Mercurial > repos > galaxyp > myrimatch

comparison myrimatch.xml @ 6:ea7872c231de draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit e28e65d5554b851fa7880f0bfe32870524852276"
author galaxyp
date Fri, 12 Jun 2020 10:56:23 -0400
parents e26ef51ef341
children
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5:e26ef51ef341 6:ea7872c231de
206 <param name="MaxDynamicMods" value="2" /> 206 <param name="MaxDynamicMods" value="2" />
207 <param name="NumChargeStates" value="5" /> 207 <param name="NumChargeStates" value="5" />
208 <param name="MaxResultRank" value="3" /> 208 <param name="MaxResultRank" value="3" />
209 <param name="MonoisotopeAdjustmentSet" value="[-1,2]" /> 209 <param name="MonoisotopeAdjustmentSet" value="[-1,2]" />
210 <param name="UseSmartPlusThreeModel" value="false" /> 210 <param name="UseSmartPlusThreeModel" value="false" />
211 <output name="output" file="201208-378803-mm.pepXML" lines_diff="14" /> 211 <output name="output" file="201208-378803-mm.pepXML" lines_diff="9000" />
212 </test> 212 </test>
213 <test> 213 <test>
214 <param name="input" value="input/201208-378803.mzML" /> 214 <param name="input" value="input/201208-378803.mzML" />
215 <param name="ProteinDatabase" value="input/cow.protein.PRG2012-subset.fasta" /> 215 <param name="ProteinDatabase" value="input/cow.protein.PRG2012-subset.fasta" />
216 <param name="CleavageRules" value="Trypsin" /> 216 <param name="CleavageRules" value="Trypsin" />
220 <param name="MinTerminiCleavages" value="2" /> 220 <param name="MinTerminiCleavages" value="2" />
221 <param name="MaxMissedCleavages" value="4" /> 221 <param name="MaxMissedCleavages" value="4" />
222 <param name="NumChargeStates" value="3" /> 222 <param name="NumChargeStates" value="3" />
223 <param name="MaxResultRank" value="1" /> 223 <param name="MaxResultRank" value="1" />
224 <param name="MonoisotopeAdjustmentSet" value="0" /> 224 <param name="MonoisotopeAdjustmentSet" value="0" />
225 <output name="output" file="201208-378803-mm-15ppm-fully-tryptic.pepXML" lines_diff="14" /> 225 <output name="output" file="201208-378803-mm-15ppm-fully-tryptic.pepXML" lines_diff="200" />
226 </test> 226 </test>
227 </tests> 227 </tests>
228 <help> 228 <help>
229 <![CDATA[ 229 <![CDATA[
230 **What it does** 230 **What it does**