# HG changeset patch # User galaxyp # Date 1484252702 18000 # Node ID b4ccaf21855d3d83eb9a12957d8b9870f2deffdb # Parent 058a2ab1d46230fb97f0b07c13cb1dc9cfb9d3e3 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit 498437250b9fa438abd6865b7e9ba71298599ee7 diff -r 058a2ab1d462 -r b4ccaf21855d msgfplus.xml --- a/msgfplus.xml Wed Dec 07 16:43:17 2016 -0500 +++ b/msgfplus.xml Thu Jan 12 15:25:02 2017 -0500 @@ -4,7 +4,6 @@ msgf_plus - C @@ -56,6 +55,13 @@ -maxCharge $advanced.maxCharge -n $advanced.n -addFeatures $advanced.addFeatures + #if $tsvcheck + && + msgf_plus + edu.ucsd.msjava.ui.MzIDToTsv + -i '$output_name' + -o output.tsv + #end if && mv '$output_name' output ]]> @@ -75,6 +81,7 @@ label="Collection: Pairs of FASTA database (forward) and spectra (reverse)"/> + @@ -217,12 +224,15 @@ + + tsvcheck + - - - + + + @@ -232,21 +242,39 @@ - - - + + + + + + + + + + + + + + + + + + + + + - + - - - + + + diff -r 058a2ab1d462 -r b4ccaf21855d test-data/201208-378803-msgf_20161026-50ppm-semitryptic-no_mods.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/201208-378803-msgf_20161026-50ppm-semitryptic-no_mods.tsv Thu Jan 12 15:25:02 2017 -0500 @@ -0,0 +1,58 @@ +#SpecFile SpecID ScanNum FragMethod Precursor IsotopeError PrecursorError(ppm) Charge Peptide Protein DeNovoScore MSGFScore SpecEValue EValue QValue PepQValue +201208-378803.mzML sample=1 period=1 cycle=1209 experiment=2 -1 HCD 452.25464 1 -28.719826 3 PKNDPKLKTQGK gi|528993971|ref|XP_005219929.1|(pre=F,post=C);gi|528993973|ref|XP_005219930.1|(pre=F,post=C);gi|528993975|ref|XP_005219931.1|(pre=F,post=C);gi|27806851|ref|NP_776358.1|(pre=F,post=C) 54 7 8.911494E-7 0.0355328 0.5 0.5 +201208-378803.mzML sample=1 period=1 cycle=1215 experiment=4 -1 HCD 674.35315 1 -2.036408 2 EPISVSSQQMLK gi|30466252|ref|NP_848667.1|(pre=K,post=F) 62 -1 1.9064777E-6 0.076016985 0.5 0.5 +201208-378803.mzML sample=1 period=1 cycle=1219 experiment=4 -1 HCD 482.2116 0 -38.413548 2 PTAEFQDR gi|32880221|ref|NP_872593.1|(pre=V,post=I) 45 -4 2.6478965E-6 0.10364397 0.5 0.5 +201208-378803.mzML sample=1 period=1 cycle=1207 experiment=3 -1 HCD 467.23608 0 0.71846676 3 TVMENFVAFVDK gi|30794280|ref|NP_851335.1|(pre=K,post=C) 57 -6 3.189995E-6 0.12719467 0.5 0.5 +201208-378803.mzML sample=1 period=1 cycle=1212 experiment=4 -1 HCD 598.30597 0 -30.093014 3 KKYMRWMNHKKSR gi|528944676|ref|XP_005204734.1|(pre=R,post=V);gi|528944678|ref|XP_005204735.1|(pre=R,post=V);gi|219804516|ref|NP_001137332.1|(pre=R,post=V) 65 -8 8.5034735E-6 0.34040257 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1217 experiment=2 -1 HCD 501.74426 0 -40.019917 2 LAEAEKEGR gi|528944676|ref|XP_005204734.1|(pre=T,post=L) 81 15 8.546935E-6 0.3362706 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1223 experiment=2 -1 HCD 610.7609 0 -38.472713 2 AEMFEHLSEK gi|528944676|ref|XP_005204734.1|(pre=Q,post=L);gi|528944678|ref|XP_005204735.1|(pre=Q,post=L);gi|219804516|ref|NP_001137332.1|(pre=Q,post=L) 96 3 8.9886025E-6 0.35534644 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1210 experiment=2 -1 HCD 597.28906 1 -5.9811645 2 PNTEPTHHFI gi|528928354|ref|XP_005193233.1|(pre=R,post=H) 93 0 1.0661531E-5 0.42148226 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1217 experiment=4 -1 HCD 571.8232 1 -41.180023 2 QLEDILVLAK gi|528944676|ref|XP_005204734.1|(pre=K,post=Q);gi|528944678|ref|XP_005204735.1|(pre=K,post=Q);gi|219804516|ref|NP_001137332.1|(pre=K,post=Q) 59 -1 1.18926155E-5 0.47015077 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1223 experiment=3 -1 HCD 478.24365 0 -42.496838 2 AAQGALQPSL gi|528921178|ref|XP_592304.7|(pre=K,post=Y);gi|528921180|ref|XP_005195747.1|(pre=K,post=Y);gi|528995523|ref|XP_002695913.2|(pre=K,post=Y) 56 -16 1.2600591E-5 0.49813917 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1214 experiment=5 -1 HCD 519.65906 0 35.002014 3 VNPVTALTLLEKMK gi|528968106|ref|XP_005212568.1|(pre=R,post=D) 56 -5 1.9413415E-5 0.780167 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1231 experiment=2 -1 HCD 490.2488 1 4.9017324 3 TIFDTEIESTSPK gi|528968104|ref|XP_005212567.1|(pre=Y,post=S);gi|528968106|ref|XP_005212568.1|(pre=Y,post=S);gi|528968108|ref|XP_005212569.1|(pre=Y,post=S);gi|115497338|ref|NP_001069884.1|(pre=Y,post=S) 65 -18 2.1515163E-5 0.8612735 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1220 experiment=2 -1 HCD 410.21426 1 -45.215214 3 QLEGRLQDLR gi|528944676|ref|XP_005204734.1|(pre=E,post=A) 51 -8 2.3277607E-5 0.9202336 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1181 experiment=2 -1 HCD 506.74472 1 -13.802416 2 LECTNLYR gi|528944676|ref|XP_005204734.1|(pre=R,post=K);gi|528944678|ref|XP_005204735.1|(pre=R,post=K);gi|219804516|ref|NP_001137332.1|(pre=R,post=K) 35 -17 2.9523253E-5 1.1555992 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1202 experiment=2 -1 HCD 489.23615 0 -25.636705 3 LMLLSRDDSGSGSK gi|528944676|ref|XP_005204734.1|(pre=R,post=T);gi|528944678|ref|XP_005204735.1|(pre=R,post=T);gi|219804516|ref|NP_001137332.1|(pre=R,post=T) 75 -17 3.1620126E-5 1.270718 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1222 experiment=2 -1 HCD 582.2852 0 -48.73894 3 IQNGALNCEEKLTLAK gi|528944676|ref|XP_005204734.1|(pre=K,post=N);gi|528944678|ref|XP_005204735.1|(pre=K,post=N);gi|219804516|ref|NP_001137332.1|(pre=K,post=N) 94 -17 3.4877667E-5 1.4119875 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1229 experiment=3 -1 HCD 710.8027 0 12.279265 2 CVCDECGRGFGFK gi|528908802|ref|XP_005199340.1|(pre=P,post=S);gi|528908804|ref|XP_005199341.1|(pre=P,post=S);gi|528908806|ref|XP_005199342.1|(pre=P,post=S);gi|528908808|ref|XP_005199343.1|(pre=P,post=S);gi|528908810|ref|XP_005199344.1|(pre=P,post=S);gi|528908812|ref|XP_609847.5|(pre=P,post=S);gi|528959647|ref|XP_005210511.1|(pre=P,post=S);gi|528959649|ref|XP_005210512.1|(pre=P,post=S);gi|528959651|ref|XP_005210513.1|(pre=P,post=S);gi|528959653|ref|XP_005210514.1|(pre=P,post=S);gi|528959655|ref|XP_005210515.1|(pre=P,post=S);gi|528959657|ref|XP_002689899.2|(pre=P,post=S) 53 -24 3.7364465E-5 1.495737 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1219 experiment=2 -1 HCD 487.24332 0 -15.908564 3 RSDVEQLDQEIK gi|528944676|ref|XP_005204734.1|(pre=I,post=E);gi|528944678|ref|XP_005204735.1|(pre=I,post=E);gi|219804516|ref|NP_001137332.1|(pre=I,post=E) 80 -10 4.2131483E-5 1.6799086 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1228 experiment=3 -1 HCD 606.27484 1 -8.0082855 2 WQEYQSRVD gi|528944676|ref|XP_005204734.1|(pre=R,post=S);gi|528944678|ref|XP_005204735.1|(pre=R,post=S);gi|219804516|ref|NP_001137332.1|(pre=R,post=S) 36 -21 4.2569478E-5 1.6748536 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1209 experiment=3 -1 HCD 570.7028 1 20.262213 3 RKFIIHRGKRKAAQ gi|528921178|ref|XP_592304.7|(pre=K,post=G);gi|528921180|ref|XP_005195747.1|(pre=K,post=G);gi|528995523|ref|XP_002695913.2|(pre=K,post=G) 89 -13 4.495753E-5 1.8067082 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1216 experiment=2 -1 HCD 464.21527 1 -44.885506 3 QLAQQTEQKGCR gi|528944676|ref|XP_005204734.1|(pre=S,post=A) 61 -17 4.9378592E-5 1.9688725 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1212 experiment=2 -1 HCD 653.3102 1 29.944271 3 VFEEMIEPYCLHESCK gi|358414198|ref|XP_002700672.2|(pre=K,post=D);gi|528966552|ref|XP_005211956.1|(pre=K,post=D);gi|528966554|ref|XP_005211957.1|(pre=K,post=D);gi|297479727|ref|XP_002690982.1|(pre=K,post=D) 87 -14 5.4227086E-5 2.1953294 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1580 experiment=2 -1 HCD 533.26227 1 -43.25022 3 LIIQLEQGDEPWR gi|528908802|ref|XP_005199340.1|(pre=K,post=E);gi|528908804|ref|XP_005199341.1|(pre=K,post=E);gi|528908806|ref|XP_005199342.1|(pre=K,post=E);gi|528908808|ref|XP_005199343.1|(pre=K,post=E);gi|528908810|ref|XP_005199344.1|(pre=K,post=E);gi|528908812|ref|XP_609847.5|(pre=K,post=E);gi|528959647|ref|XP_005210511.1|(pre=K,post=E);gi|528959649|ref|XP_005210512.1|(pre=K,post=E);gi|528959651|ref|XP_005210513.1|(pre=K,post=E);gi|528959653|ref|XP_005210514.1|(pre=K,post=E);gi|528959655|ref|XP_005210515.1|(pre=K,post=E);gi|528959657|ref|XP_002689899.2|(pre=K,post=E) 38 -31 5.964108E-5 2.387492 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1191 experiment=3 -1 HCD 400.68393 0 -14.166251 2 EVMEHR gi|528944676|ref|XP_005204734.1|(pre=K,post=L);gi|528944678|ref|XP_005204735.1|(pre=K,post=L);gi|219804516|ref|NP_001137332.1|(pre=K,post=L) 27 -14 6.842939E-5 2.6465752 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1209 experiment=5 -1 HCD 404.1922 0 -21.819786 3 QLAQKYNCDK gi|528954392|ref|XP_005208526.1|(pre=R,post=M);gi|115496708|ref|NP_001069831.1|(pre=R,post=M) 51 -14 7.684107E-5 3.037758 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1202 experiment=3 -1 HCD 423.6786 0 -15.198104 2 DLGEEHF gi|30794280|ref|NP_851335.1|(pre=K,post=K) 36 -12 7.7868164E-5 3.0307846 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1215 experiment=3 -1 HCD 613.78107 1 -47.61758 2 DLPFLSNEYK gi|528944676|ref|XP_005204734.1|(pre=K,post=E) 53 -26 8.023354E-5 3.1718724 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1198 experiment=3 -1 HCD 613.27563 1 -36.601665 2 QLQEELAEHQ gi|528944676|ref|XP_005204734.1|(pre=K,post=V);gi|528944678|ref|XP_005204735.1|(pre=K,post=V);gi|219804516|ref|NP_001137332.1|(pre=K,post=V) 47 -29 8.59888E-5 3.3993952 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1219 experiment=3 -1 HCD 509.25696 0 -0.53933096 2 DAENTVRGR gi|528944676|ref|XP_005204734.1|(pre=R,post=L) 42 -23 8.931347E-5 3.5139492 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1192 experiment=3 -1 HCD 433.18747 0 -46.987206 2 LSETEMR gi|528928354|ref|XP_005193233.1|(pre=Q,post=P) 34 -20 9.6144715E-5 3.7421446 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1209 experiment=4 -1 HCD 481.199 0 -36.782173 2 HAAEEEIY gi|528968104|ref|XP_005212567.1|(pre=R,post=T);gi|528968106|ref|XP_005212568.1|(pre=R,post=T);gi|528968108|ref|XP_005212569.1|(pre=R,post=T) 46 -31 1.1874728E-4 4.648006 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1215 experiment=2 -1 HCD 605.81055 1 -36.649742 2 MPPLIPAEVDK gi|528944676|ref|XP_005204734.1|(pre=R,post=I);gi|528944678|ref|XP_005204735.1|(pre=R,post=I);gi|219804516|ref|NP_001137332.1|(pre=R,post=I) 45 -26 1.2084616E-4 4.7984385 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1215 experiment=2 -1 HCD 605.81055 0 20.855597 2 QLAQKYNCDK gi|528954392|ref|XP_005208526.1|(pre=R,post=M);gi|115496708|ref|NP_001069831.1|(pre=R,post=M) 45 -26 1.2084616E-4 4.7774115 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1196 experiment=2 -1 HCD 409.18747 1 -15.97708 2 YYKVDE gi|528968221|ref|XP_005212615.1|(pre=K,post=N);gi|27807503|ref|NP_777203.1|(pre=K,post=N) 43 -16 1.217629E-4 4.709302 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1214 experiment=2 -1 HCD 510.20837 0 28.05353 2 MMSASSYNE gi|528928354|ref|XP_005193233.1|(pre=R,post=D) 67 -20 1.2431844E-4 4.891185 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1217 experiment=5 -1 HCD 476.69785 1 -36.653725 2 ARGCSEELS gi|358418103|ref|XP_600387.4|(pre=R,post=K);gi|528923273|ref|XP_005196452.1|(pre=R,post=K);gi|297488451|ref|XP_002696970.1|(pre=R,post=K);gi|529000951|ref|XP_005222651.1|(pre=R,post=K) 35 -25 1.4944564E-4 5.8797894 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1238 experiment=2 -1 HCD 455.65408 1 42.005333 3 LIRRQRLRPR gi|139948503|ref|NP_001077142.1|(pre=K,post=E) 25 -35 1.6960995E-4 6.70519 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1201 experiment=2 -1 HCD 440.18204 1 -28.454306 2 CDDQNKR gi|528944676|ref|XP_005204734.1|(pre=E,post=S) 44 -21 1.7229663E-4 6.706129 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1210 experiment=3 -1 HCD 461.71622 0 30.008469 2 EACFAVEGP gi|30794280|ref|NP_851335.1|(pre=K,post=K) 59 -18 1.7894078E-4 7.040246 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1218 experiment=3 -1 HCD 471.21652 1 -38.450603 3 SKEVSNLEFSDR gi|528944676|ref|XP_005204734.1|(pre=G,post=K) 57 -27 1.8095516E-4 7.215225 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1221 experiment=3 -1 HCD 684.79614 0 -44.82985 2 EGQMVEEKYQK gi|528944676|ref|XP_005204734.1|(pre=E,post=A);gi|528944678|ref|XP_005204735.1|(pre=E,post=A);gi|219804516|ref|NP_001137332.1|(pre=E,post=A) 85 -34 2.1989181E-4 8.731244 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1199 experiment=2 -1 HCD 608.2569 0 -33.012207 3 ELNPEEGQMVEEKYQ gi|528944676|ref|XP_005204734.1|(pre=K,post=K);gi|528944678|ref|XP_005204735.1|(pre=K,post=K);gi|219804516|ref|NP_001137332.1|(pre=K,post=K) 76 -38 3.0840118E-4 12.439979 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1201 experiment=4 -1 HCD 792.833 0 -44.263622 2 NQDALTFFNSNQVS gi|528944676|ref|XP_005204734.1|(pre=R,post=E) 70 -57 3.212409E-4 12.909707 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1214 experiment=4 -1 HCD 545.8876 1 -14.505296 3 NCNGSAACGLGYDFSR gi|358414198|ref|XP_002700672.2|(pre=M,post=C);gi|528966552|ref|XP_005211956.1|(pre=M,post=C);gi|528966554|ref|XP_005211957.1|(pre=M,post=C);gi|297479727|ref|XP_002690982.1|(pre=M,post=C) 120 -12 3.4639085E-4 14.023288 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1214 experiment=4 -1 HCD 545.8876 1 -31.845514 3 QSFGLSQEEYGFDGA gi|28849955|ref|NP_788795.1|(pre=K,post=P);gi|119924469|ref|XP_001252524.1|(pre=K,post=P) 120 -12 3.4639085E-4 13.972368 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1225 experiment=2 -1 HCD 550.7279 0 -4.211383 2 AEDEPEWPQ gi|358418103|ref|XP_600387.4|(pre=R,post=P);gi|528923273|ref|XP_005196452.1|(pre=R,post=P);gi|297488451|ref|XP_002696970.1|(pre=R,post=P);gi|529000951|ref|XP_005222651.1|(pre=R,post=P) 46 -39 3.8618056E-4 15.193888 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1218 experiment=5 -1 HCD 587.7718 1 -4.5191565 2 KQEESAEAGAPG gi|528921178|ref|XP_592304.7|(pre=R,post=G);gi|528921180|ref|XP_005195747.1|(pre=R,post=G);gi|528995523|ref|XP_002695913.2|(pre=R,post=G) 52 -31 4.938522E-4 19.69137 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1201 experiment=3 -1 HCD 512.217 0 -47.184654 2 PFVCLECGR gi|528908802|ref|XP_005199340.1|(pre=R,post=G);gi|528908804|ref|XP_005199341.1|(pre=R,post=G);gi|528908806|ref|XP_005199342.1|(pre=R,post=G);gi|528908808|ref|XP_005199343.1|(pre=R,post=G);gi|528908810|ref|XP_005199344.1|(pre=R,post=G);gi|528908812|ref|XP_609847.5|(pre=R,post=G);gi|528959647|ref|XP_005210511.1|(pre=R,post=G);gi|528959649|ref|XP_005210512.1|(pre=R,post=G);gi|528959651|ref|XP_005210513.1|(pre=R,post=G);gi|528959653|ref|XP_005210514.1|(pre=R,post=G);gi|528959655|ref|XP_005210515.1|(pre=R,post=G);gi|528959657|ref|XP_002689899.2|(pre=R,post=G) 44 -26 5.290015E-4 20.813036 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1208 experiment=3 -1 HCD 490.20404 0 -36.60451 2 ENLEQAFE gi|528944676|ref|XP_005204734.1|(pre=R,post=V);gi|528944678|ref|XP_005204735.1|(pre=R,post=V);gi|219804516|ref|NP_001137332.1|(pre=R,post=V) 76 -34 5.55107E-4 21.727999 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1204 experiment=4 -1 HCD 464.18753 1 -3.946628 2 HYCGKCCL gi|528968221|ref|XP_005212615.1|(pre=R,post=T);gi|27807503|ref|NP_777203.1|(pre=R,post=T) 32 -44 6.305883E-4 24.682487 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1200 experiment=2 -1 HCD 563.21234 0 15.388735 2 EEDASSCQEQ gi|528944676|ref|XP_005204734.1|(pre=R,post=L);gi|528944678|ref|XP_005204735.1|(pre=R,post=L);gi|219804516|ref|NP_001137332.1|(pre=R,post=L) 79 -44 9.1590727E-4 36.20856 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1183 experiment=2 -1 HCD 416.16492 0 8.50641 2 DENYYQ gi|528944676|ref|XP_005204734.1|(pre=R,post=L);gi|528944678|ref|XP_005204735.1|(pre=R,post=L);gi|219804516|ref|NP_001137332.1|(pre=R,post=L) 52 -39 9.4161194E-4 36.417786 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1228 experiment=2 -1 HCD 500.6953 1 -1.0961035 2 MCNFHYQG gi|528968104|ref|XP_005212567.1|(pre=K,post=F);gi|528968106|ref|XP_005212568.1|(pre=K,post=F);gi|528968108|ref|XP_005212569.1|(pre=K,post=F);gi|115497338|ref|NP_001069884.1|(pre=K,post=F) 54 -36 0.0011096081 43.43228 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1236 experiment=3 -1 HCD 673.7862 0 -47.91735 2 EDLVPWIEDCK gi|528944676|ref|XP_005204734.1|(pre=V,post=A);gi|528944678|ref|XP_005204735.1|(pre=V,post=A);gi|219804516|ref|NP_001137332.1|(pre=V,post=A) 56 -52 0.0015187213 60.30387 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1199 experiment=3 -1 HCD 495.18527 0 -25.883345 2 YNCDKMIC gi|528954392|ref|XP_005208526.1|(pre=K,post=R);gi|115496708|ref|NP_001069831.1|(pre=K,post=R) 40 -41 0.0025026577 97.95903 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1199 experiment=3 -1 HCD 495.18527 1 -8.696244 2 CGDCKFNVC gi|358418103|ref|XP_600387.4|(pre=R,post=K);gi|528923273|ref|XP_005196452.1|(pre=R,post=K);gi|297488451|ref|XP_002696970.1|(pre=R,post=K);gi|529000951|ref|XP_005222651.1|(pre=R,post=K) 40 -41 0.0025026577 98.46456 1.0 1.0 +201208-378803.mzML sample=1 period=1 cycle=1188 experiment=2 -1 HCD 489.16623 0 -47.910866 3 CTNFSSCWSDGKM gi|528944676|ref|XP_005204734.1|(pre=K,post=F);gi|528944678|ref|XP_005204735.1|(pre=K,post=F);gi|219804516|ref|NP_001137332.1|(pre=K,post=F) 64 -61 0.0058590886 234.54517 1.0 1.0 diff -r 058a2ab1d462 -r b4ccaf21855d tool_dependencies.xml --- a/tool_dependencies.xml Wed Dec 07 16:43:17 2016 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ - - - - - -