# HG changeset patch
# User galaxyp
# Date 1505332661 14400
# Node ID ce4882b95b739dc5903c052e1360807241777897
# Parent  58f9cf0de6d4884483c387e3229bc3abcca38a1e
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msgfplus commit a030bdf85b5d74b7c1a16926322e47154b120fea

diff -r 58f9cf0de6d4 -r ce4882b95b73 msgfplus.xml
--- a/msgfplus.xml	Wed Aug 23 05:47:29 2017 -0400
+++ b/msgfplus.xml	Wed Sep 13 15:57:41 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="msgfplus" name="MS-GF+" version="0.2">
+<tool id="msgfplus" name="MS-GF+" version="0.3">
     <description>
         Identifies peptides in tandem mass spectra using the MS-GF+ search engine.
     </description>
@@ -20,7 +20,7 @@
         ln -s '$msgf_input.d' '${db_name}' &&
         #else if $msgf_input.intype_selector == "fractions"
         #set $db_name = $msgf_input.db_spectra.reverse.element_identifier.replace(".fasta", "") + ".fasta"
-        #set $input_name = $msgf_input.db_spectra.forward.element_identifier.replace(".mzML", "") + ".mzML"
+        #set $input_name = $msgf_input.db_spectra.name.replace(".mzML", "") + ".mzML"
         ln -s '$msgf_input.db_spectra.forward' '${input_name}' &&
         ln -s '$msgf_input.db_spectra.reverse' '${db_name}' &&
         #end if