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comparison test-data/201208-378803-cm.pep.xml @ 2:8240d0714a97 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 1e51bed3a1c10c67ef0404216608e9333db04c64
author galaxyp
date Fri, 06 Oct 2017 15:00:29 -0400
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1:1881935e5351 2:8240d0714a97
1 <?xml version="1.0" encoding="UTF-8"?>
2 <msms_pipeline_analysis date="2014-09-19T11:13:55" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd" summary_xml="C:\idpicker\branches\IDPicker-3\TestData\201208-378803.pep.xml">
3 <msms_run_summary base_name="C:\idpicker\branches\IDPicker-3\TestData\201208-378803" msManufacturer="unknown" msModel="unknown" raw_data_type="raw" raw_data=".mzML">
4 <sample_enzyme name="Trypsin/P">
5 <specificity cut="KR" no_cut="-" sense="C"/>
6 </sample_enzyme>
7 <search_summary base_name="C:\idpicker\branches\IDPicker-3\TestData\201208-378803" search_engine="Comet" search_engine_version="2014.02 rev. 0" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1">
8 <search_database local_path="cow.protein.PRG2012-subset.fasta" type="AA"/>
9 <enzymatic_search_constraint enzyme="Trypsin/P" max_num_internal_cleavages="2" min_number_termini="1"/>
10 <aminoacid_modification aminoacid="M" massdiff="15.994900" mass="147.035385" variable="Y" symbol="*"/>
11 <aminoacid_modification aminoacid="Q" massdiff="-17.026000" mass="111.032578" variable="Y" symbol="#"/>
12 <aminoacid_modification aminoacid="Q" massdiff="0.984016" mass="129.042594" variable="Y" symbol="@"/>
13 <aminoacid_modification aminoacid="N" massdiff="0.984016" mass="115.026943" variable="Y" symbol="@"/>
14 <aminoacid_modification aminoacid="C" massdiff="58.005480" mass="161.014665" variable="N"/>
15 <parameter name="# comet_version " value="2014.02"/>
16 <parameter name="activation_method" value="ALL"/>
17 <parameter name="add_A_alanine" value="0.000000"/>
18 <parameter name="add_B_user_amino_acid" value="0.000000"/>
19 <parameter name="add_C_cysteine" value="58.005480"/>
20 <parameter name="add_Cterm_peptide" value="0.000000"/>
21 <parameter name="add_Cterm_protein" value="0.000000"/>
22 <parameter name="add_D_aspartic_acid" value="0.000000"/>
23 <parameter name="add_E_glutamic_acid" value="0.000000"/>
24 <parameter name="add_F_phenylalanine" value="0.000000"/>
25 <parameter name="add_G_glycine" value="0.000000"/>
26 <parameter name="add_H_histidine" value="0.000000"/>
27 <parameter name="add_I_isoleucine" value="0.000000"/>
28 <parameter name="add_J_user_amino_acid" value="0.000000"/>
29 <parameter name="add_K_lysine" value="0.000000"/>
30 <parameter name="add_L_leucine" value="0.000000"/>
31 <parameter name="add_M_methionine" value="0.000000"/>
32 <parameter name="add_N_asparagine" value="0.000000"/>
33 <parameter name="add_Nterm_peptide" value="0.000000"/>
34 <parameter name="add_Nterm_protein" value="0.000000"/>
35 <parameter name="add_O_ornithine" value="0.000000"/>
36 <parameter name="add_P_proline" value="0.000000"/>
37 <parameter name="add_Q_glutamine" value="0.000000"/>
38 <parameter name="add_R_arginine" value="0.000000"/>
39 <parameter name="add_S_serine" value="0.000000"/>
40 <parameter name="add_T_threonine" value="0.000000"/>
41 <parameter name="add_U_user_amino_acid" value="0.000000"/>
42 <parameter name="add_V_valine" value="0.000000"/>
43 <parameter name="add_W_tryptophan" value="0.000000"/>
44 <parameter name="add_X_user_amino_acid" value="0.000000"/>
45 <parameter name="add_Y_tyrosine" value="0.000000"/>
46 <parameter name="add_Z_user_amino_acid" value="0.000000"/>
47 <parameter name="allowed_missed_cleavage" value="2"/>
48 <parameter name="clear_mz_range" value="0.000000 0.000000"/>
49 <parameter name="clip_nterm_methionine" value="1"/>
50 <parameter name="database_name" value="cow.protein.PRG2012-subset.fasta"/>
51 <parameter name="decoy_prefix" value="XXX_"/>
52 <parameter name="decoy_search" value="1"/>
53 <parameter name="digest_mass_range" value="600.000000 5000.000000"/>
54 <parameter name="fragment_bin_offset" value="0.020000"/>
55 <parameter name="fragment_bin_tol" value="0.020000"/>
56 <parameter name="isotope_error" value="1"/>
57 <parameter name="mass_type_fragment" value="1"/>
58 <parameter name="mass_type_parent" value="1"/>
59 <parameter name="max_fragment_charge" value="3"/>
60 <parameter name="max_precursor_charge" value="6"/>
61 <parameter name="max_variable_mods_in_peptide" value="5"/>
62 <parameter name="minimum_intensity" value="0"/>
63 <parameter name="minimum_peaks" value="10"/>
64 <parameter name="ms_level" value="2"/>
65 <parameter name="nucleotide_reading_frame" value="0"/>
66 <parameter name="num_enzyme_termini" value="1"/>
67 <parameter name="num_output_lines" value="5"/>
68 <parameter name="num_results" value="50"/>
69 <parameter name="num_threads" value="0"/>
70 <parameter name="output_outfiles" value="0"/>
71 <parameter name="output_pepxmlfile" value="1"/>
72 <parameter name="output_percolatorfile" value="0"/>
73 <parameter name="output_sqtfile" value="0"/>
74 <parameter name="output_sqtstream" value="0"/>
75 <parameter name="output_suffix" value="-cm"/>
76 <parameter name="output_txtfile" value="0"/>
77 <parameter name="override_charge" value="0"/>
78 <parameter name="peptide_mass_tolerance" value="20.000000"/>
79 <parameter name="peptide_mass_units" value="2"/>
80 <parameter name="precursor_charge" value="1 5"/>
81 <parameter name="print_expect_score" value="1"/>
82 <parameter name="remove_precursor_peak" value="0"/>
83 <parameter name="remove_precursor_tolerance" value="1.500000"/>
84 <parameter name="sample_enzyme_number" value="2"/>
85 <parameter name="scan_range" value="0 0"/>
86 <parameter name="search_enzyme_number" value="2"/>
87 <parameter name="show_fragment_ions" value="0"/>
88 <parameter name="skip_researching" value="1"/>
89 <parameter name="spectrum_batch_size" value="0"/>
90 <parameter name="theoretical_fragment_ions" value="0"/>
91 <parameter name="use_A_ions" value="0"/>
92 <parameter name="use_B_ions" value="1"/>
93 <parameter name="use_C_ions" value="0"/>
94 <parameter name="use_NL_ions" value="1"/>
95 <parameter name="use_X_ions" value="0"/>
96 <parameter name="use_Y_ions" value="1"/>
97 <parameter name="use_Z_ions" value="0"/>
98 <parameter name="use_sparse_matrix" value="0"/>
99 <parameter name="variable_mod01" value="15.994900 M 0 3 -1 0"/>
100 <parameter name="variable_mod02" value="-17.026000 Q 0 1 0 0"/>
101 <parameter name="variable_mod03" value="0.984016 QN 0 3 -1 0"/>
102 <parameter name="variable_mod04" value="0.000000 X 0 3 -1 0"/>
103 <parameter name="variable_mod05" value="0.000000 X 0 3 -1 0"/>
104 <parameter name="variable_mod06" value="0.000000 X 0 3 -1 0"/>
105 <parameter name="variable_mod07" value="0.000000 X 0 3 -1 0"/>
106 <parameter name="variable_mod08" value="0.000000 X 0 3 -1 0"/>
107 <parameter name="variable_mod09" value="0.000000 X 0 3 -1 0"/>
108 </search_summary>
109 <spectrum_query spectrum="201208-378803.00001.00001.3" spectrumNativeID="sample=1 period=1 cycle=1181 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="1517.212359" assumed_charge="3" index="1" retention_time_sec="614.4">
110 <search_result>
111 </search_result>
112 </spectrum_query>
113 <spectrum_query spectrum="201208-378803.00001.00001.2" spectrumNativeID="sample=1 period=1 cycle=1181 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="1011.474906" assumed_charge="2" index="2" retention_time_sec="614.4">
114 <search_result>
115 <search_hit hit_rank="1" peptide="AEPESDLPR" peptide_prev_aa="H" peptide_next_aa="N" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1012.482539" massdiff="-1.007633" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622">
116 <search_score name="xcorr" value="0.474"/>
117 <search_score name="deltacn" value="0.001"/>
118 <search_score name="deltacnstar" value="0.000"/>
119 <search_score name="spscore" value="0.0"/>
120 <search_score name="sprank" value="7"/>
121 <search_score name="expect" value="9.70E+000"/>
122 </search_hit>
123 <search_hit hit_rank="2" peptide="ASQGMTPFR" peptide_prev_aa="G" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1009.465100" massdiff="2.009806" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622">
124 <modification_info modified_peptide="ASQGM[147]TPFR">
125 <mod_aminoacid_mass position="5" mass="147.035385"/>
126 </modification_info>
127 <search_score name="xcorr" value="0.473"/>
128 <search_score name="deltacn" value="0.043"/>
129 <search_score name="deltacnstar" value="0.000"/>
130 <search_score name="spscore" value="0.0"/>
131 <search_score name="sprank" value="7"/>
132 <search_score name="expect" value="9.74E+000"/>
133 </search_hit>
134 <search_hit hit_rank="3" peptide="NESLDLYR" peptide_prev_aa="L" peptide_next_aa="L" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1009.471640" massdiff="2.003266" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622">
135 <modification_info modified_peptide="N[115]ESLDLYR">
136 <mod_aminoacid_mass position="1" mass="115.026943"/>
137 </modification_info>
138 <search_score name="xcorr" value="0.453"/>
139 <search_score name="deltacn" value="0.208"/>
140 <search_score name="deltacnstar" value="0.000"/>
141 <search_score name="spscore" value="2.8"/>
142 <search_score name="sprank" value="3"/>
143 <search_score name="expect" value="1.20E+001"/>
144 </search_hit>
145 <search_hit hit_rank="4" peptide="LMQQSSVSK" peptide_prev_aa="I" peptide_next_aa="F" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1008.479763" massdiff="2.995144" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622">
146 <modification_info modified_peptide="LMQ[129]Q[129]SSVSK">
147 <mod_aminoacid_mass position="3" mass="129.042594"/>
148 <mod_aminoacid_mass position="4" mass="129.042594"/>
149 </modification_info>
150 <search_score name="xcorr" value="0.359"/>
151 <search_score name="deltacn" value="0.019"/>
152 <search_score name="deltacnstar" value="0.000"/>
153 <search_score name="spscore" value="3.9"/>
154 <search_score name="sprank" value="2"/>
155 <search_score name="expect" value="3.16E+001"/>
156 </search_hit>
157 <search_hit hit_rank="5" peptide="KAMGSNMEK" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1010.452487" massdiff="1.022420" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="622">
158 <modification_info modified_peptide="KAM[147]GSNMEK">
159 <mod_aminoacid_mass position="3" mass="147.035385"/>
160 </modification_info>
161 <search_score name="xcorr" value="0.352"/>
162 <search_score name="deltacn" value="1.000"/>
163 <search_score name="deltacnstar" value="0.000"/>
164 <search_score name="spscore" value="0.0"/>
165 <search_score name="sprank" value="7"/>
166 <search_score name="expect" value="3.39E+001"/>
167 </search_hit>
168 </search_result>
169 </spectrum_query>
170 <spectrum_query spectrum="201208-378803.00002.00002.2" spectrumNativeID="sample=1 period=1 cycle=1183 experiment=2" start_scan="2" end_scan="2" precursor_neutral_mass="830.315297" assumed_charge="2" index="3" retention_time_sec="617.5">
171 <search_result>
172 <search_hit hit_rank="1" peptide="DGCHWR" peptide_prev_aa="P" peptide_next_aa="G" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="830.312972" massdiff="0.002325" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76">
173 <modification_info modified_peptide="DGCHWR">
174 <mod_aminoacid_mass position="3" mass="161.014665"/>
175 </modification_info>
176 <search_score name="xcorr" value="0.208"/>
177 <search_score name="deltacn" value="0.166"/>
178 <search_score name="deltacnstar" value="0.000"/>
179 <search_score name="spscore" value="0.0"/>
180 <search_score name="sprank" value="1"/>
181 <search_score name="expect" value="1.20E+001"/>
182 </search_hit>
183 <search_hit hit_rank="2" peptide="YYNEDQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="830.308263" massdiff="0.007034" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76">
184 <search_score name="xcorr" value="0.173"/>
185 <search_score name="deltacn" value="0.133"/>
186 <search_score name="deltacnstar" value="0.000"/>
187 <search_score name="spscore" value="0.0"/>
188 <search_score name="sprank" value="1"/>
189 <search_score name="expect" value="2.36E+001"/>
190 </search_hit>
191 <search_hit hit_rank="3" peptide="TMEEMR" peptide_prev_aa="F" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="827.315310" massdiff="2.999987" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76">
192 <modification_info modified_peptide="TM[147]EEM[147]R">
193 <mod_aminoacid_mass position="2" mass="147.035385"/>
194 <mod_aminoacid_mass position="5" mass="147.035385"/>
195 </modification_info>
196 <search_score name="xcorr" value="0.150"/>
197 <search_score name="deltacn" value="0.081"/>
198 <search_score name="deltacnstar" value="0.000"/>
199 <search_score name="spscore" value="0.0"/>
200 <search_score name="sprank" value="1"/>
201 <search_score name="expect" value="3.72E+001"/>
202 </search_hit>
203 <search_hit hit_rank="4" peptide="WHCGDR" peptide_prev_aa="P" peptide_next_aa="G" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="830.312972" massdiff="0.002325" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76">
204 <modification_info modified_peptide="WHCGDR">
205 <mod_aminoacid_mass position="3" mass="161.014665"/>
206 </modification_info>
207 <search_score name="xcorr" value="0.138"/>
208 <search_score name="deltacn" value="0.035"/>
209 <search_score name="deltacnstar" value="0.000"/>
210 <search_score name="spscore" value="0.0"/>
211 <search_score name="sprank" value="1"/>
212 <search_score name="expect" value="4.73E+001"/>
213 </search_hit>
214 <search_hit hit_rank="5" peptide="MEEMTR" peptide_prev_aa="F" peptide_next_aa="K" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="827.315310" massdiff="2.999987" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76">
215 <modification_info modified_peptide="M[147]EEM[147]TR">
216 <mod_aminoacid_mass position="1" mass="147.035385"/>
217 <mod_aminoacid_mass position="4" mass="147.035385"/>
218 </modification_info>
219 <search_score name="xcorr" value="0.133"/>
220 <search_score name="deltacn" value="1.000"/>
221 <search_score name="deltacnstar" value="0.000"/>
222 <search_score name="spscore" value="0.0"/>
223 <search_score name="sprank" value="1"/>
224 <search_score name="expect" value="5.20E+001"/>
225 </search_hit>
226 </search_result>
227 </spectrum_query>
228 <spectrum_query spectrum="201208-378803.00002.00002.3" spectrumNativeID="sample=1 period=1 cycle=1183 experiment=2" start_scan="2" end_scan="2" precursor_neutral_mass="1245.472945" assumed_charge="3" index="4" retention_time_sec="617.5">
229 <search_result>
230 <search_hit hit_rank="1" peptide="VNSGCMAMENK" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1242.456662" massdiff="3.016283" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="54">
231 <modification_info modified_peptide="VN[115]SGCMAMEN[115]K">
232 <mod_aminoacid_mass position="2" mass="115.026943"/>
233 <mod_aminoacid_mass position="5" mass="161.014665"/>
234 <mod_aminoacid_mass position="10" mass="115.026943"/>
235 </modification_info>
236 <search_score name="xcorr" value="0.288"/>
237 <search_score name="deltacn" value="0.321"/>
238 <search_score name="deltacnstar" value="0.000"/>
239 <search_score name="spscore" value="0.4"/>
240 <search_score name="sprank" value="6"/>
241 <search_score name="expect" value="5.57E+000"/>
242 </search_hit>
243 <search_hit hit_rank="2" peptide="MMTDKEADGSE" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1244.453654" massdiff="1.019291" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="54">
244 <modification_info modified_peptide="M[147]M[147]TDKEADGSE">
245 <mod_aminoacid_mass position="1" mass="147.035385"/>
246 <mod_aminoacid_mass position="2" mass="147.035385"/>
247 </modification_info>
248 <search_score name="xcorr" value="0.196"/>
249 <search_score name="deltacn" value="0.168"/>
250 <search_score name="deltacnstar" value="0.000"/>
251 <search_score name="spscore" value="3.2"/>
252 <search_score name="sprank" value="1"/>
253 <search_score name="expect" value="2.71E+001"/>
254 </search_hit>
255 <search_hit hit_rank="3" peptide="MMSASSYNEDL" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1246.484589" massdiff="-1.011644" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="54">
256 <search_score name="xcorr" value="0.163"/>
257 <search_score name="deltacn" value="0.284"/>
258 <search_score name="deltacnstar" value="0.000"/>
259 <search_score name="spscore" value="0.7"/>
260 <search_score name="sprank" value="2"/>
261 <search_score name="expect" value="4.75E+001"/>
262 </search_hit>
263 <search_hit hit_rank="4" peptide="PYDDDAEYMK" peptide_prev_aa="K" peptide_next_aa="H" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="36" calc_neutral_pep_mass="1245.485970" massdiff="-0.013025" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="54">
264 <search_score name="xcorr" value="0.117"/>
265 <search_score name="deltacn" value="0.002"/>
266 <search_score name="deltacnstar" value="0.000"/>
267 <search_score name="spscore" value="0.4"/>
268 <search_score name="sprank" value="5"/>
269 <search_score name="expect" value="1.05E+002"/>
270 </search_hit>
271 <search_hit hit_rank="5" peptide="CHEVFKQHC" peptide_prev_aa="K" peptide_next_aa="M" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="32" calc_neutral_pep_mass="1246.474695" massdiff="-1.001750" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="54">
272 <modification_info modified_peptide="CHEVFKQ[129]HC">
273 <mod_aminoacid_mass position="1" mass="161.014665"/>
274 <mod_aminoacid_mass position="7" mass="129.042594"/>
275 <mod_aminoacid_mass position="9" mass="161.014665"/>
276 </modification_info>
277 <search_score name="xcorr" value="0.116"/>
278 <search_score name="deltacn" value="1.000"/>
279 <search_score name="deltacnstar" value="0.000"/>
280 <search_score name="spscore" value="0.5"/>
281 <search_score name="sprank" value="4"/>
282 <search_score name="expect" value="1.05E+002"/>
283 </search_hit>
284 </search_result>
285 </spectrum_query>
286 <spectrum_query spectrum="201208-378803.00003.00003.3" spectrumNativeID="sample=1 period=1 cycle=1186 experiment=2" start_scan="3" end_scan="3" precursor_neutral_mass="1575.554503" assumed_charge="3" index="5" retention_time_sec="621.2">
287 <search_result>
288 <search_hit hit_rank="1" peptide="SSSSASQSNHSCTSM" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="56" calc_neutral_pep_mass="1574.546067" massdiff="1.008437" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100">
289 <modification_info modified_peptide="SSSSASQ[129]SNHSCTSM[147]">
290 <mod_aminoacid_mass position="7" mass="129.042594"/>
291 <mod_aminoacid_mass position="12" mass="161.014665"/>
292 <mod_aminoacid_mass position="15" mass="147.035385"/>
293 </modification_info>
294 <search_score name="xcorr" value="0.197"/>
295 <search_score name="deltacn" value="0.185"/>
296 <search_score name="deltacnstar" value="0.003"/>
297 <search_score name="spscore" value="0.0"/>
298 <search_score name="sprank" value="2"/>
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1971 <search_hit hit_rank="5" peptide="SEDNPMNQDLMQSTG" peptide_prev_aa="S" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1683.623982" massdiff="2.991230" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="90">
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1978 <search_score name="deltacn" value="1.000"/>
1979 <search_score name="deltacnstar" value="0.000"/>
1980 <search_score name="spscore" value="1.3"/>
1981 <search_score name="sprank" value="3"/>
1982 <search_score name="expect" value="1.86E+001"/>
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1984 </search_result>
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1986 <spectrum_query spectrum="201208-378803.00022.00022.2" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=3" start_scan="22" end_scan="22" precursor_neutral_mass="898.390940" assumed_charge="2" index="43" retention_time_sec="668.7">
1987 <search_result>
1988 <search_hit hit_rank="1" peptide="TMFTMPR" peptide_prev_aa="G" peptide_next_aa="L" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="898.404080" massdiff="-0.013140" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266">
1989 <modification_info modified_peptide="TMFTM[147]PR">
1990 <mod_aminoacid_mass position="5" mass="147.035385"/>
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1993 <search_score name="deltacn" value="0.178"/>
1994 <search_score name="deltacnstar" value="0.000"/>
1995 <search_score name="spscore" value="16.1"/>
1996 <search_score name="sprank" value="2"/>
1997 <search_score name="expect" value="3.52E+000"/>
1998 </search_hit>
1999 <search_hit hit_rank="2" peptide="EPPGTQDGV" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="899.387242" massdiff="-0.996303" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266">
2000 <modification_info modified_peptide="EPPGTQ[129]DGV">
2001 <mod_aminoacid_mass position="6" mass="129.042594"/>
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2003 <search_score name="xcorr" value="0.374"/>
2004 <search_score name="deltacn" value="0.051"/>
2005 <search_score name="deltacnstar" value="0.000"/>
2006 <search_score name="spscore" value="3.5"/>
2007 <search_score name="sprank" value="8"/>
2008 <search_score name="expect" value="9.75E+000"/>
2009 </search_hit>
2010 <search_hit hit_rank="3" peptide="TMFTMPR" peptide_prev_aa="G" peptide_next_aa="L" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="898.404080" massdiff="-0.013140" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266">
2011 <modification_info modified_peptide="TM[147]FTMPR">
2012 <mod_aminoacid_mass position="2" mass="147.035385"/>
2013 </modification_info>
2014 <search_score name="xcorr" value="0.355"/>
2015 <search_score name="deltacn" value="0.021"/>
2016 <search_score name="deltacnstar" value="0.000"/>
2017 <search_score name="spscore" value="15.4"/>
2018 <search_score name="sprank" value="3"/>
2019 <search_score name="expect" value="1.24E+001"/>
2020 </search_hit>
2021 <search_hit hit_rank="4" peptide="SASEELQH" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="899.398475" massdiff="-1.007536" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266">
2022 <search_score name="xcorr" value="0.348"/>
2023 <search_score name="deltacn" value="0.082"/>
2024 <search_score name="deltacnstar" value="0.000"/>
2025 <search_score name="spscore" value="1.6"/>
2026 <search_score name="sprank" value="10"/>
2027 <search_score name="expect" value="1.36E+001"/>
2028 </search_hit>
2029 <search_hit hit_rank="5" peptide="EPPGTQDGV" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="898.403226" massdiff="-0.012287" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266">
2030 <search_score name="xcorr" value="0.319"/>
2031 <search_score name="deltacn" value="1.000"/>
2032 <search_score name="deltacnstar" value="0.000"/>
2033 <search_score name="spscore" value="3.5"/>
2034 <search_score name="sprank" value="8"/>
2035 <search_score name="expect" value="1.95E+001"/>
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2037 </search_result>
2038 </spectrum_query>
2039 <spectrum_query spectrum="201208-378803.00022.00022.3" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=3" start_scan="22" end_scan="22" precursor_neutral_mass="1347.586409" assumed_charge="3" index="44" retention_time_sec="668.7">
2040 <search_result>
2041 <search_hit hit_rank="1" peptide="WWDHIGNGAFM" peptide_prev_aa="-" peptide_next_aa="K" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1348.565877" massdiff="-0.979468" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="328">
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2045 <search_score name="xcorr" value="0.762"/>
2046 <search_score name="deltacn" value="0.038"/>
2047 <search_score name="deltacnstar" value="0.000"/>
2048 <search_score name="spscore" value="9.7"/>
2049 <search_score name="sprank" value="2"/>
2050 <search_score name="expect" value="4.99E+000"/>
2051 </search_hit>
2052 <search_hit hit_rank="2" peptide="EWRSNLEEQR" peptide_prev_aa="M" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="36" calc_neutral_pep_mass="1347.605509" massdiff="-0.019099" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="328">
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2057 <search_score name="xcorr" value="0.732"/>
2058 <search_score name="deltacn" value="0.022"/>
2059 <search_score name="deltacnstar" value="0.000"/>
2060 <search_score name="spscore" value="8.3"/>
2061 <search_score name="sprank" value="3"/>
2062 <search_score name="expect" value="6.09E+000"/>
2063 </search_hit>
2064 <search_hit hit_rank="3" peptide="SDDQGSEHTVDR" peptide_prev_aa="S" peptide_next_aa="K" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="44" calc_neutral_pep_mass="1344.554201" massdiff="3.032209" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="328">
2065 <search_score name="xcorr" value="0.717"/>
2066 <search_score name="deltacn" value="0.065"/>
2067 <search_score name="deltacnstar" value="0.000"/>
2068 <search_score name="spscore" value="9.9"/>
2069 <search_score name="sprank" value="1"/>
2070 <search_score name="expect" value="6.79E+000"/>
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2072 <search_hit hit_rank="4" peptide="PDDLGRGGNEEST" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528935739|ref|XP_005201142.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1345.574602" massdiff="2.011808" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="328">
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2074 <search_score name="deltacn" value="0.084"/>
2075 <search_score name="deltacnstar" value="0.000"/>
2076 <search_score name="spscore" value="1.4"/>
2077 <search_score name="sprank" value="22"/>
2078 <search_score name="expect" value="9.36E+000"/>
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2080 <search_hit hit_rank="5" peptide="SQLQQEREETT" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1348.610653" massdiff="-1.024244" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="328">
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2085 <search_score name="deltacn" value="1.000"/>
2086 <search_score name="deltacnstar" value="0.000"/>
2087 <search_score name="spscore" value="3.2"/>
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2089 <search_score name="expect" value="1.38E+001"/>
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2104 <search_score name="deltacn" value="0.210"/>
2105 <search_score name="deltacnstar" value="0.153"/>
2106 <search_score name="spscore" value="0.9"/>
2107 <search_score name="sprank" value="4"/>
2108 <search_score name="expect" value="3.61E+001"/>
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2110 <search_hit hit_rank="2" peptide="HEPCQYGLMNNFQ" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1656.607211" massdiff="3.000958" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="64">
2111 <modification_info modified_peptide="HEPCQ[129]YGLM[147]N[115]N[115]FQ">
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2118 <search_score name="xcorr" value="0.246"/>
2119 <search_score name="deltacn" value="0.068"/>
2120 <search_score name="deltacnstar" value="0.000"/>
2121 <search_score name="spscore" value="0.9"/>
2122 <search_score name="sprank" value="4"/>
2123 <search_score name="expect" value="5.33E+001"/>
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2125 <search_hit hit_rank="3" peptide="MVNNGHSFNVEYDD" peptide_prev_aa="R" peptide_next_aa="S" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1657.620217" massdiff="1.987952" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="64">
2126 <modification_info modified_peptide="M[147]VN[115]NGHSFN[115]VEYDD">
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2131 <search_score name="xcorr" value="0.230"/>
2132 <search_score name="deltacn" value="0.205"/>
2133 <search_score name="deltacnstar" value="0.001"/>
2134 <search_score name="spscore" value="1.1"/>
2135 <search_score name="sprank" value="3"/>
2136 <search_score name="expect" value="6.17E+001"/>
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2138 <search_hit hit_rank="4" peptide="MVNNGHSFNVEYDD" peptide_prev_aa="R" peptide_next_aa="S" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1657.620217" massdiff="1.987952" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="64">
2139 <modification_info modified_peptide="M[147]VNN[115]GHSFN[115]VEYDD">
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2145 <search_score name="deltacn" value="0.204"/>
2146 <search_score name="deltacnstar" value="0.000"/>
2147 <search_score name="spscore" value="1.1"/>
2148 <search_score name="sprank" value="3"/>
2149 <search_score name="expect" value="6.19E+001"/>
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2152 <modification_info modified_peptide="TQSDFFGRFMN[115]M[147]C">
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2158 <search_score name="deltacn" value="1.000"/>
2159 <search_score name="deltacnstar" value="0.000"/>
2160 <search_score name="spscore" value="1.2"/>
2161 <search_score name="sprank" value="2"/>
2162 <search_score name="expect" value="9.32E+001"/>
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2166 <spectrum_query spectrum="201208-378803.00023.00023.2" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=4" start_scan="23" end_scan="23" precursor_neutral_mass="1106.405446" assumed_charge="2" index="46" retention_time_sec="670.8">
2167 <search_result>
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2169 <modification_info modified_peptide="N[115]FCYTLCK">
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2171 <mod_aminoacid_mass position="3" mass="161.014665"/>
2172 <mod_aminoacid_mass position="7" mass="161.014665"/>
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2175 <search_score name="deltacn" value="0.041"/>
2176 <search_score name="deltacnstar" value="0.000"/>
2177 <search_score name="spscore" value="4.1"/>
2178 <search_score name="sprank" value="1"/>
2179 <search_score name="expect" value="5.25E+000"/>
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2182 <modification_info modified_peptide="CLTYCFN[115]K">
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2188 <search_score name="deltacn" value="0.018"/>
2189 <search_score name="deltacnstar" value="0.000"/>
2190 <search_score name="spscore" value="4.1"/>
2191 <search_score name="sprank" value="1"/>
2192 <search_score name="expect" value="6.39E+000"/>
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2200 <search_score name="deltacn" value="0.155"/>
2201 <search_score name="deltacnstar" value="0.000"/>
2202 <search_score name="spscore" value="4.1"/>
2203 <search_score name="sprank" value="1"/>
2204 <search_score name="expect" value="6.94E+000"/>
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2206 <search_hit hit_rank="4" peptide="DQNMPNDESG" peptide_prev_aa="L" peptide_next_aa="-" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1105.398217" massdiff="1.007229" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42">
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2208 <search_score name="deltacn" value="0.254"/>
2209 <search_score name="deltacnstar" value="0.000"/>
2210 <search_score name="spscore" value="0.0"/>
2211 <search_score name="sprank" value="3"/>
2212 <search_score name="expect" value="1.39E+001"/>
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2220 <search_score name="xcorr" value="0.149"/>
2221 <search_score name="deltacn" value="1.000"/>
2222 <search_score name="deltacnstar" value="0.000"/>
2223 <search_score name="spscore" value="0.0"/>
2224 <search_score name="sprank" value="3"/>
2225 <search_score name="expect" value="3.62E+001"/>
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2229 <spectrum_query spectrum="201208-378803.00024.00024.2" spectrumNativeID="sample=1 period=1 cycle=1201 experiment=2" start_scan="24" end_scan="24" precursor_neutral_mass="878.349536" assumed_charge="2" index="47" retention_time_sec="673.5">
2230 <search_result>
2231 <search_hit hit_rank="1" peptide="NESICEK" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="879.364398" massdiff="-1.014862" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="236">
2232 <modification_info modified_peptide="NESICEK">
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2235 <search_score name="xcorr" value="0.395"/>
2236 <search_score name="deltacn" value="0.121"/>
2237 <search_score name="deltacnstar" value="0.000"/>
2238 <search_score name="spscore" value="20.6"/>
2239 <search_score name="sprank" value="1"/>
2240 <search_score name="expect" value="3.17E+000"/>
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2242 <search_hit hit_rank="2" peptide="DATGSVNDT" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="878.361755" massdiff="-0.012219" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236">
2243 <search_score name="xcorr" value="0.348"/>
2244 <search_score name="deltacn" value="0.374"/>
2245 <search_score name="deltacnstar" value="0.245"/>
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2627 <search_score name="expect" value="1.79E+001"/>
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2775 <search_score name="expect" value="9.33E+000"/>
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2799 <search_score name="spscore" value="1.0"/>
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2808 <search_score name="deltacn" value="0.007"/>
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2810 <search_score name="spscore" value="14.1"/>
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2812 <search_score name="expect" value="1.46E+001"/>
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2818 <search_score name="spscore" value="9.4"/>
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2820 <search_score name="expect" value="1.51E+001"/>
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2825 <search_score name="deltacnstar" value="0.000"/>
2826 <search_score name="spscore" value="6.9"/>
2827 <search_score name="sprank" value="3"/>
2828 <search_score name="expect" value="3.05E+001"/>
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2830 <search_hit hit_rank="5" peptide="AEWEMGAVK" peptide_prev_aa="S" peptide_next_aa="A" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1035.469517" massdiff="2.992793" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="458">
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2837 <search_score name="spscore" value="5.5"/>
2838 <search_score name="sprank" value="5"/>
2839 <search_score name="expect" value="3.06E+001"/>
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2852 <search_score name="deltacn" value="0.056"/>
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2854 <search_score name="spscore" value="4.4"/>
2855 <search_score name="sprank" value="6"/>
2856 <search_score name="expect" value="2.08E+001"/>
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2865 <search_score name="deltacn" value="0.014"/>
2866 <search_score name="deltacnstar" value="0.000"/>
2867 <search_score name="spscore" value="11.2"/>
2868 <search_score name="sprank" value="1"/>
2869 <search_score name="expect" value="2.61E+001"/>
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2878 <search_score name="spscore" value="0.5"/>
2879 <search_score name="sprank" value="26"/>
2880 <search_score name="expect" value="2.75E+001"/>
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2882 <search_hit hit_rank="4" peptide="LGVQGQPPSTQGPYQ" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1558.715119" massdiff="-1.021655" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="522">
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2889 <search_score name="deltacn" value="0.037"/>
2890 <search_score name="deltacnstar" value="0.000"/>
2891 <search_score name="spscore" value="1.4"/>
2892 <search_score name="sprank" value="18"/>
2893 <search_score name="expect" value="3.18E+001"/>
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2901 <search_score name="deltacn" value="1.000"/>
2902 <search_score name="deltacnstar" value="0.000"/>
2903 <search_score name="spscore" value="1.6"/>
2904 <search_score name="sprank" value="15"/>
2905 <search_score name="expect" value="3.63E+001"/>
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2909 <spectrum_query spectrum="201208-378803.00031.00031.3" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=2" start_scan="31" end_scan="31" precursor_neutral_mass="1866.732833" assumed_charge="3" index="61" retention_time_sec="689.9">
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2911 <search_hit hit_rank="1" peptide="NNGHSFNVEYDDSQDK" peptide_prev_aa="V" peptide_next_aa="A" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1867.760899" massdiff="-1.028065" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="102">
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2913 <search_score name="deltacn" value="0.226"/>
2914 <search_score name="deltacnstar" value="0.000"/>
2915 <search_score name="spscore" value="0.4"/>
2916 <search_score name="sprank" value="19"/>
2917 <search_score name="expect" value="5.70E+000"/>
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2919 <search_hit hit_rank="2" peptide="QNCDQFEKLGEYGFQ" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1864.746162" massdiff="1.986672" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="102">
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2925 <search_score name="xcorr" value="0.368"/>
2926 <search_score name="deltacn" value="0.121"/>
2927 <search_score name="deltacnstar" value="0.008"/>
2928 <search_score name="spscore" value="1.8"/>
2929 <search_score name="sprank" value="8"/>
2930 <search_score name="expect" value="1.78E+001"/>
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2932 <search_hit hit_rank="3" peptide="QNCDQFEKLGEYGFQ" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1865.730178" massdiff="1.002656" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="102">
2933 <modification_info modified_peptide="Q[129]N[115]CDQFEKLGEYGFQ[129]">
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2939 <search_score name="xcorr" value="0.365"/>
2940 <search_score name="deltacn" value="0.114"/>
2941 <search_score name="deltacnstar" value="0.079"/>
2942 <search_score name="spscore" value="7.1"/>
2943 <search_score name="sprank" value="1"/>
2944 <search_score name="expect" value="1.84E+001"/>
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2946 <search_hit hit_rank="4" peptide="QNCDQFEKLGEYGFQ" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1865.730178" massdiff="1.002656" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="102">
2947 <modification_info modified_peptide="Q[129]N[115]CDQ[129]FEKLGEYGFQ">
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2953 <search_score name="xcorr" value="0.336"/>
2954 <search_score name="deltacn" value="0.038"/>
2955 <search_score name="deltacnstar" value="0.000"/>
2956 <search_score name="spscore" value="1.8"/>
2957 <search_score name="sprank" value="8"/>
2958 <search_score name="expect" value="2.50E+001"/>
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2961 <modification_info modified_peptide="TISDVFGQ[129]YHFNCM[147]E">
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2967 <search_score name="deltacn" value="1.000"/>
2968 <search_score name="deltacnstar" value="0.000"/>
2969 <search_score name="spscore" value="2.3"/>
2970 <search_score name="sprank" value="6"/>
2971 <search_score name="expect" value="2.86E+001"/>
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2978 <modification_info modified_peptide="PDDLGRGGN[115]EES">
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2981 <search_score name="xcorr" value="0.475"/>
2982 <search_score name="deltacn" value="0.114"/>
2983 <search_score name="deltacnstar" value="0.000"/>
2984 <search_score name="spscore" value="14.2"/>
2985 <search_score name="sprank" value="1"/>
2986 <search_score name="expect" value="2.73E+000"/>
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2988 <search_hit hit_rank="2" peptide="LNIDSMDCQK" peptide_prev_aa="I" peptide_next_aa="Y" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1241.479157" massdiff="3.009399" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="82">
2989 <modification_info modified_peptide="LN[115]IDSM[147]DCQ[129]K">
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2992 <mod_aminoacid_mass position="8" mass="161.014665"/>
2993 <mod_aminoacid_mass position="9" mass="129.042594"/>
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2995 <search_score name="xcorr" value="0.421"/>
2996 <search_score name="deltacn" value="0.114"/>
2997 <search_score name="deltacnstar" value="0.000"/>
2998 <search_score name="spscore" value="6.3"/>
2999 <search_score name="sprank" value="2"/>
3000 <search_score name="expect" value="5.15E+000"/>
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3002 <search_hit hit_rank="3" peptide="EMSCGKGESEK" peptide_prev_aa="A" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1241.490404" massdiff="2.998152" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="82">
3003 <modification_info modified_peptide="EMSCGKGESEK">
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3006 <search_score name="xcorr" value="0.373"/>
3007 <search_score name="deltacn" value="0.018"/>
3008 <search_score name="deltacnstar" value="0.000"/>
3009 <search_score name="spscore" value="1.9"/>
3010 <search_score name="sprank" value="6"/>
3011 <search_score name="expect" value="9.05E+000"/>
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3014 <modification_info modified_peptide="ESEGKGCSMEK">
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3017 <search_score name="xcorr" value="0.366"/>
3018 <search_score name="deltacn" value="0.079"/>
3019 <search_score name="deltacnstar" value="0.000"/>
3020 <search_score name="spscore" value="1.9"/>
3021 <search_score name="sprank" value="6"/>
3022 <search_score name="expect" value="9.78E+000"/>
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3024 <search_hit hit_rank="5" peptide="SCPTMKMDEK" peptide_prev_aa="V" peptide_next_aa="T" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1242.493032" massdiff="1.995524" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="82">
3025 <modification_info modified_peptide="SCPTMKM[147]DEK">
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3030 <search_score name="deltacn" value="1.000"/>
3031 <search_score name="deltacnstar" value="0.000"/>
3032 <search_score name="spscore" value="2.1"/>
3033 <search_score name="sprank" value="5"/>
3034 <search_score name="expect" value="1.37E+001"/>
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3044 <search_score name="xcorr" value="0.118"/>
3045 <search_score name="deltacn" value="1.000"/>
3046 <search_score name="deltacnstar" value="0.000"/>
3047 <search_score name="spscore" value="0.2"/>
3048 <search_score name="sprank" value="1"/>
3049 <search_score name="expect" value="1.43E+002"/>
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3051 <search_hit hit_rank="2" peptide="EVQNPRRSIPLGIVITIFI" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="72" calc_neutral_pep_mass="2165.257225" massdiff="0.038611" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="10">
3052 <modification_info modified_peptide="EVQN[115]PRRSIPLGIVITIFI">
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3055 <search_score name="xcorr" value="0.118"/>
3056 <search_score name="deltacn" value="1.000"/>
3057 <search_score name="deltacnstar" value="0.000"/>
3058 <search_score name="spscore" value="0.2"/>
3059 <search_score name="sprank" value="1"/>
3060 <search_score name="expect" value="1.44E+002"/>
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3063 </spectrum_query>
3064 <spectrum_query spectrum="201208-378803.00032.00032.2" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=3" start_scan="32" end_scan="32" precursor_neutral_mass="1443.530557" assumed_charge="2" index="64" retention_time_sec="692.0">
3065 <search_result>
3066 <search_hit hit_rank="1" peptide="LFEESEDGMEEQ" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="22" calc_neutral_pep_mass="1442.539522" massdiff="0.991036" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="6">
3067 <modification_info modified_peptide="LFEESEDGMEEQ[129]">
3068 <mod_aminoacid_mass position="12" mass="129.042594"/>
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3070 <search_score name="xcorr" value="0.148"/>
3071 <search_score name="deltacn" value="0.153"/>
3072 <search_score name="deltacnstar" value="0.000"/>
3073 <search_score name="spscore" value="2.3"/>
3074 <search_score name="sprank" value="1"/>
3075 <search_score name="expect" value="6.12E+001"/>
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3109 <search_score name="expect" value="1.84E+000"/>
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3120 <search_score name="expect" value="3.03E+000"/>
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3183 <search_score name="expect" value="1.54E+001"/>
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3215 <spectrum_query spectrum="201208-378803.00034.00034.2" spectrumNativeID="sample=1 period=1 cycle=1206 experiment=2" start_scan="34" end_scan="34" precursor_neutral_mass="1244.228700" assumed_charge="2" index="68" retention_time_sec="697.3">
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3219 <spectrum_query spectrum="201208-378803.00035.00035.3" spectrumNativeID="sample=1 period=1 cycle=1207 experiment=2" start_scan="35" end_scan="35" precursor_neutral_mass="1617.715550" assumed_charge="3" index="69" retention_time_sec="700.0">
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3252 <search_score name="expect" value="5.96E+000"/>
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3262 <search_score name="spscore" value="1.6"/>
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3264 <search_score name="expect" value="1.64E+001"/>
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3292 <search_score name="expect" value="1.58E+001"/>
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3300 <search_score name="deltacn" value="0.038"/>
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3315 <search_score name="expect" value="2.62E+001"/>
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3325 <search_score name="sprank" value="11"/>
3326 <search_score name="expect" value="2.70E+001"/>
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3336 <search_score name="spscore" value="2.3"/>
3337 <search_score name="sprank" value="10"/>
3338 <search_score name="expect" value="2.80E+001"/>
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3350 <search_score name="deltacnstar" value="0.065"/>
3351 <search_score name="spscore" value="13.3"/>
3352 <search_score name="sprank" value="1"/>
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3517 <search_score name="expect" value="1.42E+001"/>
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3554 <search_score name="expect" value="9.14E+000"/>
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3568 <search_score name="expect" value="9.77E+000"/>
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3596 <search_score name="expect" value="6.38E+000"/>
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3606 <search_score name="spscore" value="2.1"/>
3607 <search_score name="sprank" value="6"/>
3608 <search_score name="expect" value="1.02E+001"/>
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3616 <search_score name="deltacn" value="0.107"/>
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3618 <search_score name="spscore" value="2.0"/>
3619 <search_score name="sprank" value="9"/>
3620 <search_score name="expect" value="1.24E+001"/>
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4783 <search_score name="expect" value="1.97E+001"/>
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4826 <search_score name="deltacn" value="0.020"/>
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4828 <search_score name="spscore" value="7.3"/>
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4830 <search_score name="expect" value="5.37E+000"/>
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4840 <search_score name="deltacnstar" value="0.091"/>
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4843 <search_score name="expect" value="6.07E+000"/>
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4854 <search_score name="spscore" value="2.6"/>
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4883 <search_score name="expect" value="1.23E+001"/>
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4905 <search_score name="expect" value="1.95E+001"/>
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4913 <search_score name="expect" value="2.41E+001"/>
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4937 <search_score name="expect" value="1.02E+001"/>
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4947 <search_score name="spscore" value="3.0"/>
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4949 <search_score name="expect" value="1.91E+001"/>
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4959 <search_score name="spscore" value="2.2"/>
4960 <search_score name="sprank" value="11"/>
4961 <search_score name="expect" value="5.67E+001"/>
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4972 <search_score name="expect" value="6.61E+001"/>
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4981 <search_score name="spscore" value="1.3"/>
4982 <search_score name="sprank" value="17"/>
4983 <search_score name="expect" value="6.61E+001"/>
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5528 <search_score name="sprank" value="6"/>
5529 <search_score name="expect" value="4.58E+001"/>
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9613 <search_score name="sprank" value="4"/>
9614 <search_score name="expect" value="2.39E+000"/>
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9625 <search_score name="spscore" value="4.4"/>
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10166 <search_hit hit_rank="5" peptide="ELNERNSQIQVQ" peptide_prev_aa="R" peptide_next_aa="A" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1458.695052" massdiff="0.004731" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1316">
10167 <modification_info modified_peptide="ELN[115]ERNSQIQ[129]VQ">
10168 <mod_aminoacid_mass position="3" mass="115.026943"/>
10169 <mod_aminoacid_mass position="10" mass="129.042594"/>
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10171 <search_score name="xcorr" value="0.640"/>
10172 <search_score name="deltacn" value="1.000"/>
10173 <search_score name="deltacnstar" value="0.000"/>
10174 <search_score name="spscore" value="2.7"/>
10175 <search_score name="sprank" value="12"/>
10176 <search_score name="expect" value="2.98E+001"/>
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10178 </search_result>
10179 </spectrum_query>
10180 <spectrum_query spectrum="201208-378803.00108.00108.3" spectrumNativeID="sample=1 period=1 cycle=1627 experiment=2" start_scan="108" end_scan="108" precursor_neutral_mass="1743.773361" assumed_charge="3" index="215" retention_time_sec="1070.9">
10181 <search_result>
10182 <search_hit hit_rank="1" peptide="MGPTQGGYFPENVKAM" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1742.764379" massdiff="1.008982" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="882">
10183 <modification_info modified_peptide="MGPTQ[129]GGYFPENVKAM[147]">
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10187 <search_score name="xcorr" value="0.557"/>
10188 <search_score name="deltacn" value="0.165"/>
10189 <search_score name="deltacnstar" value="0.141"/>
10190 <search_score name="spscore" value="0.6"/>
10191 <search_score name="sprank" value="7"/>
10192 <search_score name="expect" value="4.67E+000"/>
10193 </search_hit>
10194 <search_hit hit_rank="2" peptide="MGPTQGGYFPENVKAM" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1741.780363" massdiff="1.992998" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="882">
10195 <modification_info modified_peptide="MGPTQGGYFPENVKAM[147]">
10196 <mod_aminoacid_mass position="16" mass="147.035385"/>
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10198 <search_score name="xcorr" value="0.479"/>
10199 <search_score name="deltacn" value="0.028"/>
10200 <search_score name="deltacnstar" value="0.000"/>
10201 <search_score name="spscore" value="0.6"/>
10202 <search_score name="sprank" value="7"/>
10203 <search_score name="expect" value="1.02E+001"/>
10204 </search_hit>
10205 <search_hit hit_rank="3" peptide="TTSECLTVTNSSWEK" peptide_prev_aa="V" peptide_next_aa="K" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1743.750912" massdiff="0.022449" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="882">
10206 <modification_info modified_peptide="TTSECLTVTN[115]SSWEK">
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10208 <mod_aminoacid_mass position="10" mass="115.026943"/>
10209 </modification_info>
10210 <search_score name="xcorr" value="0.465"/>
10211 <search_score name="deltacn" value="0.148"/>
10212 <search_score name="deltacnstar" value="0.000"/>
10213 <search_score name="spscore" value="2.5"/>
10214 <search_score name="sprank" value="1"/>
10215 <search_score name="expect" value="1.17E+001"/>
10216 </search_hit>
10217 <search_hit hit_rank="4" peptide="VLDSKQCFNRGCEK" peptide_prev_aa="P" peptide_next_aa="H" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1743.744388" massdiff="0.028973" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="882">
10218 <modification_info modified_peptide="VLDSKQ[129]CFN[115]RGCEK">
10219 <mod_aminoacid_mass position="6" mass="129.042594"/>
10220 <mod_aminoacid_mass position="7" mass="161.014665"/>
10221 <mod_aminoacid_mass position="9" mass="115.026943"/>
10222 <mod_aminoacid_mass position="12" mass="161.014665"/>
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10224 <search_score name="xcorr" value="0.396"/>
10225 <search_score name="deltacn" value="1.000"/>
10226 <search_score name="deltacnstar" value="0.000"/>
10227 <search_score name="spscore" value="1.3"/>
10228 <search_score name="sprank" value="5"/>
10229 <search_score name="expect" value="2.32E+001"/>
10230 </search_hit>
10231 <search_hit hit_rank="5" peptide="VLDSKQCFNRGCEK" peptide_prev_aa="P" peptide_next_aa="H" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1742.760372" massdiff="1.012989" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="882">
10232 <modification_info modified_peptide="VLDSKQ[129]CFNRGCEK">
10233 <mod_aminoacid_mass position="6" mass="129.042594"/>
10234 <mod_aminoacid_mass position="7" mass="161.014665"/>
10235 <mod_aminoacid_mass position="12" mass="161.014665"/>
10236 </modification_info>
10237 <search_score name="xcorr" value="0.396"/>
10238 <search_score name="deltacn" value="1.000"/>
10239 <search_score name="deltacnstar" value="0.000"/>
10240 <search_score name="spscore" value="1.3"/>
10241 <search_score name="sprank" value="5"/>
10242 <search_score name="expect" value="2.32E+001"/>
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10244 </search_result>
10245 </spectrum_query>
10246 <spectrum_query spectrum="201208-378803.00108.00108.2" spectrumNativeID="sample=1 period=1 cycle=1627 experiment=2" start_scan="108" end_scan="108" precursor_neutral_mass="1162.515574" assumed_charge="2" index="216" retention_time_sec="1070.9">
10247 <search_result>
10248 <search_hit hit_rank="1" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1163.512853" massdiff="-0.997279" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562">
10249 <modification_info modified_peptide="ISDMN[115]QNIGAT">
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10251 </modification_info>
10252 <search_score name="xcorr" value="0.721"/>
10253 <search_score name="deltacn" value="0.290"/>
10254 <search_score name="deltacnstar" value="0.063"/>
10255 <search_score name="spscore" value="28.2"/>
10256 <search_score name="sprank" value="1"/>
10257 <search_score name="expect" value="1.00E+000"/>
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10259 <search_hit hit_rank="2" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1163.512853" massdiff="-0.997279" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562">
10260 <modification_info modified_peptide="ISDMNQ[129]NIGAT">
10261 <mod_aminoacid_mass position="6" mass="129.042594"/>
10262 </modification_info>
10263 <search_score name="xcorr" value="0.675"/>
10264 <search_score name="deltacn" value="0.242"/>
10265 <search_score name="deltacnstar" value="0.000"/>
10266 <search_score name="spscore" value="28.2"/>
10267 <search_score name="sprank" value="1"/>
10268 <search_score name="expect" value="1.00E+000"/>
10269 </search_hit>
10270 <search_hit hit_rank="3" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1163.512853" massdiff="-0.997279" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562">
10271 <modification_info modified_peptide="ISDMNQN[115]IGAT">
10272 <mod_aminoacid_mass position="7" mass="115.026943"/>
10273 </modification_info>
10274 <search_score name="xcorr" value="0.675"/>
10275 <search_score name="deltacn" value="0.242"/>
10276 <search_score name="deltacnstar" value="0.000"/>
10277 <search_score name="spscore" value="28.2"/>
10278 <search_score name="sprank" value="1"/>
10279 <search_score name="expect" value="1.00E+000"/>
10280 </search_hit>
10281 <search_hit hit_rank="4" peptide="VIDEGLMDEK" peptide_prev_aa="E" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1163.537991" massdiff="-1.022417" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562">
10282 <modification_info modified_peptide="VIDEGLM[147]DEK">
10283 <mod_aminoacid_mass position="7" mass="147.035385"/>
10284 </modification_info>
10285 <search_score name="xcorr" value="0.512"/>
10286 <search_score name="deltacn" value="0.077"/>
10287 <search_score name="deltacnstar" value="0.000"/>
10288 <search_score name="spscore" value="3.7"/>
10289 <search_score name="sprank" value="3"/>
10290 <search_score name="expect" value="2.60E+000"/>
10291 </search_hit>
10292 <search_hit hit_rank="5" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="20" calc_neutral_pep_mass="1162.528837" massdiff="-0.013263" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562">
10293 <search_score name="xcorr" value="0.473"/>
10294 <search_score name="deltacn" value="1.000"/>
10295 <search_score name="deltacnstar" value="0.000"/>
10296 <search_score name="spscore" value="15.4"/>
10297 <search_score name="sprank" value="2"/>
10298 <search_score name="expect" value="4.02E+000"/>
10299 </search_hit>
10300 </search_result>
10301 </spectrum_query>
10302 </msms_run_summary>
10303 </msms_pipeline_analysis>