# HG changeset patch # User galaxyp # Date 1529967869 14400 # Node ID c43a7821c03061c8c8924b4fb17553aec38feb31 # Parent 30d0aabb1b46dc75a1f3c627134a2e6ea5befd3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_qualitycontrol commit a0cadd9fe40da0094dc87bbf5e06a323973a0b42 diff -r 30d0aabb1b46 -r c43a7821c030 msi_qualitycontrol.xml --- a/msi_qualitycontrol.xml Thu Jun 21 16:46:09 2018 -0400 +++ b/msi_qualitycontrol.xml Mon Jun 25 19:04:29 2018 -0400 @@ -758,8 +758,8 @@ plot(msidata[minmasspixel:maxmasspixel,], pixel=1:ncol(msidata),main="Average spectrum per sample", pixel.groups=msidata\$combined_sample, key=key_zoomed, col=hue_pal()(number_combined),superpose=TRUE) abline(v=c(inputcalibrantmasses[mass] -plusminusvalues[count], inputcalibrantmasses[mass] ,inputcalibrantmasses[mass] +plusminusvalues[count]), col="black", lty=c(3,1,3)) + } count=count+1 - } } ######### 17) ppm difference input calibrant m/z and m/z with max intensity in given m/z range#########