 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="72"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1103 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0018720039"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1104 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="74.93819"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1105 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1106 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1107 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1108 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1109 <userParam name="ExplainedIonCurrentRatio" value="0.0016366612"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1110 <userParam name="NTermIonCurrentRatio" value="0.0016366612"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1111 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1112 <userParam name="MS2IonCurrent" value="611.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1113 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1114 <userParam name="MeanErrorAll" value="18.694866"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1115 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1116 <userParam name="MeanErrorTop7" value="18.694866"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1117 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1118 <userParam name="MeanRelErrorAll" value="-18.694866"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1119 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1120 <userParam name="MeanRelErrorTop7" value="-18.694866"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1121 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1122 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1123 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1124 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1213 experiment=2" spectraData_ref="SID_1" id="SIR_54">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1125 <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="497.6971435546875" calculatedMassToCharge="497.8994140625" peptide_ref="Pep_VFIQMGGRLRLVLHLTSEK" rank="1" passThreshold="true" id="SII_54_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1126 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89308_VFIQMGGRLRLVLHLTSEK_73"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1127 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89384_VFIQMGGRLRLVLHLTSEK_149"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1128 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89460_VFIQMGGRLRLVLHLTSEK_225"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1129 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89614_VFIQMGGRLRLVLHLTSEK_73"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1130 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89690_VFIQMGGRLRLVLHLTSEK_149"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1131 <PeptideEvidenceRef peptideEvidence_ref="PepEv_89766_VFIQMGGRLRLVLHLTSEK_225"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1132 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100592_VFIQMGGRLRLVLHLTSEK_73"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1133 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100668_VFIQMGGRLRLVLHLTSEK_149"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1134 <PeptideEvidenceRef peptideEvidence_ref="PepEv_100744_VFIQMGGRLRLVLHLTSEK_225"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1135 <PeptideEvidenceRef peptideEvidence_ref="PepEv_101701_VFIQMGGRLRLVLHLTSEK_78"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1136 <PeptideEvidenceRef peptideEvidence_ref="PepEv_101777_VFIQMGGRLRLVLHLTSEK_154"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1137 <PeptideEvidenceRef peptideEvidence_ref="PepEv_101853_VFIQMGGRLRLVLHLTSEK_230"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1138 <PeptideEvidenceRef peptideEvidence_ref="PepEv_101929_VFIQMGGRLRLVLHLTSEK_306"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1139 <PeptideEvidenceRef peptideEvidence_ref="PepEv_102005_VFIQMGGRLRLVLHLTSEK_382"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1140 <PeptideEvidenceRef peptideEvidence_ref="PepEv_102081_VFIQMGGRLRLVLHLTSEK_458"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1141 <PeptideEvidenceRef peptideEvidence_ref="PepEv_102157_VFIQMGGRLRLVLHLTSEK_534"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1142 <PeptideEvidenceRef peptideEvidence_ref="PepEv_102233_VFIQMGGRLRLVLHLTSEK_610"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1143 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-35"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1144 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="80"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1145 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0011284485"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1146 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="46.180626"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1147 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1148 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1149 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1150 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1151 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1152 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1153 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1154 <userParam name="MS2IonCurrent" value="1027.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1155 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1156 <SpectrumIdentificationItem chargeState="5" experimentalMassToCharge="497.6971435546875" calculatedMassToCharge="497.8994140625" peptide_ref="Pep_ESTLHLVLRLRGGMQIFVK" rank="2" passThreshold="true" id="SII_54_2">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1157 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33324_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1158 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33400_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1159 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33476_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1160 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33630_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1161 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33706_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1162 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33782_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1163 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44608_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1164 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44684_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1165 <PeptideEvidenceRef peptideEvidence_ref="PepEv_44760_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1166 <PeptideEvidenceRef peptideEvidence_ref="PepEv_45712_ESTLHLVLRLRGGMQIFVK_64"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1167 <PeptideEvidenceRef peptideEvidence_ref="PepEv_45788_ESTLHLVLRLRGGMQIFVK_140"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1168 <PeptideEvidenceRef peptideEvidence_ref="PepEv_45864_ESTLHLVLRLRGGMQIFVK_216"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1169 <PeptideEvidenceRef peptideEvidence_ref="PepEv_45940_ESTLHLVLRLRGGMQIFVK_292"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1170 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46016_ESTLHLVLRLRGGMQIFVK_368"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1171 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46092_ESTLHLVLRLRGGMQIFVK_444"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1172 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46168_ESTLHLVLRLRGGMQIFVK_520"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1173 <PeptideEvidenceRef peptideEvidence_ref="PepEv_46244_ESTLHLVLRLRGGMQIFVK_596"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1174 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-39"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1175 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="80"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1176 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0021231007"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1177 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="86.88577"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1178 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1179 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1180 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1181 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1182 <userParam name="ExplainedIonCurrentRatio" value="9.7370986E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1183 <userParam name="NTermIonCurrentRatio" value="9.7370986E-4"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1184 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1185 <userParam name="MS2IonCurrent" value="1027.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1186 <userParam name="NumMatchedMainIons" value="1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1187 <userParam name="MeanErrorAll" value="1.8923733"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1188 <userParam name="StdevErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1189 <userParam name="MeanErrorTop7" value="1.8923733"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1190 <userParam name="StdevErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1191 <userParam name="MeanRelErrorAll" value="-1.8923733"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1192 <userParam name="StdevRelErrorAll" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1193 <userParam name="MeanRelErrorTop7" value="-1.8923733"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1194 <userParam name="StdevRelErrorTop7" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1195 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1196 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1197 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1283 experiment=2" spectraData_ref="SID_1" id="SIR_104">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1198 <SpectrumIdentificationItem chargeState="3" experimentalMassToCharge="591.3255615234375" calculatedMassToCharge="591.3304443359375" peptide_ref="Pep_MAFRDVAVAFTQK" rank="1" passThreshold="true" id="SII_104_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1199 <PeptideEvidenceRef peptideEvidence_ref="PepEv_3312_MAFRDVAVAFTQK_1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1200 <PeptideEvidenceRef peptideEvidence_ref="PepEv_27068_MAFRDVAVAFTQK_1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1201 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-26"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1202 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="85"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1203 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.0011559059"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1204 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="46.27207"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1205 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1206 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1207 <userParam name="IsotopeError" value="0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1208 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1209 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1210 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1211 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1212 <userParam name="MS2IonCurrent" value="1072.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1213 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1214 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1215 <SpectrumIdentificationResult spectrumID="sample=1 period=1 cycle=1428 experiment=2" spectraData_ref="SID_1" id="SIR_105">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1216 <SpectrumIdentificationItem chargeState="4" experimentalMassToCharge="585.301513671875" calculatedMassToCharge="585.5540161132812" peptide_ref="Pep_130--17TVEAYSAAVQSQLQWMK" rank="1" passThreshold="true" id="SII_105_1">
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1217 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10335_130--17TVEAYSAAVQSQLQWMK_831"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1218 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17946_130--17TVEAYSAAVQSQLQWMK_831"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1219 <PeptideEvidenceRef peptideEvidence_ref="PepEv_39268_130--17TVEAYSAAVQSQLQWMK_755"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1220 <cvParam cvRef="PSI-MS" accession="MS:1002049" name="MS-GF:RawScore" value="-47"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1221 <cvParam cvRef="PSI-MS" accession="MS:1002050" name="MS-GF:DeNovoScore" value="93"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1222 <cvParam cvRef="PSI-MS" accession="MS:1002052" name="MS-GF:SpecEValue" value="0.002895186"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1223 <cvParam cvRef="PSI-MS" accession="MS:1002053" name="MS-GF:EValue" value="118.0599"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1224 <cvParam cvRef="PSI-MS" accession="MS:1002054" name="MS-GF:QValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1225 <cvParam cvRef="PSI-MS" accession="MS:1002055" name="MS-GF:PepQValue" value="1.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1226 <userParam name="IsotopeError" value="-1"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1227 <userParam name="AssumedDissociationMethod" value="HCD"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1228 <userParam name="ExplainedIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1229 <userParam name="NTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1230 <userParam name="CTermIonCurrentRatio" value="0.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1231 <userParam name="MS2IonCurrent" value="330.0"/>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1232 </SpectrumIdentificationItem>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1233 </SpectrumIdentificationResult>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1234 </SpectrumIdentificationList>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1235 </AnalysisData>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1236 </DataCollection>
058a2ab1d462 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit b4871f9659a924a68430aed3a93f4f9bad733fd6 galaxyp parents: diff changeset	1237 </MzIdentML>

Mercurial > repos > galaxyp > msgfplus

annotate test-data/201208-378803-msgf_20161026-2mmu-tryptic-many_mods.mzid @ 5:ce4882b95b73 draft