Mercurial > repos > galaxyp > msi_ion_images
comparison msi_ion_images.xml @ 3:616b98c235fb draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_ion_images commit 06c2b45d8644b1d7fc01622a5c59dcbf8886d0f1
| author | galaxyp |
|---|---|
| date | Mon, 23 Apr 2018 17:18:53 -0400 |
| parents | b2ad54eabcca |
| children | 9746576123c9 |
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| 2:b2ad54eabcca | 3:616b98c235fb |
|---|---|
| 1 <tool id="mass_spectrometry_imaging_ion_images" name="MSI ion images" version="1.7.0.2"> | 1 <tool id="mass_spectrometry_imaging_ion_images" name="MSI ion images" version="1.7.0.3"> |
| 2 <description> | 2 <description> |
| 3 mass spectrometry imaging heatmaps | 3 mass spectrometry imaging heatmaps |
| 4 </description> | 4 </description> |
| 5 <requirements> | 5 <requirements> |
| 6 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement> | 6 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement> |
| 230 <option value="adaptive">adaptive</option> | 230 <option value="adaptive">adaptive</option> |
| 231 </param> | 231 </param> |
| 232 <param name="plusminus_dalton" value="0.25" type="float" label="Mass range" help="plusminus mass window in Dalton"/> | 232 <param name="plusminus_dalton" value="0.25" type="float" label="Mass range" help="plusminus mass window in Dalton"/> |
| 233 </inputs> | 233 </inputs> |
| 234 <outputs> | 234 <outputs> |
| 235 <data format="pdf" name="plots" from_work_dir="heatmaps.pdf" label = "${tool.name} on $infile.display_name"/> | 235 <data format="pdf" name="plots" from_work_dir="heatmaps.pdf" label = "${tool.name} ${on_string}"/> |
| 236 <data format="tabular" name="pixel_count" label="Number of pixels per mz with intensity"/> | 236 <data format="tabular" name="pixel_count" label="Number of peaks (intensity > 0) per mz"/> |
| 237 </outputs> | 237 </outputs> |
| 238 <tests> | 238 <tests> |
| 239 <test> | 239 <test> |
| 240 <param name="infile" value="" ftype="imzml"> | 240 <param name="infile" value="" ftype="imzml"> |
| 241 <composite_data value="Example_Continuous.imzML"/> | 241 <composite_data value="Example_Continuous.imzML"/> |