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comparison mz_to_sqlite.xml @ 2:1320693cbf1e draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
author galaxyp
date Mon, 11 Feb 2019 17:30:46 -0500
parents e34bdac5b157
children 728d459bafe8
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1:e34bdac5b157 2:1320693cbf1e
1 <tool id="mz_to_sqlite" name="mz to sqlite" version="2.0.0"> 1 <tool id="mz_to_sqlite" name="mz to sqlite" version="2.0.2">
2 <description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description> 2 <description>Extract mzIdentML and associated proteomics datasets into a SQLite DB</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.0.0">mztosqlite</requirement> 4 <requirement type="package" version="2.0.2">mztosqlite</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
7 <exit_code range="1:" level="fatal" description="Error Running mz_to_sqlite" /> 7 <exit_code range="1:" level="fatal" description="Error Running mz_to_sqlite" />
8 </stdio> 8 </stdio>
9 <command> 9 <command>
36 <outputs> 36 <outputs>
37 <data format="mz.sqlite" name="sqlite_db" label="${tool.name} on ${on_string}" from_work_dir="sqlite.db"/> 37 <data format="mz.sqlite" name="sqlite_db" label="${tool.name} on ${on_string}" from_work_dir="sqlite.db"/>
38 </outputs> 38 </outputs>
39 <tests> 39 <tests>
40 <test> 40 <test>
41 <param name="mzinput" value="test_id.mzid" ftype="mzid"></param>
42 <param name="scanfiles" value="test.mgf" ftype="mgf"></param>
43 <param name="searchdbs" value="test.fasta" ftype="fasta"></param>
44 <output name="sqlite_db" file="sqlite.db" />
41 </test> 45 </test>
42 </tests> 46 </tests>
43 <help> 47 <help>
44 <![CDATA[ 48 <![CDATA[
45 ** mz_to_sqlite converts proteomics file formats to a SQLite database** 49 ** mz_to_sqlite converts proteomics file formats to a SQLite database**
46 50
47 ]]> 51 ]]>
48 </help> 52 </help>
53 <citations></citations>
49 </tool> 54 </tool>