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comparison msi_spectra_plots.xml @ 1:7caaf84a8a51 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msi_spectra_plots commit 06c2b45d8644b1d7fc01622a5c59dcbf8886d0f1
author galaxyp
date Mon, 23 Apr 2018 17:20:15 -0400
parents c93ae3463b30
children ea4f1c516368
comparison
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0:c93ae3463b30 1:7caaf84a8a51
1 <tool id="mass_spectrometry_imaging_mzplots" name="MSI massspectra" version="1.7.0"> 1 <tool id="mass_spectrometry_imaging_mzplots" name="MSI plot spectra" version="1.7.0.1">
2 <description> 2 <description>
3 mass spectrometry imaging mass spectra plots 3 mass spectrometry imaging mass spectra plots
4 </description> 4 </description>
5 <requirements> 5 <requirements>
6 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement> 6 <requirement type="package" version="1.7.0">bioconductor-cardinal</requirement>
263 <param name="xlimmax" type="integer" value="" label="upper boundary in Dalton for plotting window" help="maximum mz for zoomed in window"/> 263 <param name="xlimmax" type="integer" value="" label="upper boundary in Dalton for plotting window" help="maximum mz for zoomed in window"/>
264 </repeat> 264 </repeat>
265 </repeat> 265 </repeat>
266 </inputs> 266 </inputs>
267 <outputs> 267 <outputs>
268 <data format="pdf" name="plots" from_work_dir="mzplots.pdf" label = "${tool.name} on $infile.display_name"/> 268 <data format="pdf" name="plots" from_work_dir="mzplots.pdf" label = "${tool.name} ${on_string}"/>
269 <data format="tabular" name="tabularmatrix" label="${tool.name} on $infile.display_name" /> 269 <data format="tabular" name="tabularmatrix" label="Mass spectrum ${on_string}" />
270 </outputs> 270 </outputs>
271 <tests> 271 <tests>
272 <test> 272 <test>
273 <param name="infile" value="" ftype="imzml"> 273 <param name="infile" value="" ftype="imzml">
274 <composite_data value="Example_Continuous.imzML"/> 274 <composite_data value="Example_Continuous.imzML"/>