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"planemo upload commit 499df83651e020e9106d70ec658edf86355f49d9"
author galaxyp
date Wed, 21 Oct 2020 16:39:25 +0000
parents b0de3731dca5
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4 Description 4 Description
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7 In order to enable multi-omics data analysis of microbiome data, the Galaxy-P team has developed a tool – MT2MQ – which processes metatranscriptomics gene families output from ASaiM workflow and converts it to Gene Ontology (GO) or EC terms. The processed metatranscriptomics output can be subsequently used as an input for comparative statistical analysis via [metaQuantome](https://www.mcponline.org/content/18/8_suppl_1/S82) software suite. 7 In order to enable multi-omics data analysis of microbiome data, the Galaxy-P team has developed a tool – MT2MQ – which processes metatranscriptomics gene families output from [ASaiM](https://training.galaxyproject.org/training-material/topics/metagenomics/tutorials/metatranscriptomics/tutorial.html) workflow and converts it to [Gene Ontology](http://geneontology.org/docs/ontology-documentation/) (GO) or EC terms. The processed metatranscriptomics output can be subsequently used as an input for comparative statistical analysis via [metaQuantome](https://www.mcponline.org/content/18/8_suppl_1/S82) software suite.
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9 Authors 9 Authors
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12 Authors and contributors: 12 Authors and contributors:
44 - Click the **Operations on multiple datasets** check box at the top of the history panel. 44 - Click the **Operations on multiple datasets** check box at the top of the history panel.
45 - Select the files mentioned above. 45 - Select the files mentioned above.
46 - Click on ** For all selected** drop down menu and select **Build Dataset list**. 46 - Click on ** For all selected** drop down menu and select **Build Dataset list**.
47 - Once the collection is created, rename the dataset collection as `Input collection`. 47 - Once the collection is created, rename the dataset collection as `Input collection`.
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49 2. Download the map_go_uniref50.txt file from zenodo. 49 2. Download the map_go_uniref50.txt file from [zenodo](https://doi.org/10.5281/zenodo.4115871).
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51 3. Run the **Regroup a HUMAnN2 generated table by features**(Galaxy Version 0.11.1.0) tool is regrouping table features (abundances or coverage) given a table of feature values and a mapping of groups to component features. It produces a new table with group values in place of feature values. 51 3. Run the **Regroup a HUMAnN2 generated table by features**(Galaxy Version 0.11.1.0) tool is regrouping table features (abundances or coverage) given a table of feature values and a mapping of groups to component features. It produces a new table with group values in place of feature values.
52 - [**Regroup a HUMAnN2 generated table by features**](https://toolshed.g2.bx.psu.edu/repository?repository_id=85391b8d5d7ad39d) with the following parameters: 52 - [**Regroup a HUMAnN2 generated table by features**](https://toolshed.g2.bx.psu.edu/repository?repository_id=85391b8d5d7ad39d) with the following parameters:
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54 - *"Gene/pathway table"*: `Input collection` 54 - *"Gene/pathway table"*: `Input collection`